TCONS_00002502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002502
Unique NameTCONS_00002502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002502 ID=TCONS_00002502|Name=TCONS_00002502|organism=Clytia hemisphaerica|type=transcript|length=1458bp
ATGCCTTCAATGGGACAATTCAGTTTCTGATTTAGCGATAAATGCTAACA
GCTCAGGCTCCGCAATTATCAAGTTCAGATTTAGCTATGGAACTGAAGAC
CGTTCCAGTGTTAATATTGAATGTGGAATATGGAATACAGATCAAGCCAA
AATTATTCCCATGGTGACTAAAATGGGTAACCAACCTGCACAAAGAAGAA
GTGGAGTTACTGGCGATGTTTTAGGGAATAATGCAGCTCTCTATACAGAA
TCTACACAACCAACTGTTATTGGATTAAGATTGAGTAATATTGCAAAGAC
CTTCCCAACTCAGTACCGTTGCGATGCATCTTTTACTAAAGCTGATGGTG
TGGCTGATAGTGAAGCAAGTGATCGTGTCAATCTTATTGTCTTAGATCGT
CCAAAATTTGTAGACTGTTTGAAAAACATAGAATCCACATCAACTACAGC
TGGAAATTCACTTGATATAACATGCAAAGTCTCTGGCAACCCAACTCCTA
ACTTGAAATGTTCACTGTTGGCTTTTGATAGAGATATCCTAAATACTTTC
CCTAAAAAAAGTAATGGTCGGAATCTTGATGAAGATGAACCTGGTACTCC
ATTCAACATCTCATCGTCATTTTCAAATTTGCCAAAAGAGGCCCGTATTG
TTCGATGCTTTGCTTCTCAAACACTTACTGGGACCAATTCgttagaaaga
aaaataactgtCTTGCacACACCTTTTCCACCAAAGAATTTTAGCCAAGA
AAACAGTCCTGATCGAACATCAATCACAGTCTCTTGGTTACCACTTACTA
ACGATGAATGGGGAGGTGCCAAAGATGGCTATAGGGTAGCTTACTACATG
GTTGGTCAGGATCCGCGATTGAATTTAACGACAAAGGAATTGGGACATCA
ACCTTCAGAATTTGGCCAGGATGCAAACGTTTATGTCTCTAGAAAAGTGG
GAGAAAAAGATGTGGAATTTTATTTCTATACTATCAAAGGTTTAAATCCA
CAGAGACCTTATCAAGTATATCTTTATGCACAGAACCGTTATGGAAAAGG
AGATGATTCAATAAGGTTTTCCATGACACCTGGTGATAATCcAAATGCAA
TGGAATCAAGGAATCCTGAATCTGATAGTAAATTGGCAGAGATAATTGGT
GGTGTCATTGGTGGTACTATTGTTTTGGTGTTGATTGTCATCCTGGTTGT
ATGGCTTTGTAGACGTCCATCTGCACCCAAAAAAAGCAAGTATCCCACAA
GGTAGGCTCAATAACTAACTTTCAtctatttgactttgaataagGCTACG
AAAAGTTGGAGTTCCTGTCTGCCCAACAATGTAACTTCAGTTACCCCACT
CAGGAAATCGGTAACCTTATGAGGCTAACCCTAAAAAGTGTTTCTGTTTC
TGACCagggaaaattaatttttagtcttttttatgACGATGTTACACCAC
TAcaaagt
Run BLAST on NCBI

transcript from alignment at sc0000020:407583..412538-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002502 ID=TCONS_00002502|Name=TCONS_00002502|organism=Clytia hemisphaerica|type=transcript|length=4956bp|location=Sequence derived from alignment at sc0000020:407583..412538- (Clytia hemisphaerica)
ATGCCTTCAATGGGACAATTCAGTTTCTGATTTAGCGATAAATGCTAACA
GCTCAGGCTCCGCAATTATCAAGTTCAGATTTAGCTATGGAACTGAAGAC
CGTTCCAGTGTTAATATTGAATGTGGAATATGGAATACAGATCAAGCCAA
AATTATTCCCATGGTGACTAAAATGGGTAACCAACCTGCACAAAGAAGAA
GTGGAGTTACTGGCGATGTTTTAGGGAATAATGCAGCTCTCTATACAGAA
TCTACACAACCAACTGTTATTGGATTAAGATTGAGTAATATTGCAAAGAC
CTTCCCAACTCAGTACCGTTGCGATGCATCTTTTACTAAAGCTGATGGTG
TGGCTGATAGTGAAGCAAGTGATCGTGTCAATCTTATTGTCTTAGGTAAA
TGAAACCCTTCACTTTATTGTGTTTGAAATTTTTAATCAAACATAATTGA
TGACATTATCAGAATCAAATACACTCAATTCAACCAAGCTTTCAGCAAAT
GCGTCTCAAGGAATACTATTGATTGAAGTATTGTANCGATGACATTATCA
GAATCAAGTACACTCAATTCAACCAAGCTTTCAGCAAATGCGTCTCAAGG
AATACTATTGATTGAAGTATTGTATATAGCGTTGTCCATAGCTAGATGTT
GAGATATTTGACTTTGAAAACTCGCTCATGTATTTGGATGCTTCTGGCCC
TTCTCTGATTTTTTCTTAGGGATAAAGCTGACAAAATTTATTAGCCACCC
CGTTATGAAGATTTACTCCATCAGGTGGTAAAATAAGTCTAAGAACTTCA
AACTTTCTAACAGTCTCTAAGCTACAAACCCTTCAAAGCTCTCCATAGAA
AATTTTTGCAGGCTTGTTAGCTCAGCATTGAAGCAATTGAAGCAACATTT
TTAGATTTCATTAATCCATCTGTAATATTTTATGTTTTCAGATCGTCCAA
AATTTGTAGACTGTTTGAAAAACATAGAATCCACATCAACTACAGCTGGA
AATTCACTTGATATAACATGCAAAGTCTCTGGCAACCCAACTCCTAACTT
