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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024409 ID=TCONS_00024409|Name=TCONS_00024409|organism=Clytia hemisphaerica|type=transcript|length=3756bpRun BLAST on NCBI protein sequence of TCONS_00024409-protein >TCONS_00024409-protein ID=TCONS_00024409-protein|Name=TCONS_00024409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp YSGPFNQEFRKSLEKNWQKELHQRQIPFTFKLNVTSLLVDTATLAEWNLQRun BLAST on NCBI transcript from alignment at sc0000491:69566..89572- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024409 ID=TCONS_00024409|Name=TCONS_00024409|organism=Clytia hemisphaerica|type=transcript|length=20007bp|location=Sequence derived from alignment at sc0000491:69566..89572- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000491:69566..89572- >TCONS_00024409 ID=TCONS_00024409|Name=TCONS_00024409|organism=Clytia hemisphaerica|type=CDS|length=30600bp|location=Sequence derived from alignment at sc0000491:69566..89572- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024409 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 1019.22 bits (2634), Expect = 0.000e+0 Identity = 492/675 (72.89%), Postives = 578/675 (85.63%), Query Frame = 2
Query: 2 YSGPFNQEFRKSLEKNWQKELHQRQIPFTFKLNVTSLLVDTATLAEWNLQGLPNDELSSQNGIIVSKAARYPLLIDPQSQGKIWIKNKEKDHGLQVTSLNHKYFRTHLEDALSLGRPLLIEDVGEELDPVLDNILEKNFIKLGSSFKVKLGDKEVDVMNGFTMYITTKLPNPSYTPEISARTSMIDFTVTMKGLEDQLLGRVILTEKSELEAERLKLIEDVSFNKRKMKELEDNLLYRLTSVEGSLVDDESLIEVLSITKRTAEEVAQKLAVAADTELKINNAREEFRNVATRGSILYFLIVEMSFVNCMYQTSLKQFLGIFDQAIERSPQSPITTKRITNIIACLTYDVFKYSCRGLYEKDKFLFTLLLALKIDIQSNLIKHREFSTFIKGGASLDLKQVPPKPCKWILDMTWLNLVELSKLPQFTDILNQIGRNEKQWKVWFDKETPEEAEIPDGYHISLDTFRKLLLIRSWAPDRTLSQARKYIEESLGRKYAEGVILDLHETWSESDTKTPLICFLSMGSDPTVSIEQLAKRMKLECRAVSMGQGQEIHARRLINQSMQTGGWVLLQNCHLGLPFMDELMNLITTSENVDNSFRLWITTEVHPLFPITLLQMSIKFTNEPPQGLKPGLKRTYTGITQDQLDITNLHQWKPMLYAVAFLHTTVQXKAIFRPL 2026
YSGPFNQEFR L +W+KE+ R+IPF LN++ +L+D T++EWNLQGLPND+LS QNGIIV+KA+RYPLLIDPQ+QGKIWIKNKE + LQ+TSLNHKYFR HLED+LSLGRPLLIEDVGEELDP LDN+LE+NFIK GS+FKVK+GDKEVDV++GF +YITTKLPNP+YTPEISARTS+IDFTVTMKGLEDQLLGRVILTEK ELE ER L+EDV+ NKR+MKELEDNLLYRLTS +GSLV+DESLI VLS TKRTAEEV QKL ++A+TE++IN+AREE+R VATRGSILYFLI EM VN MYQTSL+QFLG+FD ++ RS +SPIT+KRI NII +TY+V+KY+ RGLYE+ KFLFTLLL LKIDIQ N +KH EF T IKGGASLDLK PPKP KWILD+TWLNLVELSKL QF+D+L+QI RNEK WK+WFDKE PEE +P+ Y SLD FR+LLLIRSW PDRT++QARKYI +S+G KYAEGVILDL +TW ESD +TPLIC LSMGSDPT SI L KR+K+E R VSMGQGQE+HAR+L+ Q+M GGW LLQNCHLGL FMDELM++I +E V ++FRLW+TTE H FPITLLQMSIKF N+PPQGL+ GLKRTY+G++QD LD+++ QWKPMLYAVAFLH+TVQ + F L
