TCONS_00024206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024206
Unique NameTCONS_00024206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length929

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024206 ID=TCONS_00024206|Name=TCONS_00024206|organism=Clytia hemisphaerica|type=transcript|length=929bp
GGGCCTTTTTCCCGTTTCCAAGGACATGTCAAGCGGGCGCAATTTACCTT
CATGGATGGTCCAAGTTTCCAAAAAAGAACCACAAAATAAACAATCAGat
agcACAAACACTGCGTCTGAAGAAAAGAAGTACTGTGGTagCTCGCTGCC
GTTCTTAAAGTTTCCTGGAGAAGGTATTTACACGTACCATAGTGATGAAT
GTAATACCCATTGTAAAGATATTCTTGATCGAAGCTTGCAGAAACCAATG
GTGATCGGTTTTGACATCGAATGGAAAGTCTCTTACGCACAAGGAGTTTA
CCACAAGACCGCTATCATTCAATTATGTATTGATGAAACTAAATGTTATG
TTTTTCATCTCACACATATGACTAGTTTTCCGATATTACTTAAAGAAGTT
TTGACCAATGAAAAGATCAAGAAAGTTGGTCTAGGGATCAAAGGAGATGT
TCAGCGTTTGCTTACAGACTACCACATTGAAACGAGGTCATTTCAAGATA
TTGGTTCAATAGCCAATGAAGTAACGAGAACTGGTGACAACTGGAGCTTA
AATGGTTTAGTCATGAACAAGCTCGAACATCAATTATCAAAAGATCCGAA
GGTTCGATGCAGTAATTGGGAGAATGTACCTTTATCGAAAGAACAACTTG
ATTACGCTGTCCTTGATGCTTATGCTGGATGGAAAGTTTATCACAAATTA
CTTGAATGACATTGACGATCAGGTATGTCATCATATTATTTTGAAAGTTC
TGCATCGATGATAAAAAATATAGCTAGATAGGAAAGTATAATATGCAATG
AGGGAATATTATCTTTTGTTTTCAGAATTTAATAGATCTagtaaaataat
attataatatttgatttttttaaaagacaagagtattaaaattttgaatg
taaTTTTGACACTCTTTTTGGTTCACCAG
Run BLAST on NCBI

transcript from alignment at sc0000478:179127..187153-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024206 ID=TCONS_00024206|Name=TCONS_00024206|organism=Clytia hemisphaerica|type=transcript|length=8027bp|location=Sequence derived from alignment at sc0000478:179127..187153- (Clytia hemisphaerica)
GGGCCTTTTTCCCGTTTCCAAGGTAAAGTTCTAAGTCCCGAAATTTTGAT
GAAAAGTTACGAAATTTAAAAGTCTGTAACCAACAAAATTTATCTGAAAC
CTTAACCTCCTCTTAATGTCTACTATCTATCAAAACAAACGAAAAGATCT
TCACTTTGCTGAGGTCAACAAAAATTACCCAACATGCATCTCCAAACAAA
AGTTTGTATTTCTGCACAAGGTATGTTTCTTCAGCAAAAATATTTTGTTC
AATTAAGATAATGTTGAAATCAATCAATCTATTTTATCCCCAGCTATTGC
TAAAAAAAGATGTCAATGAACTTATTATAATTCAAACCTGTTTGCTATGT
ACAACGTCAACTATGCCGATACATCGCAAAACTACTTTCCATCTATATAC
CATTCGAGACAAATATGTCTACTTCACGAAGTTCATTTCTCTACTTAAGA
GTCAAAGACACTGATTCACGAATGGTCACATACCAATCAACTTTCTTTTG
AACCTTCTCAAATTACTATTTATCATTGCAAACAAGTATTGGGCAAGAAA
GGAAAAAATCCCATGATGATGCATATTTTATTACACTTCATGCAACTTGT
