TCONS_00000073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000073
Unique NameTCONS_00000073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000073 ID=TCONS_00000073|Name=TCONS_00000073|organism=Clytia hemisphaerica|type=transcript|length=1392bp
CTAAGTCCAGGCCAGGGTTTTATTAGACATCAGTAAAAAAGCCTTATCGT
TTTCTGTTATTTTTCATTCAGACTTTCTATTATACATTGTATAGTCGGTT
AGTTCACTTCACTGTATGTAtaacattttttgtaatttcataAAGTTAGA
GAATaataggaaaaatagaaaaaataataataaataacaaaaagtaCTGC
TAATCATAATAAATGCAAGCTTGGGCAGAATGTTTGACTGGTGGATTAGC
AGCTTGCTGTGCTTGTGTTTTCAGCAATCCTTTAGAAGTTGTCAAAACTC
GAATGCAACTCCAAGGTGAACTACAGgctTCCGGAACATACAAAGTACAC
TACcgaaatttttttcatgcatTTTACACTATTGGAAAGAACGATGGAAT
ACTTGCATTGCAAAAGGGACTGGGTCTTGGGATGACTTATCAATTCATTA
TGAATGGTATAAGACTTGGAACTTTTCAACAGATTACAAATGCTGGCTTG
ACGAAAGATGACGAAGGAAATCTCAGTTTACCCAAATGTTTAATTGGTGG
TGCAGTCTCTGGTTGCCTTGGAGCTTTTGTTGCAAGTCCTTCATATATGC
TCAAAACGCAACTTCAAGCCAAAGCAAACACAGCGATTGCAGTTGGTACA
CAACACGATATTCAGAGCGTCTCATCAACACTAAAAACCATCTTCCAAAA
CCACGGTATCACTGGTTTATGGCGCGGTGCTTCCGGTGCAATGTTACGCG
TGACGTTTGGGTCAGCCTCCCAGCTAACAGCCTTCTCTAAATGCAAAGAG
AAGATCATAAAGAGTAAAGTTTTCGAAGAAGGAAGCCTCATGATCCCCGT
CGCGTCGAGTATGTCGGCAAGTGTCGTGGTTGTCATGGTAATGACGCCTT
TTGATGTCGTTTCTACACGGTTATATAATCAGCCGGTATGTAAGGAGACT
GGAAAAGGTTTAATGTACAACAATGTCTTTGATGTCTTTCGTAAGATCTT
CAAGACGGAAGGTTTTGTTGGATTCTACAAGGGTCTGGGTCCGCATTACT
TTCGTGTGGGACCGCATACAATTTTAAGTCTTGTCATTTGGGATAAATTT
CGACAAATGCTAATGAAGGAACCTTGATGCACGTTTTATGTTTGTACGTC
ATTTTCTAGGACAGAAAACCACTTGTATAGGTATAGGCTAGATAGTCGAG
TAGCATGACTTCTTAAATTTATATTCTTTCGGCTTATTTTGAATGCTCTA
TTTTTTTAACGAGTATTTAGTTATTGTACATAAAATAGGACCAATTTTAG
atcgaaaatattttctttaccCAGTGTCATTAGACCAAAGAAGTTTATAA
TGTCGCTTAAGAATAAATTGAAGTGGTGAAATCTCTaactca
Run BLAST on NCBI

transcript from alignment at sc0000001:1638692..1646962+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000073 ID=TCONS_00000073|Name=TCONS_00000073|organism=Clytia hemisphaerica|type=transcript|length=8271bp|location=Sequence derived from alignment at sc0000001:1638692..1646962+ (Clytia hemisphaerica)
CTAAGTCCAGGCCAGGGTTTTATTAGACATCAGTAAAAAAGCCTTATCGT
TTTCTGTTATTTTTCATTCAGACTTTCTATTATACATTGTATAGTCGGTT
AGTTCACTTCACTGTATGTAtaacattttttgtaatttcataAAGTTAGA
GAATaataggaaaaatagaaaaaataataataaataacaaaaagtaCTGC
TAATCATAATAAATGCAAGCTTGGGCAGAATGTTTGACTGGTGGATTAGC
AGCTTGCTGTGCTTGTGTTTTCAGCAATCCTTTAGAAGTTGTCAAAACTC
GAATGCAACTCCAAGGTGAACTACAGGTGAacatctttcattttttaagc
