TCONS_00002289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002289
Unique NameTCONS_00002289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2063

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002289 ID=TCONS_00002289|Name=TCONS_00002289|organism=Clytia hemisphaerica|type=transcript|length=2063bp
CAAAAATTCTTTTCTAgactttaaaaacaatttgaaaattgatataaaaG
ACAATAGAGAATTTGACAAATTCAATTTAGAATACTCCAATCATGTCTGT
TAGAAAGAAGGTTTTATTGATGGGAAAATCTGGTGCAGGAAAGACCAGTA
TGAGGTCCATTATATTTGCAAATTACATTGCAAGAGATACAAGAAGACTC
GGTGCTACAATTGACGTCGAGCACTCTCATGTTCGATTTTTGGGAAATCT
TGTTCTGAATTTATGGGATTGTGGAGGTCAAGAAGCGTTCATGGAGAATT
ATTTTGCAAGCCAGCGTGATAACATCTTTAAGAATGTGGCAGTGCTTATC
TATGTCTTTGATGTGGAGAGTCGAGAGCTTGAGAAAGATATACATTACTA
TCAGTCATGTTTGGAAGCTGTCTGGGAACACTCTCGGGAAGCAAAGATCT
TTTGTTTGATTCATAAAATGGACTTGGTGCAAGAAGATCAGAGAGATATG
ATCTTTAAGAAGCGACAACAAGAATTGACGGAGCTGTCAAAACCTTTAGA
ATGTACATTATTTCCAACTTCTATTTGGGACGAAACGCTGTACAAAGCGT
GGTCAAGTATCGTGTACAAGCTGATTCCCAACGTCAATGCATTGGAGGCG
AATTTGACTCGATTTGCTGAACTGATAGATGCTGACGAAGTGTTGCTGTT
TGAACGTGCTACTTTCCTTGTTATCTCTAATTGTCAAAGGAAATCGCACA
AAGATGTGCATCGTTTTGAAAAAGTCAGTAACATTATCAAACAATTCAAG
TTGTCGTGCAGtaaACTTCACGCTCAATTTCAAAGTATGGAAGTACGAAA
CAGTTCATTTGCAGCATACATCGATGCCTTCACTTCAAACACATATGCCA
TGGTCGTCATGTCTGATACTGACATTCCTCCAGCCACTACTATGATCAAC
ATCCGAAATGCACGCAAATATTTCGAACAATTAGAAAATGAGAAACGAAT
TTAAAGATCGCCACGCTTTAGATGTAATAAAAATATACGATATTATCTGG
ATATAATCAGTCGCAAAACCATCTTATTACACTTATTTACATCAGTGGCA
GCAACCTTAGGATCTTTAATATCTTTACTCTCACGTAATGTGTAGGAAGG
AAATTTGAATTGTAAATATTTGATACAAGGGGGTGAATGAAGGGTATTTG
TGACACGCATGCGCTCTGTTGAGTAAAGTGTTTGTTATGAAATGGTTTAA
TTACGTCACagaaccaatagctcattggttggaagtgacgtaaaatcagt
caatacgtcactttcaaccaatcagctattgggtggaacggaagacattg
caatgtgcaatggtgcatatcatgaatttgaaACCAGCAAAGTGCcaatc
attgagtttaaaacccTAAAGAGccagagaggaatcttcaacctttctca
agcaagaaaatgtGAAGTCTTAAGATTTACACCGTTTTTGGAATGACAGA
TTAAATCTAGTGctcaggctttaaactcaatggagcCAAGTTTTTCATTC
TCCAAGAAACCTTCCGAACGCCATCTTTCTAACGAAAAAAGACCTGAACT
CAGTAAAATGAAGATTAATTTCAAAATGCTAGTCAATTATTAAATCGTCT
GCAAGCTGTTTTCTCTTCTGGAAGCAATTTCTTATTATAGCCCTGGGAAT
TCTACGGAATAATGTTTCTTCGGGAGTCATGAAGTTTAGTACTTTGAATA
CATATGGCATTCATTTAGATTTTCAAGTTAATTTTCTGTTAAAACGAATC
CGTTTTTTCAATCTCAATTCACTTGTTAGTTTAACTTCTAGAGcttcttt
tttgagatttaaaaaaataatccgTATGAGCTAAATTTTGAGCTACAAAT
CAAGTTTTCGAGTACCCTGCAATtatccaacgcctttttttgtaattttg
agcgaatttaattttctttaagcACTTCACatataattttgaattttcga
tAATATAAATTATATAGCccgttattttttaaagaaagaaatgttttaaa
actttaatttaCA
Run BLAST on NCBI

protein sequence of TCONS_00002289-protein

>TCONS_00002289-protein ID=TCONS_00002289-protein|Name=TCONS_00002289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MSVRKKVLLMGKSGAGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL
GNLVLNLWDCGGQEAFMENYFASQRDNIFKNVAVLIYVFDVESRELEKDI
HYYQSCLEAVWEHSREAKIFCLIHKMDLVQEDQRDMIFKKRQQELTELSK
PLECTLFPTSIWDETLYKAWSSIVYKLIPNVNALEANLTRFAELIDADEV
LLFERATFLVISNCQRKSHKDVHRFEKVSNIIKQFKLSCSKLHAQFQSME
VRNSSFAAYIDAFTSNTYAMVVMSDTDIPPATTMINIRNARKYFEQLENE
KRI
Run BLAST on NCBI

