TCONS_00002410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002410
Unique NameTCONS_00002410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002410 ID=TCONS_00002410|Name=TCONS_00002410|organism=Clytia hemisphaerica|type=transcript|length=232bp
CNgttttctttcttttcacgaAGCAATTTCTGATGTGCTTTTTCTTTCGC
AAGTCGTTCATTGCGTAACTGTTCTTGAATTTCCAAATTGATTTTGTTTA
GAATGTTATTATAGAATTTTTGATGCTCTTTGACGTGCTGGATGTGTTCA
GCTTCACTTAGAAATGTCAATGGATATTGGAACCCCATATTCTGGTAAAA
GGTTTTCACttagtttcaatttttaattctaa
Run BLAST on NCBI

transcript from alignment at sc0000019:987614..987845

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002410 ID=TCONS_00002410|Name=TCONS_00002410|organism=Clytia hemisphaerica|type=transcript|length=232bp|location=Sequence derived from alignment at sc0000019:987614..987845 (Clytia hemisphaerica)
ttagaattaaaaattgaaactaaGTGAAAACCTTTTACCAGAATATGGGG
TTCCAATATCCATTGACATTTCTAAGTGAAGCTGAACACATCCAGCACGT
CAAAGAGCATCAAAAATTCTATAATAACATTCTAAACAAAATCAATTTGG
AAATTCAAGAACAGTTACGCAATGAACGACTTGCGAAAGAAAAAGCACAT
CAGAAATTGCTtcgtgaaaagaaagaaaacNG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001297XLOC_001297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002410-exon-sc0000019-1491911889:987614..987845TCONS_00002410-exon-sc0000019-1491911889:987614..987845Clytia hemisphaericaexon
TCONS_00002410-exon-sc0000019-1510915933:987614..987845TCONS_00002410-exon-sc0000019-1510915933:987614..987845Clytia hemisphaericaexon
TCONS_00002410-exon-sc0000019-1575043694:987614..987845TCONS_00002410-exon-sc0000019-1575043694:987614..987845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:987614..987845 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.18366	2.99263	2.31649	0	2.75903	3.27033	10.5214	12.3125	5.17216	4.27104	9.32754	3.40642	3.40168	1.41307	4.64695	5.61025	6.91137	5.50973	4.34971	1.13791	0.989053	4.34183	4.69161	4.26536	1.0983	7.84168	0	0	5.67702	2.31359
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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