Sbjct: 3530 YSGPFNQEFRDLLLNDWRKEMKARKIPFGKNLNLSEMLIDAPTISEWNLQGLPNDDLSIQNGIIVTKASRYPLLIDPQTQGKIWIKNKESRNELQITSLNHKYFRNHLEDSLSLGRPLLIEDVGEELDPALDNVLERNFIKTGSTFKVKVGDKEVDVLDGFRLYITTKLPNPAYTPEISARTSIIDFTVTMKGLEDQLLGRVILTEKQELEKERTHLMEDVTANKRRMKELEDNLLYRLTSTQGSLVEDESLIVVLSNTKRTAEEVTQKLEISAETEVQINSAREEYRPVATRGSILYFLITEMRLVNEMYQTSLRQFLGLFDLSLARSVKSPITSKRIANIIEHMTYEVYKYAARGLYEEHKFLFTLLLTLKIDIQRNRVKHEEFLTLIKGGASLDLKACPPKPSKWILDITWLNLVELSKLRQFSDVLDQISRNEKMWKIWFDKENPEEEPLPNAYDKSLDCFRRLLLIRSWCPDRTIAQARKYIVDSMGEKYAEGVILDLEKTWEESDPRTPLICLLSMGSDPTDSIIALGKRLKIETRYVSMGQGQEVHARKLLQQTMANGGWALLQNCHLGLDFMDELMDIIIETELVHDAFRLWMTTEAHKQFPITLLQMSIKFANDPPQGLRAGLKRTYSGVSQDLLDVSSGSQWKPMLYAVAFLHSTVQERRKFGAL 4204 HSP 2 Score: 733.021 bits (1891), Expect = 0.000e+0 Identity = 325/445 (73.03%), Postives = 385/445 (86.52%), Query Frame = 2
Query: 2186 FSPMLYAVAFLHTTVQERRKFGSLGWNIPYEFNQSDFSSSVQFIQNHLDDMDIKRGVSWTTVRYMIGQVQYGGRVTDDYDKRLLNTFTKVWFSESMFLPTFKFYHGYTIPKCNKCDHYLDYIESLPTVDNPEVFGLHPNADITYQSSVAKSCLATILSIQPKDSATTGGETREAVVQRLADDMLEKLPPNYLKHEVRSKLQKMGQYQPINIFLRQEIDRMQRVIASVRTTLMDLKLAIDGTIIMNETLRDSLDCIYDARIPSHWQRISWESSTLGFWFTELLERNTQFSVWINEGRPHSFWMTGFFNPQGFLTAMRQEVTRAHKGWALDSVILQNDVLKHYKDDITSAPTEGVYVYGLFLEGAGWDRRGNKLVEPPSKVLFTPMPVIHIYAANNPPSKEQSRYPCPIYKKPVRTDLTFVTEVDLRTVQSPDHWILRGVALLCDIK 3520
+ PMLYAVAFLH+TVQERRKFG+LGWNIPYEFNQ+DF+++VQFIQNHLDDMD+K+GVSWTT+RYMIG++QYGGRVTDDYDKRLLNTF KVWFSE+MF P F FY GY IPKC+ D+YL YI+SLP D+PEVFGLHPNADITYQS +AK L TIL IQPKD++ G ETREAVV RLADDMLEKLPP+Y+ EV+ +LQKMG +QP+NIFLRQEIDRMQRV++ VR+TL +LKLAIDGTIIM+E LRD+LDC++DARIP+ W++ SW SSTLGFWFTEL+ERN+QF+ W+ GRPH FWMTGFFNPQGFLTAMRQE+TRA+KGWALD+++L N+V K KDDI++ PTEGVYVYGL+LEGAGWD+R KL+E KVLF MPVI IYA NN ++ Y CPIYKKPVRTDL ++ VDLRT Q+P+HW+LRGVALLCD+K
Sbjct: 4181 WKPMLYAVAFLHSTVQERRKFGALGWNIPYEFNQADFNATVQFIQNHLDDMDVKKGVSWTTIRYMIGEIQYGGRVTDDYDKRLLNTFAKVWFSENMFGPDFSFYQGYNIPKCSTVDNYLQYIQSLPAYDSPEVFGLHPNADITYQSKLAKDVLDTILGIQPKDTSGGGDETREAVVARLADDMLEKLPPDYVPFEVKERLQKMGPFQPMNIFLRQEIDRMQRVLSLVRSTLTELKLAIDGTIIMSENLRDALDCMFDARIPAWWKKASWISSTLGFWFTELIERNSQFTSWVFNGRPHCFWMTGFFNPQGFLTAMRQEITRANKGWALDNMVLCNEVTKWMKDDISAPPTEGVYVYGLYLEGAGWDKRNMKLIESKPKVLFELMPVIRIYAENN-TLRDPRFYSCPIYKKPVRTDLNYIAAVDLRTAQTPEHWVLRGVALLCDVK 4624 The following BLAST results are available for this feature:
BLAST of TCONS_00024409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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