transcript from alignment at sc0000019:1065936..1073540+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002289 ID=TCONS_00002289|Name=TCONS_00002289|organism=Clytia hemisphaerica|type=transcript|length=7605bp|location=Sequence derived from alignment at sc0000019:1065936..1073540+ (Clytia hemisphaerica)
CAAAAATTCTTTTCTAgactttaaaaacaatttgaaaattgatataaaaG
ACAATAGAGAATTTGACAAATTCAATTTAGAATACTCCAATCATGTCTGT
TAGAAAGAAGGTAAGAATATAGATTTTCATCATGATAGATACTTACTTGC
TACTTTAATGGGTTCAATTTTtatggggattaaattttggaGATTggatt
aagtcccaatggaaatttgaaaaggtcctatccatgaaatttttttgaat
taattgtgaaaatgtcaaaaagacCACTTTTAACATGTATACGGctatca
aagaagcgctaataatgcatATTTCACAACCAACATGCAACGTCTGGCAT
AGTTTGGTAGTTAAATAgcaaaaaatagcacaaaattgagaaaatattaT
CACAatccccgcaaaaattaatcccattTAAGTAATTACCTTGTTATGTG
GGTTAATTTTCACTGGACTTTTTCCCAAATTgagaatctaaaatttttgg
gACGAggcaaaattttgtgaattttgtgaATAAATTAGTTCTCTTtgcta
aaaaaagaaataaatggtATTCATATTATTTTCAGGAATGAGACATTTAA
CTTACAATTTTTcaattgatttttctatttctctATTTCTCAAGGTTTTA
TTGATGGGAAAATCTGGTGCAGGAAAGACCAGTATGAGGTCCATTATATT
TGCAAATTACATTGCAAGAGATACAAGAAGACTCGGTGCTACAAGTATGT
ATTTATAATTTCTTTCCTAATACATATACCGTTTTAGTACTTagtaaata
ttgatttttgtggTGAAAGCTAATTATAAAAGTTTGCCCATTAAGAAGAA
TAAGAGGGGTGATAATTGTTTGCATTCATAATTTGAGGAATataaagtct
tcttttttacaatcatcaaaatgaaaaacatgCAACCATCACCACCAACT
TTAGAAATGCGTCATAGAAGGGACTTTTTCCGTTCAAAATGGGGAGTTTc
agcttttttactttttgcatGCAGCTCCATTTACGTTTtaacctgtttgt
gtattttaatAAACAGTTGACTGCAACTGTAAATAGTACAGGTTCATgat
attttaaaaatagggAGATGTGATATAAATGGGTggaggagggggggggg
tgacCCCTCTCTAAAAGATGCGATAAAgaagatttgatttgatttttgat
atgaTTTGGACAAGTAGCttgcaaaaaaatgtttacaatATACATGCAAG
GTATATAATGATCATGTAGTATTTTTAAACTAAATGAGTTTCATCTTTTT
ACTTTTAGTTGACGTCGAGCACTCTCATGTTCGATTTTTGGGAAATCTTG
TTCTGAATTTATGGGATTGTGGAGGGTGAGTAAAACTTTTCATCGATTAA
AATCCCATTGAAATGTCTTAAAAGTAAGATGTTATTGTAAATTGAGTATA
TCTTTCCAGAAAAAAGTATATCGAATATAtcgaaattttttcttcaacca
CATGAGAACTTTAAACTGTCAAATTGCTCATATATATGGGAATGGGCTCC
TTTCGATGGGggtaaatttgcaatgtttaggGGTAGTTTAAGTGTCCAGG
AGTACAACACGTGACCAGGGGGTGAAAATTGAAATGTTCATGGGTAGATC
ACGGAAAATGAATTATCCTCCAACCCCATGAACAGATAAGGTTGCCGATG
CTGCAGATCCACTATTGTAATCGTTGTGATTTATCATTTTAGTCAAGAAG
CGTTCATGGAGAATTATTTTGCAAGCCAGCGTGATAACATCTTTAAGAAT
GTGGCAGTGCTTATCTATGTCTTTGATGTGGAGAGTCGAGAGCTTGAGAA
AGATATACATTACTATCAGTCATGTTTGGAAGCTGTCTGGGAACACTCTC
GGGAAGCAAAGATCTTTTGTTTGATTCATAAAATGGACTTGGTGCAAGAA
GATCAGAGAGATATGGTAGACTTATTGTTATACGATCTATTCATCCCTTT
TATTCCTCATTCTTTAAgcttatttttctgaaattgtgaacaattttatg
tattttccatttatttttcGTTGAGGAGGTCGATTGCGGGCGTAGATTTC
TGGGAAGTTTACTAAAATTTATCTTGAAGAAATCACCCAGAACAAAAtgg
atttttgatattttctacaTTCTCGTTTTTTGTAGATCTTTAAGAAGCGA
CAACAAGAATTGACGGAGCTGTCAAAACCTTTAGAATGTACATTATTTCC
AACTTCTATTTGGGACGAAACGCTGTACAAAGTATGGATGATTTTCATTA
CAATGTTCCTTTTTGTTGTCTTTTGCTACCCTTAATAGTGGTTAAATAAA
catcaatttaaaaaacaagagtTATGCTTTACTTACGACATTTATAAATT
ACAGACTAGAAAACTGTTTGGTCTGGAGGCGATAAAGGTTACCCTAGGTA
TGTAACTTCACGACAATCACGGTGTTTTTAGTATAGTAAATTCTGAGTTT
TCCCTACAGAAATTTCTAGCTAACAAAGATATTATCAGTTTtacttgcca
aaataagttcccttcaGGTATTCATTCCACCTTATCATCATTTCAATTTT
gacacattttgaaattttccttgtAGGCGTGGTCAAGTATCGTGTACAAG
CTGATTCCCAACGTCAATGCATTGGAGGCGAATTTGACTCGATTTGCTGA