CGAAGAAGAAAAAAAAGTCATGACTATTTTTGAGCTGGATTTAACCACTG
CTGACTTTAGAACTCCCTTTAACCATTAGAACACCCTAACTGTATATATT
CATATTTTTTGACTTGTGGTCTTAATACTAAAAGAAATCTAAGGAAACAA
GAACCATTAAGTATCTCCTATCAAGTGTTTCTTAAACTTCTTGTCTGTCC
ACCATCAACAAACATAAACAATAAAACTTCAAACAGTTCAAAAAAAACTG
ACCATTCGTCAAAACACGCATGCCGCCCTCGCATATTCATGTATGAGTCC
ATGTCAAGACAAGTCTATCCTGTATCAAACCAATATATCGTCCTTTCCAT
ACTTTGAAAGATCTTTTTGGGTGTGAGGGCTTGCAACTTAAGACAAATGG
TTTAACATAATGATATTGGAATTGCACTCCATCCTAAAGGTATTCCTGAA
AGCAAGAAGCATACGAAGTCCTACTTGACGTTACAAACTCTTTCAACGCA
AGGCACATTAAAATAGTATGGTACAGTCTAATTTAATAAATCAATGCTTT
CGTACTAGCTTTAGGTGTAATGATGTCGGTTTAGCTTCTTTTGTCTTGAT
AACCTATAGACTCATTATGTCGTCTCTATGAGGTGCATCTTTTCAACTGA
TGATGAAATTTTAGATTATGTGGTATTGATTCAGTGTGTTCTTAGAAACC
ATTCTCTGTTGTCAAGGGCAACCTTGACAAGGAGAGCAAATTTATCTCAT
ATTTTCGGGTCAATCTTTAGGCTTGAGTAAATTGCTATACTAAAGTCATT
AGACATAATCCATTATTTCTATTATTTATTGAGTCATTGTCAATAATAAA
ATATTACTAAAAATCACCATTTTAAGGTTAAGAGAGACTAAAGACTTATT
ATACATTTGGGGATCATGTACGAAAAGATTTCTTTCGAAAGAAGCTCATT
TCAATTACACTTGGAATTTTCTGGGGAATTCGTAAATAGTGAACTGCATA
CTGATACATTCAGCTAGACACTAATGTGGTAATATTTGCTCTTCGTCTTT
GATTCTTTCTACAGTGATTAGATTGACACATAAAAGGATTAGATTAGATT
GAAACATAAAAAGATGTTTATCTACAATCTCCGTCGAAATATATCGACAA
TTTGGGAATTTTTAACGTTTTTCAGAATTTAAAGCTCATGCGAGGATTGC
GATTTCTGTACTTCCACTTTATTTCATTGGACCTTCGATTTGGGAGGAAT
TGAGTGGATTCCAGGCTATATTCTTAGCCTTATTGGAACATTTTTTAGCT
TATCCTATAGTCCTGTATATTAGCCTAAAGTTCTACACCAGCTTGATAGT
CTATAACATAATAATCTACTCTTTTTTTAGAGCTTTTTAAGTCAACCAGA
GATAAACCTTTTTTTCAACAAAAGCACAAAACCGCTACTTGATTCTCATC
TGTCAGAAATTACAGCCTTTTTTGTCTCCACTGCAGGTTATTTTGAAACA
GACTTTACTTTAATTTGTAATTTTTGTAATAATTTTGTGAAATTTTCCTA
GTGTATCAATTCTGATTCGAAGGTCGATTTCCACATCTCCAATTGTGGGT
CTTCGAATTTTACTTCGTAGCCAATAAACATGACATTTTGGATTGATAAA
CTTTCGAGCAAGATGATCGATTTAGCATACCCTAAGTGTATATATTTTCT
CGGGTACTAAATTTTCGCAAATCGCGAAACGTATTTTGCAAGTACTAAAT
TTCGCGATTGCCACTTTCTGAAATTTTTCGCGTGTATTGAATTTTGCGAT
TCGCTAAATTGGATATTCTCAAAGAAAAGGGTGAAAACAAGAAAAAGACT
TATTTTGCTTTAAACACAACGTATTAGGCTAAAAAGATTTATTTATGTTC
CACATATTTGAAGTCACCTCTTTCATTACTACAGGACATGTCAAGCGGGC
GCAATTTACCTTCATGGATGGTCCAAGTTTCCAAAAAAGAACCACAAAAT
AAACAATCAGGTATATCTAGTAAAGTGAAATGAGAATCCACTCGCGACTA
CCTTTCCAACGTGGCACAGGTAAAACTTTTGGTGAGAAATAAATGTCCAA
GAAAATCCCTGGGAGCATCGAGCTGGGAGAAATTGACCATGCCAGGTCAT
