TCONS_00002430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002430
Unique NameTCONS_00002430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002430 ID=TCONS_00002430|Name=TCONS_00002430|organism=Clytia hemisphaerica|type=transcript|length=1383bp
ggggtgtatacattgaaatattattttgggCCATGTTTCCGTTGATTTTG
ACTATTGAATTAGACTGTTCAAGTGTAAAacaagctttgaaaaaatcaaa
tatctcaAGCACATGTTCGCTTACATACCCGGTGATTAACGAGAAATACC
TTTTCCATGTGTATCACTTAAAGCAATCATCTTGAATGGAATTGGTTAAT
TTTATGACATGCCTTCATAATTGTCAGATCTGGCAGTGTTTAAAGACGTG
TGAGGGAGAGAGTTTATTTACATATAAGTCGTATGGATAAACTTATAGCT
CTCTACAATCGCATAACTTTAACTTGCCAAAAAATCTTCCTTCTTTAATT
AGCAAGTACTTGAACTTTGAAGTAGCAGGAGAAAAGCAGAATACATTGAT
AAACAAGAGGAGCAGGATCACATAACAAGAAGAAAAGACAATTTCAGCCA
AGAAACCAAAGAAGAGCTAAAACAACATTATAAAGCTATGAACAACCAAG
GAAACCCAGGGTACGAGCGCCAGCACAATGAAGGCGTTAACATGACGCCA
ATTGCAAATCAACCAATACCTTTACAGCAGAATCCAGTTGGATTTCCTGT
TCAGATGCAATCATTGGACCATTATCCATCTAACCATAAATGCTTGGCTT
GCACAGGATTGATATGCACGGGATGTACGTACTGTTGTTGTCCAATAGGT
ATGGCTGCTGTCGCATCATCGAATCACGTTGATATGGCAATGACAATGAG
AAACTACGAAGCTGCTGATATCCATTCTCGACGAACAAAAACGTTGGCCA
TTGTTGCTATTGCCGTTGGAACTTTTTTACTTATTCTGTTTTTTATCCTC
GCCTTTACTGCTGGTCGAAAGCACTTTTGATAGAGTTTATTATTCTCCGA
TTCAGTTTTGTTAAAGTAATATTTCCTTTTaacactttcaaccaatcatt
TTGTGCTATGCTAAATAATTTAAGCGGGAACTAATATTGTCgcttttttc
gtgatttttcggcaaaatcgcgaaaattaaattCCACAAGCTATAAATTT
GACCATTTCCCATCAAAAATCccaaggaaaaaaaagaaatgtgtGCGAAA
AAGGGAGAAACTGCAAAAATCGATTTCCacgaaatgtgattttttcaact
ttttcgactgcgaaaattagttcctgctAAAATTAGTTCACTTATATgtc
cttaagggctctgaccatagtcaaaaattAGTATTTCAGTTTAATGTCGA
TATTTTGGCTGAAGGTTCCTTTTAGgaactagcaaaaaactgcGTTTACA
GAATTGTGAAATATTAATTCCTTCGCCAGATATTTAGTATCAAACTTTGT
GTATCTAAAACCTcatcttttaaaatcaaaact
Run BLAST on NCBI

protein sequence of TCONS_00002430-protein

>TCONS_00002430-protein ID=TCONS_00002430-protein|Name=TCONS_00002430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MNNQGNPGYERQHNEGVNMTPIANQPIPLQQNPVGFPVQMQSLDHYPSNH
KCLACTGLICTGCTYCCCPIGMAAVASSNHVDMAMTMRNYEAADIHSRRT
KTLAIVAIAVGTFLLILFFILAFTAGRKHF
Run BLAST on NCBI

transcript from alignment at sc0000020:302134..307451+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002430 ID=TCONS_00002430|Name=TCONS_00002430|organism=Clytia hemisphaerica|type=transcript|length=5318bp|location=Sequence derived from alignment at sc0000020:302134..307451+ (Clytia hemisphaerica)
ggggtgtatacattgaaatattattttgggCCATGTTTCCGTTGATTTTG
ACTATTGAATTAGACTGTTCAAGTGTAAAacaagctttgaaaaaatcaaa
tatctcaAGCACATGTTCGCTTACATACCCGGTGATTAACGAGAAATACC
TTTTCCATGTGTATCACTTAAAGCAATCATCTTGAATGGAATTGGTTAAT
TTTATGACATGCCTTCATAATTGTCAGATCTGGCAGTGTTTAAAGACGTG