ACTGATAGATGCTGACGAAGTGTTGCTGTTTGAACGTGCTACTTTCCTTG
TAAGTCAAGCATTTACGgtttctaaaattattttttgttcattataGACC
TAAAATGATTGGGTTTTTACCAAAATATTgccccaaaataattttttgct
caCTATTTACACTTCAAGATATACCTTCTCTCCTGTTTATCTGCTTAGCC
TTACGGTTCACTATCTTTGGTCGGAGGAGGGCCCGTCCCTGAATTAAAAT
ATGCTCAAATTCTCTTAAGAAACGGTTATATGGAGCTAGTCTTTTCAGTA
AGTCTATGAATAAATAGATAAATTTTTGCTTTGTCAGCACTTTTAAATCC
CCTcctaataatattgaatttgttgcagtattaatcatttttctatgttt
ttaaGGATTATTAGATTTTTTGAGATCTTTCACCTATGTATTGCTTCCAG
GGTCTAGAAATCTTTTTGTCTAAGTCTTCTCCAAAGAAATATgacaattt
gaaatctctaaaaatgggttctaaggacatgttttttttttactgtacca
aaatcaggtcTAAACAATTAGAATTAgcacctagatttcaaaaatgatca
atttgatcaatttgatcccattttcctccggttttttccaaaaaaaagag
gtcGATGTGAAAATTCAATCTTTTAGCTACACCCTGATATAAGTTTCGTA
TATAAATTGGACAAGACAAAAGCCAAATATAGAGCCGACTTTATAAATCC
GAAATagactatgatttttttcatcctgaaatactccggtTTCAACAAGC
GATATCTTAAGTTCCATAAAAGCTATTAAGATCGGACAAAAAGTATCGGA
CAGAGCTACTAaactattttcttatttttgaataacgatAAGAAAGGGTT
CAGCTGTTTCTGTTAGTGCCGATTTGAGCCGAGTTGGTTGAAAATCggca
ttttggtacagtcaaaaaaaaacatgtccctAACACGCTTCTTACGAACG
TAAAAATTCTATTGATTTCTCGCTAAAAGTAATAAAACTTGTAATTTACA
TATCTCGACATCTGAAAAGGATTCTGAAATTTTGCTCAGGATCATTAAAG
GAACCTACAGGCAAAATCCAGAATATAAAAAAGGTGCAAGACTTCTATGT
TGTCAGTCTCTCATATCTTTCCTTCACCGCAACAGGTTATCTCTAATTGT
CAAAGGAAATCGCACAAAGATGTGCATCGTTTTGAAAAAGTCAGTAACAT
TATCAAACAATTCAAGTTGTCGTGCAGGTAAGAGTAGAGAATACTTTGAG
CTCTTTAAATTTATGTTTCAAAACATTGCAAAGGATAAAAGTACAAGCAA
GTCAAAAGATTTGCTACCTGTTTCTTCCTTGGCACATCATTTGTCACTAA
TACAGTTTTAAGACTGCTTTACTCATTTTTAATTTCACCGATCGATTTTC
CCGTGGGCCTCGTCGCAAGGCATAAATTGTGTCAATCGACATAAAATTTC
CAAGAAGTACCAAACTCTAATTTGGCGCATGCGAATGCTTCGGAAATATC
ATTATCCAAAATAAGAGGAAAGCGCATTTCCCGACCGAAGATACGACTTA
TTATAATCAACTTGTTATTTAcgcaacatttttttcatttcagtaaACTT
CACGCTCAATTTCAAAGTATGGAAGTACGAAACAGTTCATTTGCAGCATA
CATCGATGCCTTCACTTCAAACACATATGCCATGGTCGTCATGTCTGATA
CTGACATTCGTAAGTGAATTTTGCCtcatacacccctgtattatgagttt
atgtatgtgtgtttttcagcgacggagacggtaaggttctagtttgacta
gatcctgaccaactgaggacgacggtaaatcagcacttttaccgtcctcg
attttacAGGTCCGAACTGCGGGCTTTTCCAAATCGTTCAAACACTCTTA
AATAACTTCAAAGTTCAGTCAAGTCTACTTAAAATTAGTAAAATGTGTTA
GCCTAGAGTATTGCCCGAACaaatagactggagtcgtttttaatccgtgt
aatacagtaatattgtTATTATATAAGTTTATATACCTTAAGTGTATTGA
TTTCGACAGGGATTTATTTGTTTGGCGGATTAACCGATTTTATTTTGGTA
AATTGACCATCCGCCAAATCTAATACCcgtcaaatttaacaaaaatattt
ttttaagatatgaattctaccgggtgcaccaaaaaaaagtatacaacttt
gtcgagatattgtgagcttcaggatttaaattttttgttcattctttttt
tattatatagagGATGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNactttt
tcaaatttaatgtatgatagctcaaaattcaagttagagcatcctctata
caataaaaaaagaatgaacaaaaaaattaaatcctgaagctcagaaaatc
tcgacaaagttgtatacttttttttggtgcacccggtatatgaaatcagc
atttttatgtgaaggtaattttttatttacctGTGCCTCACATAAATTTA
CGTAAAACACGTGTAGATGTTCCAAACATAAGTTTGTATTCAACcttaca
tttctttttttcgttACAGCTCCAGCCACTACTATGATCAACATCCGAAA
TGCACGCAAATATTTCGAACAATTAGAAAATGAGAAACGAATTTAAAGAT
CGCCACGCTTTAGATGTAATAAAAATATACGATATTATCTGGATATAATC
AGTCGCAAAACCATCTTATTACACTTATTTACATCAGTGGCAGCAACCTT
AGGATCTTTAATATCTTTACTCTCACGTAATGTGTAGGAAGGAAATTTGA
ATTGTAAATATTTGATACAAGGGGGTGAATGAAGGGTATTTGTGACACGC
ATGCGCTCTGTTGAGTAAAGTGTTTGTTATGAAATGGTTTAATTACGTCA