GAAATGTTCACTGTTGGCTTTTGATAGAGATATCCTAAATACTTTCCCTA
AAAAAAGTAATGGTCGGAATCTTGATGAAGATGGTAATGATTTACTAATA
TTATGATAACATTATTTAAAGAAGAGATATTATTTAGTTCATCACAATTC
ATGGATCATTTTTATAACTTAATGATGTGTTATAAACACATAGAAGCTTT
GAAAATTTTTTTTTTTGAATCTTTCAATTTTGTTTATAATTGATTGTTAA
TCTTGTTTATAATGTTAAATTTTTAGAACCTGGTACTCCATTCAACATCT
CATCGTCATTTTCAAATTTGCCAAAAGAGGCCCGTATTGTTCGATGCTTT
GCTTCTCAAACACTTACTGGGACCAATTCGTTAGAAAGAAAAATAACTGT
CTTGCGTAAGTTATTATTTTTATATCATACTTGAAAGCTTAAATTTCATT
TCCTGAATTTTGAAAGTTCGTGTGGCGGCTGAAATCCTTTTTTCGCCTTG
AAATTAAGAAATCAGAAAAAATACCAAGCCAATGCTCATTTTCCCAAATA
AAAAAATTTCTGACTTCTTATTTGCATTTTCTTACAATGATTGCCATTTT
TTTATTACGTTATCGTCTTATTACGTTAACCTTAAGGTAGGTCCACTCAG
CATGTAGCCTGTTGACATTAAATTGGAATCATTGAAAGACAAAAACTTTG
CTTAATTTACATCCATATGCACTATAAACCTTTTTTTCCACCGCGTGTGG
AATTTTTATTTGGACATTCTTTGCTCTAACAGTAACGAAAATATTGTCCT
AAAGAATATATTGAATTTATCCTAATAGATAGCATTTGGAGTCTGGTGCG
AAGAAAATAAAGGGAGCACAAGGTTCAAGCACCAGATTCACTGTAGATCA
CACTGTAACGTTTTATTGAATTTAATGCAATTTATATGCAAATCAGGGGT
TCTTTTTCATTTTGAATATGACATGAAATTAGAATAAGAATGTATTTTTG
TATTTATCACAAAATGCTTAATCAGTTGAAGTCAAAAAGAATTTTCGATA
CTGAAAGTTCTGGACAGCTCAACACAACTGTTGTCGCCACAGTCAGGCTC
AACTTACTCTTTTTTTAACCTAGCACAATACGAGTAGTTCAACTGTTGTT
GGCTCAACAAAGGTTAACTACCAAACCTTTGTAATGGTAAATTGATCTGC
TATCCTTTAGGGACTTTATTTTCAGTGGCTGTCAATACTACTCTAATTTG
TTTACTTCTTTCCTGATTAGATTTATCATGAAAATTCTAAGACAACCTAG
GAAAGTCTCAAACTATTCTCATTACAGTATTTTTAGTTTGCATTAAAAAG
GAAAAGCTTCACGATTTTCTCCAAGATTTACCATTTTTCGTTACTTTTAA
AAAATGATTGCGGAATCAAAAATGAGCCACAACAGGAAAGCTGATATTTT
TTCACACCTATGCGATTTCAAACGTTTTCACGTTGCCATTGCAGTGGGCG
TTGTGACTGCGGAAACTCTCTATTACATATGTGTTCGTTTTTTTCTTTTC
TTCAGACACACCTTTTCCACCAAAGAATTTTAGCCAAGAAAACAGTCCTG
ATCGAACATCAATCACAGTCTCTTGGTTACCACTTACTAACGATGAATGG
GGAGGTGCCAAAGATGGCTATAGGGTAGCTTACTACATGGTTGGTCAGGA
TCCGCGATTGAATTTAACGACAAAGGAATTGGGACATCAACCTTCAGAAT
TTGGCCAGGATGCAAACGTTTATGTCTCTAGAAAAGTGGGAGAAAAAGAT
GTGGAATTTTATTTCTATACTATCAAAGGTTTAAATCCACAGAGACCTTA
TCAAGTATATCTTTATGCACAGAACCGTTATGGAAAAGGAGATGATTCAA
TAAGGTTTTCCATGACACCTGGTGATAATCGTAAGTAAATGCTCTCATGA
TATTTTAATAACAGAGAAAAAAAATTATTTCTTCAAAACTTTTTAAAGCG
AGTCTTAGTAAGTAACTCTGCGACCACATTCAGAGGCGACCCGAAGGCTC
CTCTTTTGATACCTATCTACCCGAAGGTAGGGGAGGGCGCCACTCTTTCT
CCCTGGATTGCTCCACTTACCCTTGATCCTTCTCTTAATTGCTGAGCATC
AAGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACT
AAATATTTCCTTCCTCATTATGCCTAGGCAAATGAATTTGGTAAAAGTTT
AGAAAATGATGGGTGGGGACACCACTTTGAAAAATTGGAGGGGGCGCCAT
TTAAAAAAAATTGACTTTGGCCCCTCCAGAAAAATGTTCCCACAACGCCA
CTGATCGGTAATGAGTCTTAAGTAGCCAACTCAATTTACATACAATAAAA
CTTTTCCTTGATATTTGAAAAAATACAAATTAGAAAGTATTTACATTTTG
AATTTATTTTAGCAAATGCAATGGAATCAAGGAATCCTGAATCTGATAGT
AAATTGGCAGAGATAATTGGTGGTGTCATTGGTGGTACTATTGTTTTGGT
GTTGATTGTCATCCTGGTTGTATGGCTTTGTAGACGTCCATCTGCACCCA
AAAGTAAGGATTTGCCTGTTATAAAAAGAATTGGATAATGAATATTCATT
CAATTTTCCTGTTCCTTTTTGTTACTGTTCTAGTTCTGTTCATAGTGGTC
CTTCGTGGAAACAATTCGTGAGCTGTCTAAAAGCTGCAGAATTTTTCGGA
GCCTTTGAACATTCGTTATTGTTATTATTATCATTATCAATAATTAAAAT
TTGATTGAATTTTGCGATAGTATAAATTCATTAAAAAAATTTATTACCTA
ATTGCCTAATAACCCCTTCATCTGAAAACAAAAAACTGACTGTTCGCAAT
TTTTTCTTTCTTTGCCTAAATAGGACCCACCATAAAAATAGAATTTTTAA
TTTAACGTAACCTTTTTTCTTTGTTTACAGAAAGCAAGTATCCCACAAGG
TAGGCTCAATAACTAACTTTCATCTATTTGACTTTGAATAAGGCTACGAA
