TCONS_00002553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002553
Unique NameTCONS_00002553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002553 ID=TCONS_00002553|Name=TCONS_00002553|organism=Clytia hemisphaerica|type=transcript|length=825bp
TAATTTAGTTAGTGTATAAGCTTTGCATCCTTTCCAGATTGGATGCCTGG
CCAGAATCAACTTGTGACTTACTTACCATAATGAATTTGGTGATTTGACA
GTATACTTTCGTCTAACAATTGCAACAGTTCTTCTCAAGGCCCTACTGAC
AGGGTCTACAACATTGATTGCATCTCTGATACGATAGCGCTGTACCAGCA
AGCCACGAGATTTACAGGCACCAATGACATATGATTCACCGGCATCAGGA
AGTATTGTTAGTACGTCTCTTACAACATCTTCAAGTTGTTCCTGTGTAAT
GTCAGAGTAGTGGTTTCTAGGTCCGATCTTTCCACTAGTGCCCATCCCTA
GTTCTATTCTTCTACGGGAAAGTGTTTTGGTGGAAACTCCTAATTCTTTA
GCAACAGTTTCCCAACAGTTGAAGATTTCAAACAGCCGACCAATTTCTTC
CTGTGATATATCTTTTCTTGGGCGACCTGGTAAACCAGTAGCAGGTTCAT
TTACACACAGTCTTTCATGGATAGCTATTGACTGAGCagcttcaatattt
tcattgaaaGTGGCAAGAGTGCTTTGAATATCTTCAATAATCAAAGATAA
ATAATGCACTATGTTTTTTCCTTCACCGTCACATACCTCCTGAAGCTGAG
GATGATCTAAACATCTTTGTAAAGCTACATTTAGTACATTCAAGTAGTCT
TCAAGTCTCCTTGCCCAGTATTCCATGAGATTTTCATTATAGGTGAATAG
GTTACGTTTAGCTTGTCTGATGTTTCCAGGTAGTGAATCCAAAAAGTCTT
CAAAATTTAACTCGGTAGccatttt
Run BLAST on NCBI

protein sequence of TCONS_00002553-protein

>TCONS_00002553-protein ID=TCONS_00002553-protein|Name=TCONS_00002553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
KMATELNFEDFLDSLPGNIRQAKRNLFTYNENLMEYWARRLEDYLNVLNV
ALQRCLDHPQLQEVCDGEGKNIVHYLSLIIEDIQSTLATFNENIEAAQSI
AIHERLCVNEPATGLPGRPRKDISQEEIGRLFEIFNCWETVAKELGVSTK
TLSRRRIELGMGTSGKIGPRNHYSDITQEQLEDVVRDVLTILPDAGESYV
IGACKSRGLLVQRYRIRDAINVVDPVSRALRRTVAIVRRKYTVKSPNSLW
Run BLAST on NCBI