tACTATCTGAGTCATCATGGCATGACCCCCCCCCAGCCCGCAGGGGGGGc
tacaaccaaaatcttcctgaaaaaggctggggctggattttttttaaatt
tcagggggtacctatgaactctgggggtatctaacttttatgtagtaagg
tctgggggcttgggaactatattttatcttgcttttatctaactatcatt
attctttttaattgtaaaattatacaattttttcatttcttgacatatac
tcaagtcacagggggtacctactaacgtctgttgttagggggtacctaaa
attcagggggtacctattttcttagggggtacctaaacccctggtccatg
ccatggTCATAACTTGCTCTCAACAGTTTTCATTATTCTTCACATTCTTT
CAGTACTTATATtgctacacattttttataagcacctATGTTCTTAAGGG
ctcaaatttgccaaatttttcactctctcgtaaagtaaaagctttttaaa
taatctaaccatggcaaacgaTACCCCTTGACCCAATTAgcaaaaatttg
gtaaaatataAGGGGTGGCCAAAGcaaatctttcagaaaatgagctagaa
tgctaagcaaccccagggctgacccgaaaattggagttgcttactTACAA
AAAAGTGTGTATAGATTGACTGTCATATTCTTCTTTCCTtcctttaaaac
tttttttatcttcctttgttgttttttttcaggctTCCGGAACATACAAA
GTACACTACcgaaatttttttcatgcatTTTACACTATTGGAAAGAACGA
TGGAATACTTGCATTGCAAAAGGGACTGGGTCTTGGGATGACTTATCAAT
TCATTATGAATGGTATAAGACTTGGTAAGTTCTTCATTATCATTTTCact
ttgattgaaaatttggaaactaTGAAANNNNNNNNNNNNNNNNNNNNNNN
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ATAACTTGACAACtacttgaccaaacttaaaaagttataccgcaaaattt
aagttagcatgtcctctttctaataaaagtggttttgagtctaaacaaga
cttcagtggctcgccaaacgtccaaagttttttctgctgcacccggtata
tagtcaaagaagtattgaaccttcaactattcaaaaaatgttataaacaa
aaagagacaaaacaataccaacaagaggacacaacaacacaacatgcCCA
GGATGAATATTCATAAAATGGAAACTAGGTATGTGATATCAAATGATGAC
AAAAGATCTAAACTATTTGTACATAATTCTGATGGAACAGAAAAACAGAA
ATGGGACAATGGTGTATTCTTCGGAAGTATCTAAAAAGCAAAAATGCACA
GCATGATCTAAATCGACCAAAAGGAAAGAAGCAACTCAATGcgagaaaaa
gtaaaaataaacacaaataaaagTGACTCAGTATGAATCAATTTAATATA
TTCAAAGAAAACACAAACTCTGTTCTTCAGTTTTCANAATcaattaaata
tattcaaagaaaacacaaactctgttcttcagttttcaacctacatagga
tttcggccattttcGAAAATATCCTCCCTAATGATATAAACAGGGTATTG
TAGATAGGCCTAGCAATGTTGATCAGGCATCACCACAGATGAGGTCGTAA
AAATAAAAgtgtttctttgaattattataACGCGCGCAAAAgtataaaaa
caaactcaaaCATAAAACCTACGGACCTGCCGAGGATACCAAAAAACTAG
CTAGAGAAGTACTACCCACTGGACAAAGTTGCCACATCTTTGACCCGTTC
TGCCACTAACGTTGCAGATAATACATTCgaagataaagaaaaaaacactt
gaaGTAGACTGCCACCATCTATGACAAGGGAGAAGAAGATTGAAAGGATG
GAAAAAAGCatgagaattttttgaaaagttgggtGATAGCCCGGTTCGAT
GCCTCTTATCCCCGTGGCCGCTCAGCCCAAAAGCTGGTGAACGACTGCAT
TTAAACTGAGTTGAAACCTTGAAAATTCAGAACTGTGACGTGTAATGACT
CTACGCAGACTAAGATTGAGTTTACCAACTGTAGCGCCTTGAGCACGCAT
TCTTTGAATAAATATGTGGGATTTGTCTCTCAAGTCTTCAAATAAAAGAG
TGGATCGAGCTATTCTCAAAAACTCACCAACAAACgaagaataaaaaatg