Cagaaccaatagctcattggttggaagtgacgtaaaatcagtcaatacgt
cactttcaaccaatcagctattgggtggaacggaagacattgcaatgtgc
aatggtgcatatcatgaatttgaaACCAGCAAAGTGCcaatcattgagtt
taaaacccTAAAGAGccagagaggaatcttcaacctttctcaagcaagaa
aatgtGAAGTCTTAAGATTTACACCGTTTTTGGAATGACAGATTAAATCT
AGTGctcaggctttaaactcaatggagcCAAGTTTTTCATTCTCCAAGAA
ACCTTCCGAACGCCATCTTTCTAACGAAAAAAGACCTGAACTCAGTAAAA
TGAAGATTAATTTCAAAATGCTAGTCAATTATTAAATCGTCTGCAAGCTG
TTTTCTCTTCTGGAAGCAATTTCTTATTATAGCCCTGGGAATTCTACGGA
ATAATGTTTCTTCGGGAGTCATGAAGTTTAGTACTTTGAATACATATGGC
ATTCATTTAGATTTTCAAGTTAATTTTCTGTTAAAACGAATCCGTTTTTT
CAATCTCAATTCACTTGTTAGTTTAACTTCTAGAGcttcttttttgagat
ttaaaaaaataatccgTATGAGCTAAATTTTGAGCTACAAATCAAGTTTT
CGAGTACCCTGCAATtatccaacgcctttttttgtaattttgagcgaatt
taattttctttaagcACTTCACatataattttgaattttcgatAATATAA
ATTATATAGCccgttattttttaaagaaagaaatgttttaaaactttaat
ttaCA

Coding sequence (CDS) from alignment at sc0000019:1065936..1073540+

>TCONS_00002289 ID=TCONS_00002289|Name=TCONS_00002289|organism=Clytia hemisphaerica|type=CDS|length=8208bp|location=Sequence derived from alignment at sc0000019:1065936..1073540+ (Clytia hemisphaerica)
ATGTCTGTTAGAAAGAAGGTTTTATTGATGGGAAAATCTGGTGCAGGAAA
GACCAGTATGAGGTCCATTATATTTGCAAATTACATTGCAAGAGATACAA
GAAGACTCGGTGCTACAATTGACGTCGAGCACTCTCATGTTCGATTTTTG
GGAAATCTTGTTCTGAATTTATGGGATTGTGGAGGTCAAGAAGCGTTCAT
GGAGAATTATTTTGCAAGCCAGCGTGATAACATCTTTAAGAATGTGGCAG
TGCTTATCTATGTCTTTGATGTGGAGAGTCGAGAGCTTGAGAAAGATATA
CATTACTATCAGTCATGTTTGGAAGCTGTCTGGGAACACTCTCGGGAAGC
AAAGATCTTTTGTTTGATTCATAAAATGGACTTGGTGCAAGAAGATCAGA
GAGATATGATCTTTAAGAAGCGACAACAAGAATTGACGGAGCTGTCAAAA
CCTTTAGAATGTACATTATTTCCAACTTCTATTTGGGACGAAACGCTGTA
CAAAGCGTGGTCAAGTATCGTGTACAAGCTGATTCCCAACGTCAATGCAT
TGGAGGCGAATTTGACTCGATTTGCTGAACTGATAGATGCTGACGAAGTG
TTGCTGTTTGAACGTGCTACTTTCCTTGTTATCTCTAATTGTCAAAGGAA
ATCGCACAAAGATGTGCATCGTTTTGAAAAAGTCAGTAACATTATCAAAC
AATTCAAGTTGTCGTGCAGtaaACTTCACGCTCAATTTCAAAGTATGGAA
GTACGAAACAGTTCATTTGCAGCATACATCGATGCCTTCACTTCAAACAC
ATATGCCATGGTCGTCATGTCTGATACTGACATTCCTCCAGCCACTACTA
TGATCAACATCCGAAATGCACGCAAATATTTCGAACAATTAGAAAATGAG
AAACGAATTTAAATGTCTGTTAGAAAGAAGGTTTTATTGATGGGAAAATC
TGGTGCAGGAAAGACCAGTATGAGGTCCATTATATTTGCAAATTACATTG
CAAGAGATACAAGAAGACTCGGTGCTACAATTGACGTCGAGCACTCTCAT
GTTCGATTTTTGGGAAATCTTGTTCTGAATTTATGGGATTGTGGAGGTCA
AGAAGCGTTCATGGAGAATTATTTTGCAAGCCAGCGTGATAACATCTTTA
AGAATGTGGCAGTGCTTATCTATGTCTTTGATGTGGAGAGTCGAGAGCTT
GAGAAAGATATACATTACTATCAGTCATGTTTGGAAGCTGTCTGGGAACA
CTCTCGGGAAGCAAAGATCTTTTGTTTGATTCATAAAATGGACTTGGTGC
AAGAAGATCAGAGAGATATGATCTTTAAGAAGCGACAACAAGAATTGACG
GAGCTGTCAAAACCTTTAGAATGTACATTATTTCCAACTTCTATTTGGGA
CGAAACGCTGTACAAAGCGTGGTCAAGTATCGTGTACAAGCTGATTCCCA
ACGTCAATGCATTGGAGGCGAATTTGACTCGATTTGCTGAACTGATAGAT
GCTGACGAAGTGTTGCTGTTTGAACGTGCTACTTTCCTTGTTATCTCTAA
TTGTCAAAGGAAATCGCACAAAGATGTGCATCGTTTTGAAAAAGTCAGTA
ACATTATCAAACAATTCAAGTTGTCGTGCAGtaaACTTCACGCTCAATTT
CAAAGTATGGAAGTACGAAACAGTTCATTTGCAGCATACATCGATGCCTT
CACTTCAAACACATATGCCATGGTCGTCATGTCTGATACTGACATTCCTC
CAGCCACTACTATGATCAACATCCGAAATGCACGCAAATATTTCGAACAA
TTAGAAAATGAGAAACGAATTTAAATGTCTGTTAGAAAGAAGGTTTTATT