AAGTTGGAGTTCCTGTCTGCCCAACAATGTAACTTCAGTTACCCCACTCA
GGAAATCGGTAACCTTATGAGGCTAACCCTAAAAAGTGTTTCTGTTTCTG
ACCAGGGAAAATTAATTTTTAGTCTTTTTTATGACGATGTTACACCACTA
CAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001339XLOC_001339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002502-exon-sc0000020-1575043694:412144..412538TCONS_00002502-exon-sc0000020-1575043694:412144..412538Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1575043694:411406..411597TCONS_00002502-exon-sc0000020-1575043694:411406..411597Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1575043694:411084..411212TCONS_00002502-exon-sc0000020-1575043694:411084..411212Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1575043694:409559..409933TCONS_00002502-exon-sc0000020-1575043694:409559..409933Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1575043694:408186..408326TCONS_00002502-exon-sc0000020-1575043694:408186..408326Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1575043694:407583..407808TCONS_00002502-exon-sc0000020-1575043694:407583..407808Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1510915933:412144..412538TCONS_00002502-exon-sc0000020-1510915933:412144..412538Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1510915933:411406..411597TCONS_00002502-exon-sc0000020-1510915933:411406..411597Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1510915933:411084..411212TCONS_00002502-exon-sc0000020-1510915933:411084..411212Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1510915933:409559..409933TCONS_00002502-exon-sc0000020-1510915933:409559..409933Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1510915933:408186..408326TCONS_00002502-exon-sc0000020-1510915933:408186..408326Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1510915933:407583..407808TCONS_00002502-exon-sc0000020-1510915933:407583..407808Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1491911889:412144..412538TCONS_00002502-exon-sc0000020-1491911889:412144..412538Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1491911889:411406..411597TCONS_00002502-exon-sc0000020-1491911889:411406..411597Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1491911889:411084..411212TCONS_00002502-exon-sc0000020-1491911889:411084..411212Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1491911889:409559..409933TCONS_00002502-exon-sc0000020-1491911889:409559..409933Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1491911889:408186..408326TCONS_00002502-exon-sc0000020-1491911889:408186..408326Clytia hemisphaericaexon
TCONS_00002502-exon-sc0000020-1491911889:407583..407808TCONS_00002502-exon-sc0000020-1491911889:407583..407808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:407583..412538 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.10404	3.88418	57.766	63.4027	86.7494	83.9169	49.5008	54.4892	50.2471	64.6462	55.352	34.3781	61.9245	44.1587	39.8464	51.121	41.0993	53.0179	32.5469	54.3846	29.377	25.5368	12.178	16.3035	26.5755	26.5155	70.5887	55.3864	81.7957	82.71
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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