gattCTGGCATATTACTGTCAATGTGAGGCATATGAACAAGAGAAAAAGG
AAAGGCATCGCGCTTGTCAAACAACTTGTAAACAAAAACCCCGTCTTTGA
TGGAAATGTCAAGGTTAAGGGATGAAGCATGAGATCCTGAGTGTTCAACT
TTGAGTTCAAGTTCATCTGGATAGATTTCTCTATATACTGATTCGAACAT
GTTCCCATCGTTTACAGCACAGAGATCATCAATGAATCGTTTGGTTGAAT
GAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCtcgatttcctgattttccaattcggaaaaattggattatcgag
aaaatttttccgacttggagctctcccgcatttttgcaaggcaaagttga
cagctatgcgAGCCTTCACTTTATCTTGTTCAATCAACTGGGTCATATAT
CTATGTTCGTATTGATATAAAAACAAGTTAGCCCAAAATGGCGCTGGATC
AATGCCCATTGGGATACCTATGACCTGACACATGACAACATTGCCAGCTT
TGAAACAACAATTTTTAATCAGATGTTTGACAGCGGTTttcaaagaactt
tttgaaaaggaaatAGACGATTTAGGTTTAGTTCTCGACCAGTAAGCTTT
GTCGTTCTGGGAGATGGCAATATATTTCGAACCACCTGCATCAAAAACAA
AGTCAATAATCCCTGCCAATTCTTTAATAAGTTTGTCATGAGGGATCTTT
GTGTAAAGAGTACTGAAGTCAAAGGTGGAAATAGACTTAgcattcttctt
tttattgataCGGTTTAAGGACTCCAAAACaggattgaaattttgaagca
CCCAAAACTTATTGTAATTACTCAAGAATTTTGACTTTGTGTGAAAATTT
TCTATCTGTCgataaatataatatatatttcgTTCTTTCCTGTGCGAACG
GCTGCACGGCATTtcggactttaggtgtcgaaccgggttctgggcctact
ttctttgttgttgaaaatttgtgttttttgatacttgtcttttgtcgttt
gtcttgttcttgtctttttgaacttgtttgttttgtctgttgtttaaccc
cttttttgtttctttgtatttgtgtgcgagtttttgttcatttttctatg
tttgttagtttgtttggaccgccggtcggttcagggttatggaatctggg
ggaggctgagtgttggacgtccttaaaacatgtttaaagccgctgcgcct
gtcgcaagtcggggactccagattgcatttgttgggtttttgagtggttt
ttggtgtttgtgttNNttatgtctattggtttgttggttctttttcgcat
aaaattctcatttcttgacagaatgtttgattggtttgatttatatattt
agaaaaattcaaaaaaaatgtaaaaaaacttataattaccttaagggaaa
aaACCTTGCGGTTTTTGCGGATTTAGGCCCAAACcgtaaaattaagttcc
cgcaaaatttttcaaatgcgaaaaacaaaggtcgaataattcacagtacg
gctctaattttcttccaagtgagaaatccgcaaaattaagttcccgcaaa
tattaaatattaagtcttgaactgcgaaccgcaaaaattagttcccgcaa
aaaatagttctcttaaggtataaaaatattagtccctttttatgtttttt
atctttattttatttagtattttcaacactttctctccttgaggtcagcg
ttgaaaatactaaataaaataaagatgaaacataaaaagggactaatatt
tttataattatacgtttttttacattttttttgaatttttccaaatatat
aaatcaaaccaatcaaacattctgtcaagaaatgagaattttatgcgaaa
aagaaccaacaaaccaatagacataaagttttaaaagtttatatattttt
caaatgtgcgccaaatatgaattggcatctttggtgaaaatttgacttca
ttgatgacgtcatcaccaccTGATTATTTTCTGCCCACCAaactgaagct
ctaaagggatgtgtggaAATGAATGATCTGGGGAATAAGCTATCTCAATT
TTGTATAGACCTCACATTGCTTCAGAGAACTGGGGAACATAGAATGGCTG
ATATTGATTCCATTTTAGAATTGTTGAATGAAATGGCATTCCTGTTAATT
TACCATAGGAACTTTTCAACAGATTACAAATGCTGGCTTGACGAAAGATG
ACGAAGGAAATCTCAGTTTACCCAAATGTTTAATTGGTGGTGCAGTCTCT