TGAGGGAGAGAGTTTATTTACATATAAGTCGTATGGATAAACTTATAGCT
CTCTACAATCGCATAACTTTAACTTGCCAAAAAATCTTCCTTCTTTAATT
AGCAAGTACTTGAACTTTGAAGTAGCAGGAGAAAAGCAGAATACATTGAT
AAACAAGAGGAGCAGGATCACATAACAAGAAGAAAAGACAATTTCAGCCA
AGAAACCAAAGAAGAGCTAAAACAACATTATAAAGCTATGAACAACCAAG
GTATCTAGACGTTTTCCAtactacacccccttctcagaGAGCCGGTGGGA
TTTAATCAgctagtgggggtaaaaataacggaccaaaaatCGATGGAGAT
CTTGATATTCCAATAGTTtggttaccttaagggaacttattttggcggga
actaattttggcgagcagcgaaaatcttacaaaattttaattttggcggg
aactaattttggcaaatgacagcgtaaatctgttctatcttgccttattt
tgagcaattttgatgaatttcaggggttatttaggcaaggaaacaaaaaa
ttaaattttggcgggaacttattttggcgagtgagcaaaatatttaattt
tggcgggaactaaatttggcgaatttcgtctaaattcgccaaattcgcca
aaattagttcccgccaaaataagttcccttaaggtagttttggctgggga
tttgaattccattgtcttctagccagaaaattcagtggggatgaaaaaaa
tagcacaatattttgcagtggggatttgcttatatgattattttcagcgg
agaCGAAAATCAGAGTATAAtcttccaccggggacgatattttggccaat
ttttacagtgggaagggttcccagtgggtctatgagaagggggtgtcata
CGGCCAAGAGGAATTTTTCGGCTGCCATAAATTTGATTTAGGAGCTAGCT
CAAAAATCTGGTACAGTGAAACTCTAAACAGTCTTTATCTTTATCGAACC
GTCACGAGGGGTACaagtttgttcgagttaaggaaatttcgggttatgga
gtaaggtttgcaagacattagcgaggttaagcacgggtttattttgtgta
cataacttgccaaaaCAAACCATCCNttagcgaggttaagcacgggATTA
TTTTGTGTACATAACTTGCGAAAGCAAACCATGtaagtgaaatcttatgt
acaggcctacggtatcgcattgaacggtctaaataaacacttgcttaacc
tcgctattgttaactgaagtgacgagaaaacttgttcaagtTCAGCGAGA
CATTCGCGCCGTAGAGGTTTGAGTTTAAGAGACTCTTATTAATTGAAGGA
catcaattctttcaattttcacggtataaaaatagtaaaaatattttaaa
atggcACATTACACTATTTACTAACATGTAATTACTTGGCTTTTGGCTTT
TTGCccataatttttcgaaatttccttaatttCCATTAAACTTATTATgc
gagatttaaaaaattgatgtAAATACTTGGGGTCCCCTCGTTGGGCTCTA
AATTGATNAAAATTATTATgcgagatttaaaaaattgatgtGAATGTTAA
TACTTGGGGTCCCCTCGTCGGGCTCAAAATTGACACTGTTACAAGAAACT
GTTCAAGtgatcaaaaataatttttttacgcTCTTATGAATTTACTTAAG
GctgtgtaaaatatttttgcctcgATTGTTTACAGGAAACCCAGGGTACG
AGCGCCAGCACAATGAAGGCGTTAACATGACGCCAATTGCAAATCAACCA
ATACCTTTACAGCAGGTTCGTAACTTATGGCTAAGTTTGAATCTTCAtga
tttgtgaaaaaaatcttcaatatatatatagtattttaatatttgcgcgc
gtttcatactttcacaaaacacatctttttacatctttttatctgtggtg
gtgtctagataacactgcttggcctacctacacaaccctatttccatcat
ataggaggatattttcacaaatggccgaaatcctgtgtaggtcgaaaact
gaggaacagataatgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatttgtattgtctttttgt
tttgtgggtttttgtctttattgtttccattttgagtagttgaaggtttt
atacttctagactatatatatatatatatatgtataAATTAGTTTTCTCA
ATgtagacacatatttcatatcaggacagtgtctgtctattgttatagta
tgctgatataagcaaaaaatgttttttcctctttctaatcaatcttgctc
cacatccgtgtcaaacCAGTGTGAAAAATCTtgctaaataaaattgaaga
ggagcaaacgatatcacttttatttaaatACAAAACCTTTAATGATTTGT
AACagagaaacaaaaaaaacaaaaaaNacacatgagctgcattttagtct