GATGGGAAAATCTGGTGCAGGAAAGACCAGTATGAGGTCCATTATATTTG
CAAATTACATTGCAAGAGATACAAGAAGACTCGGTGCTACAATTGACGTC
GAGCACTCTCATGTTCGATTTTTGGGAAATCTTGTTCTGAATTTATGGGA
TTGTGGAGGTCAAGAAGCGTTCATGGAGAATTATTTTGCAAGCCAGCGTG
ATAACATCTTTAAGAATGTGGCAGTGCTTATCTATGTCTTTGATGTGGAG
AGTCGAGAGCTTGAGAAAGATATACATTACTATCAGTCATGTTTGGAAGC
TGTCTGGGAACACTCTCGGGAAGCAAAGATCTTTTGTTTGATTCATAAAA
TGGACTTGGTGCAAGAAGATCAGAGAGATATGATCTTTAAGAAGCGACAA
CAAGAATTGACGGAGCTGTCAAAACCTTTAGAATGTACATTATTTCCAAC
TTCTATTTGGGACGAAACGCTGTACAAAGCGTGGTCAAGTATCGTGTACA
AGCTGATTCCCAACGTCAATGCATTGGAGGCGAATTTGACTCGATTTGCT
GAACTGATAGATGCTGACGAAGTGTTGCTGTTTGAACGTGCTACTTTCCT
TGTTATCTCTAATTGTCAAAGGAAATCGCACAAAGATGTGCATCGTTTTG
AAAAAGTCAGTAACATTATCAAACAATTCAAGTTGTCGTGCAGtaaACTT
CACGCTCAATTTCAAAGTATGGAAGTACGAAACAGTTCATTTGCAGCATA
CATCGATGCCTTCACTTCAAACACATATGCCATGGTCGTCATGTCTGATA
CTGACATTCCTCCAGCCACTACTATGATCAACATCCGAAATGCACGCAAA
TATTTCGAACAATTAGAAAATGAGAAACGAATTTAAATGTCTGTTAGAAA
GAAGGTTTTATTGATGGGAAAATCTGGTGCAGGAAAGACCAGTATGAGGT
CCATTATATTTGCAAATTACATTGCAAGAGATACAAGAAGACTCGGTGCT
ACAATTGACGTCGAGCACTCTCATGTTCGATTTTTGGGAAATCTTGTTCT
GAATTTATGGGATTGTGGAGGTCAAGAAGCGTTCATGGAGAATTATTTTG
CAAGCCAGCGTGATAACATCTTTAAGAATGTGGCAGTGCTTATCTATGTC
TTTGATGTGGAGAGTCGAGAGCTTGAGAAAGATATACATTACTATCAGTC
ATGTTTGGAAGCTGTCTGGGAACACTCTCGGGAAGCAAAGATCTTTTGTT
TGATTCATAAAATGGACTTGGTGCAAGAAGATCAGAGAGATATGATCTTT
AAGAAGCGACAACAAGAATTGACGGAGCTGTCAAAACCTTTAGAATGTAC
ATTATTTCCAACTTCTATTTGGGACGAAACGCTGTACAAAGCGTGGTCAA
GTATCGTGTACAAGCTGATTCCCAACGTCAATGCATTGGAGGCGAATTTG
ACTCGATTTGCTGAACTGATAGATGCTGACGAAGTGTTGCTGTTTGAACG
TGCTACTTTCCTTGTTATCTCTAATTGTCAAAGGAAATCGCACAAAGATG
TGCATCGTTTTGAAAAAGTCAGTAACATTATCAAACAATTCAAGTTGTCG
TGCAGtaaACTTCACGCTCAATTTCAAAGTATGGAAGTACGAAACAGTTC
ATTTGCAGCATACATCGATGCCTTCACTTCAAACACATATGCCATGGTCG
TCATGTCTGATACTGACATTCCTCCAGCCACTACTATGATCAACATCCGA
AATGCACGCAAATATTTCGAACAATTAGAAAATGAGAAACGAATTTAAAT
GTCTGTTAGAAAGAAGGTTTTATTGATGGGAAAATCTGGTGCAGGAAAGA
CCAGTATGAGGTCCATTATATTTGCAAATTACATTGCAAGAGATACAAGA
AGACTCGGTGCTACAATTGACGTCGAGCACTCTCATGTTCGATTTTTGGG
AAATCTTGTTCTGAATTTATGGGATTGTGGAGGTCAAGAAGCGTTCATGG
AGAATTATTTTGCAAGCCAGCGTGATAACATCTTTAAGAATGTGGCAGTG
CTTATCTATGTCTTTGATGTGGAGAGTCGAGAGCTTGAGAAAGATATACA
TTACTATCAGTCATGTTTGGAAGCTGTCTGGGAACACTCTCGGGAAGCAA
AGATCTTTTGTTTGATTCATAAAATGGACTTGGTGCAAGAAGATCAGAGA
GATATGATCTTTAAGAAGCGACAACAAGAATTGACGGAGCTGTCAAAACC
TTTAGAATGTACATTATTTCCAACTTCTATTTGGGACGAAACGCTGTACA
AAGCGTGGTCAAGTATCGTGTACAAGCTGATTCCCAACGTCAATGCATTG
GAGGCGAATTTGACTCGATTTGCTGAACTGATAGATGCTGACGAAGTGTT
GCTGTTTGAACGTGCTACTTTCCTTGTTATCTCTAATTGTCAAAGGAAAT
CGCACAAAGATGTGCATCGTTTTGAAAAAGTCAGTAACATTATCAAACAA
TTCAAGTTGTCGTGCAGtaaACTTCACGCTCAATTTCAAAGTATGGAAGT
ACGAAACAGTTCATTTGCAGCATACATCGATGCCTTCACTTCAAACACAT
ATGCCATGGTCGTCATGTCTGATACTGACATTCCTCCAGCCACTACTATG
ATCAACATCCGAAATGCACGCAAATATTTCGAACAATTAGAAAATGAGAA
ACGAATTTAAATGTCTGTTAGAAAGAAGGTTTTATTGATGGGAAAATCTG
GTGCAGGAAAGACCAGTATGAGGTCCATTATATTTGCAAATTACATTGCA
AGAGATACAAGAAGACTCGGTGCTACAATTGACGTCGAGCACTCTCATGT
TCGATTTTTGGGAAATCTTGTTCTGAATTTATGGGATTGTGGAGGTCAAG
AAGCGTTCATGGAGAATTATTTTGCAAGCCAGCGTGATAACATCTTTAAG