transcript from alignment at sc0000020:243149..243973

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002553 ID=TCONS_00002553|Name=TCONS_00002553|organism=Clytia hemisphaerica|type=transcript|length=825bp|location=Sequence derived from alignment at sc0000020:243149..243973 (Clytia hemisphaerica)
aaaatggCTACCGAGTTAAATTTTGAAGACTTTTTGGATTCACTACCTGG
AAACATCAGACAAGCTAAACGTAACCTATTCACCTATAATGAAAATCTCA
TGGAATACTGGGCAAGGAGACTTGAAGACTACTTGAATGTACTAAATGTA
GCTTTACAAAGATGTTTAGATCATCCTCAGCTTCAGGAGGTATGTGACGG
TGAAGGAAAAAACATAGTGCATTATTTATCTTTGATTATTGAAGATATTC
AAAGCACTCTTGCCACtttcaatgaaaatattgaagctGCTCAGTCAATA
GCTATCCATGAAAGACTGTGTGTAAATGAACCTGCTACTGGTTTACCAGG
TCGCCCAAGAAAAGATATATCACAGGAAGAAATTGGTCGGCTGTTTGAAA
TCTTCAACTGTTGGGAAACTGTTGCTAAAGAATTAGGAGTTTCCACCAAA
ACACTTTCCCGTAGAAGAATAGAACTAGGGATGGGCACTAGTGGAAAGAT
CGGACCTAGAAACCACTACTCTGACATTACACAGGAACAACTTGAAGATG
TTGTAAGAGACGTACTAACAATACTTCCTGATGCCGGTGAATCATATGTC
ATTGGTGCCTGTAAATCTCGTGGCTTGCTGGTACAGCGCTATCGTATCAG
AGATGCAATCAATGTTGTAGACCCTGTCAGTAGGGCCTTGAGAAGAACTG
TTGCAATTGTTAGACGAAAGTATACTGTCAAATCACCAAATTCATTATGG
TAAGTAAGTCACAAGTTGATTCTGGCCAGGCATCCAATCTGGAAAGGATG
CAAAGCTTATACACTAACTAAATTA

Coding sequence (CDS) from alignment at sc0000020:243149..243973

>TCONS_00002553 ID=TCONS_00002553|Name=TCONS_00002553|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at sc0000020:243149..243973 (Clytia hemisphaerica)
aaaatggCTACCGAGTTAAATTTTGAAGACTTTTTGGATTCACTACCTGG
AAACATCAGACAAGCTAAACGTAACCTATTCACCTATAATGAAAATCTCA
TGGAATACTGGGCAAGGAGACTTGAAGACTACTTGAATGTACTAAATGTA
GCTTTACAAAGATGTTTAGATCATCCTCAGCTTCAGGAGGTATGTGACGG
TGAAGGAAAAAACATAGTGCATTATTTATCTTTGATTATTGAAGATATTC
AAAGCACTCTTGCCACtttcaatgaaaatattgaagctGCTCAGTCAATA
GCTATCCATGAAAGACTGTGTGTAAATGAACCTGCTACTGGTTTACCAGG
TCGCCCAAGAAAAGATATATCACAGGAAGAAATTGGTCGGCTGTTTGAAA
TCTTCAACTGTTGGGAAACTGTTGCTAAAGAATTAGGAGTTTCCACCAAA
ACACTTTCCCGTAGAAGAATAGAACTAGGGATGGGCACTAGTGGAAAGAT
CGGACCTAGAAACCACTACTCTGACATTACACAGGAACAACTTGAAGATG
TTGTAAGAGACGTACTAACAATACTTCCTGATGCCGGTGAATCATATGTC
ATTGGTGCCTGTAAATCTCGTGGCTTGCTGGTACAGCGCTATCGTATCAG
AGATGCAATCAATGTTGTAGACCCTGTCAGTAGGGCCTTGAGAAGAACTG
TTGCAATTGTTAGACGAAAGTATACTGTCAAATCACCAAATTCATTATGG
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001372XLOC_001372Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002553-exon-sc0000020-1491911889:243149..243973TCONS_00002553-exon-sc0000020-1491911889:243149..243973Clytia hemisphaericaexon
TCONS_00002553-exon-sc0000020-1510915933:243149..243973TCONS_00002553-exon-sc0000020-1510915933:243149..243973Clytia hemisphaericaexon
TCONS_00002553-exon-sc0000020-1575043694:243149..243973TCONS_00002553-exon-sc0000020-1575043694:243149..243973Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002553-proteinTCONS_00002553-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:243149..243973 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.168489	0.260842	0.255193	0.543679	0.981993	0.814504	0.485246	0.533864	0.420813	0.466801	0.728785	0.421342	0.676241	0.71948	0.315864	0.56206	0.310204	0.122447	0.384395	0.445479	0.488901	0.0660358	0.240145	0	0.331122	0.31589	0.168563	0.0639246	0.065129
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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