ccattgccatattccattttaaatctgtatatatttgaaataattctgtg
tcgtgtttgaaaaatcaagccaccaatcgttaaacgagacagatccagaa
ataaccattttcatgTANTCTTAGCAGAAAAGTAACTTTGATCTTTTGAC
TACAATTTCTTCATATTTATAGAATCCAGTTGGATTTCCTGTTCAGATGC
AATCATTGGACCATTATCCATCTAACCATAAATGCTTGGCTTGCACAGGA
TTGATATGCACGGGATGTACGTACTGTTGTTGTCCAATAGGTATGGCTGC
TGTCGCATCATCGAATCACGTAAGTGGCTACCATTATTGGCCATTATCAC
ACCCCTGNTGTGTCGAGTAcgttgtcgagtttgaaaatcatgccaCGTCC
CACTGTCACTGTACTGACCGTTGtttaacagcgacagatccagaagcaAC
ATTGtgtcttattcaaatttacacatttcagtttatttacNATGTACGTA
CTGTTGTTGTCCAATAGGTATGGCTGCTGTCGCATCATCGAATCACGTAA
GTGGCTACCATTATTGGCCAttatcacacccctgtctcacagccccggtg
aaacctTTTTCCTCTGTGGGGATAAAGATTCtttttgaaatcccaatggg
gatagaaattctattcaatgttaaacaagaagcccgttgggcgtgaaggc
ccagcaaaagtgaAATGTTTGcgcgcgattttcgcgaatttcggaatttc
taaaaattccaaaaaatgtttaacaagatttcaaatttccccCAGGAAAG
GGATGGCCAAAGGATTTAANNNNNNNNNNNNNNNNNNNNNNNNAGCCcta
aagctttatgaaaacttgagcaaaaactataagatatgacagaatgttga
aaaaggtttacaaagaaaaatcactaaaaggtttctttggtttgaaaagt
ctctaaagcaaagaaaatattcaagaaagtatgaatcaacacgAATCAAT
TTCCTcccttcgaccgccatcttgttttgttttgaaaacgtttgttgttt
aaggagcgcgaaatcagaaaatatatcttttttagccagtacccgacttt
agtaagcttttccctgtccagacggcaaaaagtgtgatactggtattaag
cgccgtttctaccaaaacggacagacagaaggaaacacggacaaaaaaat
agtgaGACTCTCattaaaggcccactcgctagcgctgggccaaaaatcCA
GTGTGGATGGTTTTGAGTGCAATatttaaattgaatttcgagtggggatg
aaatcaaagtcaatttgccagtggggctgaaattccaaggCATTTTCCCA
ACGGGGACAAATTTTTAGCCacatttcccagtggggctgggataccagcg
ggtctgtgacatagGGGTGTATTATCTCAAGAATACACAGAGAGCCTGCA
ATctcccatttttctttctagcaatgaaagtgaaatctcacttttgtccc
tgtgacaaaatcttttcataggcgtagcgagataccctgcaaaatttatg
gatgagagcggtttttacgacactgtaattattgtctttgtttcatcaaa
agatAATGGATATGTCATAAACGTGTGCACTCCCTCACAAATTTTGCAAG
GTATCTCGCTTCGTCTAtgcttttgggtatttccctcactttttgtccca
tgaaacaaaaaaagggtgggatggagcatgttgcattgcaccaacgcgaa
aaaaaattctcgtctccccaagcctttaatcattcatatatattttttca
ctttttatccAGGTTGATATGGCAATGACAATGAGAAACTACGAAGCTGC
TGATATCCATTCTCGACGAACAAAAACGTTGGCCATTGTTGCTATTGCCG
TTGGAACTTTTTTACTTATTCTGTTTTTTATCCTCGCCTTTACTGCTGGT
CGAAAGCACTTTTGATAGAGTTTATTATTCTCCGATTCAGTTTTGTTAAA
GTAATATTTCCTTTTaacactttcaaccaatcattTTGTGCTATGCTAAA
TAATTTAAGCGGGAACTAATATTGTCgcttttttcgtgatttttcggcaa
aatcgcgaaaattaaattCCACAAGCTATAAATTTGACCATTTCCCATCA
AAAATCccaaggaaaaaaaagaaatgtgtGCGAAAAAGGGAGAAACTGCA
AAAATCGATTTCCacgaaatgtgattttttcaactttttcgactgcgaaa
attagttcctgctAAAATTAGTTCACTTATATgtccttaagggctctgac
catagtcaaaaattAGTATTTCAGTTTAATGTCGATATTTTGGCTGAAGG
TTCCTTTTAGgaactagcaaaaaactgcGTTTACAGAATTGTGAAATATT
AATTCCTTCGCCAGATATTTAGTATCAAACTTTGTGTATCTAAAACCTca
tcttttaaaatcaaaact

Coding sequence (CDS) from alignment at sc0000020:302134..307451+