GGTTGCCTTGGAGCTTTTGTTGCAAGTCCTTCATATATGGTGATTTTTTC
TAACTATTCGATATTTTCTCATTTACTTTACCCGCTTAAAAAATgtcttt
atttttattgataagTATGAGTGActttatttttaaagaactttttaggT
AAAAAGTAAGCTACTGACATCATTAACGACTACTATCTGCGACATTGTGG
AGGTCTACGATTCAGACTAGGTCAAAAGTCATTATATCCcaaaacatgtt
ttttctttcatttaatTATGTTACCTAGCTCAAAACGCAACTTCAAGCCA
AAGCAAACACAGCGATTGCAGTTGGTACACAACACGATATTCAGAGCGTC
TCATCAACACTAAAAACCATCTTCCAAAACCACGGTATCACTGGTTTATG
GCGCGGTGCTTCCGGTGCAATGTTACGCGTGACGTTTGGGTCAGCCTCCC
AGCTAACAGCCTTCTCTAAATGCAAAGAGAAGATCATAAAGAGTAAAGTT
TTCGAAGAAGGAAGCCTCATGATCCCCGTCGCGTCGAGTATGTCGGCAAG
TGTCGTGGTTGTCATGGTAATGACGCCTTTTGATGTCGTTTCTACACGGT
TATATAATCAGCCGGTATGTAAGGAGACTGGAAAAGGTTTAATGTACAAC
AATGTCTTTGATGTCTTTCGTAAGATCTTCAAGACGGAAGGTTTTGTTGG
ATTCTACAAGGGTCTGGGTCCGCATTACTTTCGTGTGGGACCGCATACAA
TTTTAAGTCTTGTCATTTGGGATAAATTTCGACAAATGCTAATGAAGGAA
CCTTGATGCACGTTTTATGTTTGTACGTCATTTTCTAGGACAGAAAACCA
CTTGTATAGGTATAGGCTAGATAGTCGAGTAGCATGACTTCTTAAATTTA
TATTCTTTCGGCTTATTTTGAATGCTCTATTTTTTTAACGAGTATTTAGT
TATTGTACATAAAATAGGACCAATTTTAGatcgaaaatattttctttacc
CAGTGTCATTAGACCAAAGAAGTTTATAATGTCGCTTAAGAATAAATTGA
AGTGGTGAAATCTCTaactca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000038XLOC_000038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000073-exon-sc0000001-1491911889:1638692..1639017TCONS_00000073-exon-sc0000001-1491911889:1638692..1639017Clytia hemisphaericaexon
TCONS_00000073-exon-sc0000001-1510915933:1638692..1639017TCONS_00000073-exon-sc0000001-1510915933:1638692..1639017Clytia hemisphaericaexon
TCONS_00000073-exon-sc0000001-1575043694:1638692..1639017TCONS_00000073-exon-sc0000001-1575043694:1638692..1639017Clytia hemisphaericaexon
TCONS_00000073-exon-sc0000001-1491911889:1639774..1639915TCONS_00000073-exon-sc0000001-1491911889:1639774..1639915Clytia hemisphaericaexon
TCONS_00000073-exon-sc0000001-1510915933:1639774..1639915TCONS_00000073-exon-sc0000001-1510915933:1639774..1639915Clytia hemisphaericaexon
TCONS_00000073-exon-sc0000001-1575043694:1639774..1639915TCONS_00000073-exon-sc0000001-1575043694:1639774..1639915Clytia hemisphaericaexon
TCONS_00000073-exon-sc0000001-1491911889:1645800..1645930TCONS_00000073-exon-sc0000001-1491911889:1645800..1645930Clytia hemisphaericaexon
TCONS_00000073-exon-sc0000001-1510915933:1645800..1645930TCONS_00000073-exon-sc0000001-1510915933:1645800..1645930Clytia hemisphaericaexon