AATGTGGCAGTGCTTATCTATGTCTTTGATGTGGAGAGTCGAGAGCTTGA
GAAAGATATACATTACTATCAGTCATGTTTGGAAGCTGTCTGGGAACACT
CTCGGGAAGCAAAGATCTTTTGTTTGATTCATAAAATGGACTTGGTGCAA
GAAGATCAGAGAGATATGATCTTTAAGAAGCGACAACAAGAATTGACGGA
GCTGTCAAAACCTTTAGAATGTACATTATTTCCAACTTCTATTTGGGACG
AAACGCTGTACAAAGCGTGGTCAAGTATCGTGTACAAGCTGATTCCCAAC
GTCAATGCATTGGAGGCGAATTTGACTCGATTTGCTGAACTGATAGATGC
TGACGAAGTGTTGCTGTTTGAACGTGCTACTTTCCTTGTTATCTCTAATT
GTCAAAGGAAATCGCACAAAGATGTGCATCGTTTTGAAAAAGTCAGTAAC
ATTATCAAACAATTCAAGTTGTCGTGCAGtaaACTTCACGCTCAATTTCA
AAGTATGGAAGTACGAAACAGTTCATTTGCAGCATACATCGATGCCTTCA
CTTCAAACACATATGCCATGGTCGTCATGTCTGATACTGACATTCCTCCA
GCCACTACTATGATCAACATCCGAAATGCACGCAAATATTTCGAACAATT
AGAAAATGAGAAACGAATTTAAATGTCTGTTAGAAAGAAGGTTTTATTGA
TGGGAAAATCTGGTGCAGGAAAGACCAGTATGAGGTCCATTATATTTGCA
AATTACATTGCAAGAGATACAAGAAGACTCGGTGCTACAATTGACGTCGA
GCACTCTCATGTTCGATTTTTGGGAAATCTTGTTCTGAATTTATGGGATT
GTGGAGGTCAAGAAGCGTTCATGGAGAATTATTTTGCAAGCCAGCGTGAT
AACATCTTTAAGAATGTGGCAGTGCTTATCTATGTCTTTGATGTGGAGAG
TCGAGAGCTTGAGAAAGATATACATTACTATCAGTCATGTTTGGAAGCTG
TCTGGGAACACTCTCGGGAAGCAAAGATCTTTTGTTTGATTCATAAAATG
GACTTGGTGCAAGAAGATCAGAGAGATATGATCTTTAAGAAGCGACAACA
AGAATTGACGGAGCTGTCAAAACCTTTAGAATGTACATTATTTCCAACTT
CTATTTGGGACGAAACGCTGTACAAAGCGTGGTCAAGTATCGTGTACAAG
CTGATTCCCAACGTCAATGCATTGGAGGCGAATTTGACTCGATTTGCTGA
ACTGATAGATGCTGACGAAGTGTTGCTGTTTGAACGTGCTACTTTCCTTG
TTATCTCTAATTGTCAAAGGAAATCGCACAAAGATGTGCATCGTTTTGAA
AAAGTCAGTAACATTATCAAACAATTCAAGTTGTCGTGCAGtaaACTTCA
CGCTCAATTTCAAAGTATGGAAGTACGAAACAGTTCATTTGCAGCATACA
TCGATGCCTTCACTTCAAACACATATGCCATGGTCGTCATGTCTGATACT
GACATTCCTCCAGCCACTACTATGATCAACATCCGAAATGCACGCAAATA
TTTCGAACAATTAGAAAATGAGAAACGAATTTAAATGTCTGTTAGAAAGA
AGGTTTTATTGATGGGAAAATCTGGTGCAGGAAAGACCAGTATGAGGTCC
ATTATATTTGCAAATTACATTGCAAGAGATACAAGAAGACTCGGTGCTAC
AATTGACGTCGAGCACTCTCATGTTCGATTTTTGGGAAATCTTGTTCTGA
ATTTATGGGATTGTGGAGGTCAAGAAGCGTTCATGGAGAATTATTTTGCA
AGCCAGCGTGATAACATCTTTAAGAATGTGGCAGTGCTTATCTATGTCTT
TGATGTGGAGAGTCGAGAGCTTGAGAAAGATATACATTACTATCAGTCAT
GTTTGGAAGCTGTCTGGGAACACTCTCGGGAAGCAAAGATCTTTTGTTTG
ATTCATAAAATGGACTTGGTGCAAGAAGATCAGAGAGATATGATCTTTAA
GAAGCGACAACAAGAATTGACGGAGCTGTCAAAACCTTTAGAATGTACAT
TATTTCCAACTTCTATTTGGGACGAAACGCTGTACAAAGCGTGGTCAAGT
ATCGTGTACAAGCTGATTCCCAACGTCAATGCATTGGAGGCGAATTTGAC
TCGATTTGCTGAACTGATAGATGCTGACGAAGTGTTGCTGTTTGAACGTG
CTACTTTCCTTGTTATCTCTAATTGTCAAAGGAAATCGCACAAAGATGTG
CATCGTTTTGAAAAAGTCAGTAACATTATCAAACAATTCAAGTTGTCGTG
CAGtaaACTTCACGCTCAATTTCAAAGTATGGAAGTACGAAACAGTTCAT
TTGCAGCATACATCGATGCCTTCACTTCAAACACATATGCCATGGTCGTC
ATGTCTGATACTGACATTCCTCCAGCCACTACTATGATCAACATCCGAAA
TGCACGCAAATATTTCGAACAATTAGAAAATGAGAAACGAATTTAAATGT
CTGTTAGAAAGAAGGTTTTATTGATGGGAAAATCTGGTGCAGGAAAGACC
AGTATGAGGTCCATTATATTTGCAAATTACATTGCAAGAGATACAAGAAG
ACTCGGTGCTACAATTGACGTCGAGCACTCTCATGTTCGATTTTTGGGAA
ATCTTGTTCTGAATTTATGGGATTGTGGAGGTCAAGAAGCGTTCATGGAG
AATTATTTTGCAAGCCAGCGTGATAACATCTTTAAGAATGTGGCAGTGCT
TATCTATGTCTTTGATGTGGAGAGTCGAGAGCTTGAGAAAGATATACATT
ACTATCAGTCATGTTTGGAAGCTGTCTGGGAACACTCTCGGGAAGCAAAG
ATCTTTTGTTTGATTCATAAAATGGACTTGGTGCAAGAAGATCAGAGAGA
TATGATCTTTAAGAAGCGACAACAAGAATTGACGGAGCTGTCAAAACCTT