>TCONS_00002430 ID=TCONS_00002430|Name=TCONS_00002430|organism=Clytia hemisphaerica|type=CDS|length=1965bp|location=Sequence derived from alignment at sc0000020:302134..307451+ (Clytia hemisphaerica)
ATGAACAACCAAGGAAACCCAGGGTACGAGCGCCAGCACAATGAAGGCGT
TAACATGACGCCAATTGCAAATCAACCAATACCTTTACAGCAGAATCCAG
TTGGATTTCCTGTTCAGATGCAATCATTGGACCATTATCCATCTAACCAT
AAATGCTTGGCTTGCACAGGATTGATATGCACGGGATGTACGTACTGTTG
TTGTCCAATAGGTATGGCTGCTGTCGCATCATCGAATCACGTTGATATGG
CAATGACAATGAGAAACTACGAAGCTGCTGATATCCATTCTCGACGAACA
AAAACGTTGGCCATTGTTGCTATTGCCGTTGGAACTTTTTTACTTATTCT
GTTTTTTATCCTCGCCTTTACTGCTGGTCGAAAGCACTTTTGAATGAACA
ACCAAGGAAACCCAGGGTACGAGCGCCAGCACAATGAAGGCGTTAACATG
ACGCCAATTGCAAATCAACCAATACCTTTACAGCAGAATCCAGTTGGATT
TCCTGTTCAGATGCAATCATTGGACCATTATCCATCTAACCATAAATGCT
TGGCTTGCACAGGATTGATATGCACGGGATGTACGTACTGTTGTTGTCCA
ATAGGTATGGCTGCTGTCGCATCATCGAATCACGTTGATATGGCAATGAC
AATGAGAAACTACGAAGCTGCTGATATCCATTCTCGACGAACAAAAACGT
TGGCCATTGTTGCTATTGCCGTTGGAACTTTTTTACTTATTCTGTTTTTT
ATCCTCGCCTTTACTGCTGGTCGAAAGCACTTTTGAATGAACAACCAAGG
AAACCCAGGGTACGAGCGCCAGCACAATGAAGGCGTTAACATGACGCCAA
TTGCAAATCAACCAATACCTTTACAGCAGAATCCAGTTGGATTTCCTGTT
CAGATGCAATCATTGGACCATTATCCATCTAACCATAAATGCTTGGCTTG
CACAGGATTGATATGCACGGGATGTACGTACTGTTGTTGTCCAATAGGTA
TGGCTGCTGTCGCATCATCGAATCACGTTGATATGGCAATGACAATGAGA
AACTACGAAGCTGCTGATATCCATTCTCGACGAACAAAAACGTTGGCCAT
TGTTGCTATTGCCGTTGGAACTTTTTTACTTATTCTGTTTTTTATCCTCG
CCTTTACTGCTGGTCGAAAGCACTTTTGAATGAACAACCAAGGAAACCCA
GGGTACGAGCGCCAGCACAATGAAGGCGTTAACATGACGCCAATTGCAAA
TCAACCAATACCTTTACAGCAGAATCCAGTTGGATTTCCTGTTCAGATGC
AATCATTGGACCATTATCCATCTAACCATAAATGCTTGGCTTGCACAGGA
TTGATATGCACGGGATGTACGTACTGTTGTTGTCCAATAGGTATGGCTGC
TGTCGCATCATCGAATCACGTTGATATGGCAATGACAATGAGAAACTACG
AAGCTGCTGATATCCATTCTCGACGAACAAAAACGTTGGCCATTGTTGCT
ATTGCCGTTGGAACTTTTTTACTTATTCTGTTTTTTATCCTCGCCTTTAC
TGCTGGTCGAAAGCACTTTTGAATGAACAACCAAGGAAACCCAGGGTACG
AGCGCCAGCACAATGAAGGCGTTAACATGACGCCAATTGCAAATCAACCA
ATACCTTTACAGCAGAATCCAGTTGGATTTCCTGTTCAGATGCAATCATT
GGACCATTATCCATCTAACCATAAATGCTTGGCTTGCACAGGATTGATAT
GCACGGGATGTACGTACTGTTGTTGTCCAATAGGTATGGCTGCTGTCGCA
TCATCGAATCACGTTGATATGGCAATGACAATGAGAAACTACGAAGCTGC
TGATATCCATTCTCGACGAACAAAAACGTTGGCCATTGTTGCTATTGCCG
TTGGAACTTTTTTACTTATTCTGTTTTTTATCCTCGCCTTTACTGCTGGT
CGAAAGCACTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001307XLOC_001307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002430-exon-sc0000020-1491911889:302134..302633TCONS_00002430-exon-sc0000020-1491911889:302134..302633Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1510915933:302134..302633TCONS_00002430-exon-sc0000020-1510915933:302134..302633Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1575043694:302134..302633TCONS_00002430-exon-sc0000020-1575043694:302134..302633Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1491911889:304119..304198TCONS_00002430-exon-sc0000020-1491911889:304119..304198Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1510915933:304119..304198TCONS_00002430-exon-sc0000020-1510915933:304119..304198Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1575043694:304119..304198TCONS_00002430-exon-sc0000020-1575043694:304119..304198Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1491911889:305156..305273TCONS_00002430-exon-sc0000020-1491911889:305156..305273Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1510915933:305156..305273TCONS_00002430-exon-sc0000020-1510915933:305156..305273Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1575043694:305156..305273TCONS_00002430-exon-sc0000020-1575043694:305156..305273Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1491911889:305501..305529TCONS_00002430-exon-sc0000020-1491911889:305501..305529Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1510915933:305501..305529TCONS_00002430-exon-sc0000020-1510915933:305501..305529Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1575043694:305501..305529TCONS_00002430-exon-sc0000020-1575043694:305501..305529Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1491911889:306796..307451TCONS_00002430-exon-sc0000020-1491911889:306796..307451Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1510915933:306796..307451TCONS_00002430-exon-sc0000020-1510915933:306796..307451Clytia hemisphaericaexon
TCONS_00002430-exon-sc0000020-1575043694:306796..307451TCONS_00002430-exon-sc0000020-1575043694:306796..307451Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002430-proteinTCONS_00002430-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:302134..307451 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.509409	0.305932	0.305829	0.65471	0.360242	0.552003	0.330942	0.583874	22.9932	27.9403	16.2927	18.5787	10.1386	12.3563	4.06692	3.6779	0.131425	0.0961567	0.149533	0.100767	0.0811135	0.0579135	0.116458	0.128691	0.218019	0.0384286
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007593CD225/Dispanin_fam
Vocabulary: Biological Process
TermDefinition
GO:0009607response to biotic stimulus
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009607 response to biotic stimulus
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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