TCONS_00000073-exon-sc0000001-1575043694:1645800..1645930TCONS_00000073-exon-sc0000001-1575043694:1645800..1645930Clytia hemisphaericaexon
TCONS_00000073-exon-sc0000001-1491911889:1646170..1646962TCONS_00000073-exon-sc0000001-1491911889:1646170..1646962Clytia hemisphaericaexon
TCONS_00000073-exon-sc0000001-1510915933:1646170..1646962TCONS_00000073-exon-sc0000001-1510915933:1646170..1646962Clytia hemisphaericaexon
TCONS_00000073-exon-sc0000001-1575043694:1646170..1646962TCONS_00000073-exon-sc0000001-1575043694:1646170..1646962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1638692..1646962 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.9947	15.7104	18.2413	19.0487	2.91637	3.1049	7.78566	9.07667	5.87337	5.08411	6.25108	5.16647	4.9394	5.09016	6.71514	8.66854	7.63394	9.49495	1.02175	1.1439	5.08176	5.33461	12.5768	8.69471	13.3103	12.4499	4.54352	3.92934	5.07279	5.6206
Blast
[Close]
BLAST of TCONS_00000073 vs. Swiss-Prot (Human)
Match: S2535 (Solute carrier family 25 member 35 OS=Homo sapiens GN=SLC25A35 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 3.296e-86
Identity = 154/294 (52.38%), Postives = 196/294 (66.67%), Query Frame = 3 
Query:  228 ECLTGGLXXXXXXVFSNPLEVVKTRMQLQGELQASGTYKVHYRNFFHAFYTIGKNDGILALQKGLGLGMTYQFIMNGIRLGTFQQITNAGLTKDDEGNLSLPKCLIGGAVSGCLGAFVASPSYMLKTQLQAKANTAIAVGTQHDIQSVSSTLKTIFQNHGITGLWRGASGAMLRVTFGSASQLTAFSKCKEKIIKSKVFEEGSLMIPXXXXXXXXXXXXXXXTPFDVVSTRLYNQPVCKETGKGLMYNNVFDVFRKIFKTEGFVGFYKGLGPHYFRVGPHTILSLVIWDKFRQM 1109
            + L  GLAAC ACVF+NPLEVVKTRMQLQGELQA GTY+ HYRN FHAF TIGK DG+ ALQKGL   + YQF+MNGIRLGT+      G     EG  S  +    GA++G +GA++ SP YM+KT LQA+A + IAVG Q+  Q +   L  I Q HG+ GLWRGA G + RV  GS++QL  FS  K+ + + ++F   S  + + ++M + + VV+ M PFDV  TRLYNQP   + GKGLMY  + D   +  +TEG  G YKG+G  YFR+GPHTILSL  WD+ R +
Sbjct:    2 DFLMSGLAACGACVFTNPLEVVKTRMQLQGELQAPGTYQRHYRNVFHAFITIGKVDGLAALQKGLAPALLYQFLMNGIRLGTYGLAEAGGYLHTAEGTHSPARSAAAGAMAGVMGAYLGSPIYMVKTHLQAQAASEIAVGHQYKHQGMFQALTEIGQKHGLVGLWRGALGGLPRVIVGSSTQLCTFSSTKDLLSQWEIFPPQSWKLALVAAMMSGIAVVLAMAPFDVACTRLYNQPTDAQ-GKGLMYRGILDALLQTARTEGIFGMYKGIGASYFRLGPHTILSLFFWDQLRSL 294
The following BLAST results are available for this feature:
BLAST of TCONS_00000073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S25353.296e-8652.38Solute carrier family 25 member 35 OS=Homo sapiens... [more]
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