TAGAATGTACATTATTTCCAACTTCTATTTGGGACGAAACGCTGTACAAA
GCGTGGTCAAGTATCGTGTACAAGCTGATTCCCAACGTCAATGCATTGGA
GGCGAATTTGACTCGATTTGCTGAACTGATAGATGCTGACGAAGTGTTGC
TGTTTGAACGTGCTACTTTCCTTGTTATCTCTAATTGTCAAAGGAAATCG
CACAAAGATGTGCATCGTTTTGAAAAAGTCAGTAACATTATCAAACAATT
CAAGTTGTCGTGCAGtaaACTTCACGCTCAATTTCAAAGTATGGAAGTAC
GAAACAGTTCATTTGCAGCATACATCGATGCCTTCACTTCAAACACATAT
GCCATGGTCGTCATGTCTGATACTGACATTCCTCCAGCCACTACTATGAT
CAACATCCGAAATGCACGCAAATATTTCGAACAATTAGAAAATGAGAAAC
GAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001213XLOC_001213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002289-exon-sc0000019-1491911889:1065936..1066045TCONS_00002289-exon-sc0000019-1491911889:1065936..1066045Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1510915933:1065936..1066045TCONS_00002289-exon-sc0000019-1510915933:1065936..1066045Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1575043694:1065936..1066045TCONS_00002289-exon-sc0000019-1575043694:1065936..1066045Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1491911889:1066580..1066679TCONS_00002289-exon-sc0000019-1491911889:1066580..1066679Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1510915933:1066580..1066679TCONS_00002289-exon-sc0000019-1510915933:1066580..1066679Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1575043694:1066580..1066679TCONS_00002289-exon-sc0000019-1575043694:1066580..1066679Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1491911889:1067244..1067310TCONS_00002289-exon-sc0000019-1491911889:1067244..1067310Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1510915933:1067244..1067310TCONS_00002289-exon-sc0000019-1510915933:1067244..1067310Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1575043694:1067244..1067310TCONS_00002289-exon-sc0000019-1575043694:1067244..1067310Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1491911889:1067678..1067900TCONS_00002289-exon-sc0000019-1491911889:1067678..1067900Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1510915933:1067678..1067900TCONS_00002289-exon-sc0000019-1510915933:1067678..1067900Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1575043694:1067678..1067900TCONS_00002289-exon-sc0000019-1575043694:1067678..1067900Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1491911889:1068121..1068216TCONS_00002289-exon-sc0000019-1491911889:1068121..1068216Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1510915933:1068121..1068216TCONS_00002289-exon-sc0000019-1510915933:1068121..1068216Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1575043694:1068121..1068216TCONS_00002289-exon-sc0000019-1575043694:1068121..1068216Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1491911889:1068562..1068684TCONS_00002289-exon-sc0000019-1491911889:1068562..1068684Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1510915933:1068562..1068684TCONS_00002289-exon-sc0000019-1510915933:1068562..1068684Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1575043694:1068562..1068684TCONS_00002289-exon-sc0000019-1575043694:1068562..1068684Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1491911889:1069821..1069912TCONS_00002289-exon-sc0000019-1491911889:1069821..1069912Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1510915933:1069821..1069912TCONS_00002289-exon-sc0000019-1510915933:1069821..1069912Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1575043694:1069821..1069912TCONS_00002289-exon-sc0000019-1575043694:1069821..1069912Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1491911889:1070279..1070394TCONS_00002289-exon-sc0000019-1491911889:1070279..1070394Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1510915933:1070279..1070394TCONS_00002289-exon-sc0000019-1510915933:1070279..1070394Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1575043694:1070279..1070394TCONS_00002289-exon-sc0000019-1575043694:1070279..1070394Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1491911889:1072405..1073540TCONS_00002289-exon-sc0000019-1491911889:1072405..1073540Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1510915933:1072405..1073540TCONS_00002289-exon-sc0000019-1510915933:1072405..1073540Clytia hemisphaericaexon
TCONS_00002289-exon-sc0000019-1575043694:1072405..1073540TCONS_00002289-exon-sc0000019-1575043694:1072405..1073540Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002289-proteinTCONS_00002289-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:1065936..1073540 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
65.4114	64.4791	67.7402	67.3301	36.2689	26.17	39.0416	40.2267	66.5933	58.6563	49.5987	41.135	34.6122	30.9599	51.2745	55.0137	54.864	50.3269	26.7684	46.0525	42.6807	42.5645	42.1772	45.8056	38.5859	45.9187	44.2457	38.4351	70.6093	58.0284
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006762Gtr1_RagA
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00002289 vs. Swiss-Prot (Human)
Match: RRAGA (Ras-related GTP-binding protein A OS=Homo sapiens GN=RRAGA PE=1 SV=1)

HSP 1 Score: 510.76 bits (1314), Expect = 9.585e-177
Identity = 241/300 (80.33%), Postives = 271/300 (90.33%), Query Frame = 3 
Query:   87 PIMSVRKKVLLMGKSGAGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEAFMENYFASQRDNIFKNVAVLIYVFDVESRELEKDIHYYQSCLEAVWEHSREAKIFCLIHKMDLVQEDQRDMIFKKRQQELTELSKPLECTLFPTSIWDETLYKAWSSIVYKLIPNVNALEANLTRFAELIDADEVLLFERATFLVISNCQRKSHKDVHRFEKVSNIIKQFKLSCSKLHAQFQSMEVRNSSFAAYIDAFTSNTYAMVVMSDTDIPPATTMINIRNARKYFEQLE 986
            P  +++KKVLLMGKSG+GKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ+ FMENYF SQRDNIF+NV VLIYVFDVESRELEKD+HYYQSCLEA+ ++S +AKIFCL+HKMDLVQEDQRD+IFK+R+++L  LS+PLEC  F TSIWDETLYKAWSSIVY+LIPNV  LE NL  FA++I+ADEVLLFERATFLVIS+ Q K  +DVHRFEK+SNIIKQFKLSCSKL A FQSMEVRNS+FAA+ID FTSNTY MVVMSD  IP A T+INIRNARK+FE+LE
Sbjct:    2 PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLE 301
The following BLAST results are available for this feature:
BLAST of TCONS_00002289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRAGA9.585e-17780.33Ras-related GTP-binding protein A OS=Homo sapiens ... [more]
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