AAGTCCCTTAAAAACACGAAGTCGGTTCAGGAGCTCTTTCCACTTACCGA
CTATTTGTGACGTCCTTTGAAAGTTCATAGGAAACTCAAGGGTCAAACTT
AAAAAAAGTGATAGGTAGCTCTAATTAGAAGCTAGAATATCTTCTTTCTT
AGAATAAGAACTCTTCTCGTTTTCTGTTAAACTTTATGTAAAAATTTGAA
AATCAGAGAACACGAACTTGAACAGACTTGAAAACGATGTTTTTCGTGGG
TCACGGGTTACTTATTTAAGTATGTATTTTGTTACTGCACTGGGTCCCTC
TGTCTTTTTTGACAGAAAAAAACAAACTTGAAAAGACTTCCTTTCCTTCC
AAGAAATTAAAGCAGTTTGGAAGTAAAAGACCGTTGGCATTTAACGCATA
TCAATCATTTCCTCCCTGTCGAAATCCAAATGTACTTTGCTGGGGGGCTT
CAAGATATTTTACTAATAATAATACTAAGAATGTAATGCTTCATTTTACT
AAAAATACGTCAACGTTGATTGTGATGCAATAATTTAGGCTGGACTTAAA
AAATTGTTGGTTTGCCGATTTTGGAGGTGGGTCGGTCGGTCGGAATTTTA
TTTTATTTTGGCGATTTATGAAATTTTCGTCCATGGAAAGGTTAACAGTT
TGTTTACATTTAGGTAATTTTGAATAAAAAACNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGG
GCTTCAAGATATTTTACAATAAAACTGAATAAGAATGTGATACTTTATTT
TACAAAAAACAAAGCCCTCTGAGTCAACGTTGATTGTGATGCAATAATTT
TACTTTACTTGAGGAGATTTTTTTTTTTTTTAGATAGCACAAACACTGCG
TCTGAAGAAAAGAAGTACTGTGGTGTAAGTCTATTATCTTTTGTGCATGC
TTAGATATATTCATTATCTGTTAGTCTTTCTCAATTGGCAATACAGCGTT
TCTAACAGGTTTCTTAAATGCTTTTTTGACCTATCTGAAGGTCCTATAAA
TTGACCTGTGTTCGTCCGTTCGTTCTTTACCAGCTTTTCTCGGATTGGCT
CATAGGGTTTTAAAGATTTTTAGCACAAAGATGTAAAATGGTATTATCCG
AAATGTGACAAAGGCTTGATTTTCGGAAAGAAAATTTTCTTTAGTTTTCA
TATCTTCTTATGTTCGTCCGTTCGTCTTAAAAATTGCCGGAACAACCTAA
ACAAGTTGCCTTCATTTTTCGAGTAACACTCGACAGATTTTCATGATCTT
TTAACAATGAAACAAAATAGTAATTCCCAAAATGTACCAGAGCCCGATTT
TCGAAAACAATCTTTTCCGGTCATCAGATCCGGAAATGTATCAGAAAAGT
GGTTTTTCGGGATTTTTTCATTAGTTTTTCCTGATTTCTTTTTTATTTTG
GATTTGATGTTTTCTGTTGATTATGTCAACGGGTAGGTCCTTAAAAGTAT
CATTTGTTATGAAAACAAGGCGCCCCACTTATGCTGACAAAGCAGAATAA
GCAATAATACTTCTTACAGGGTGTCTACGGGACCTTGAAAACCTTGAAAT
TGGACTAAGCAACCTTGAAAACCTTGAAAGTGAATGTAATGGTAAAGAAT
TCCTTGAAAACCTTGAAAATGCATGATTGCGACAGTATAGTTGTCTTGTT
TTGGCTTGGGTCCTCACTAAAGTTTCGGTCTATGCTAAACTCTAAGAAAC
TCGCAAATCATTGTTTCTAGACCAAATACTGGTAGTAACATTTCTTGCAC
TATGTCAACAGTCGTATCCTACTATCTAAGTCGATTTGAGTTCTGAAAAA
CCTTGAAAATACCCAATAAATGGTCCAAAAAACCATTGAAAAAACACTAA
AATTTTGCCAAAAAAAACCTTGGCGACAAAAATTCCGTAGACTCTTAAAA
ACTCCTAAAGTTAGACTTTAAAGTCTTAACACAAAGTTTATTGGGAATTT
GATAACTTGAAATTAGAGAAAATATCAGTGACACATTTAGCAGCATAACG
TCTATTTTTCATTTCAGAGCTCGCTGCCGTTCTTAAAGTTTCCTGGAGAA
GGTATTTACACGTACCATAGTGATGAATGTAATACCCATTGTAAAGATAT
TCTTGATCGAAGGTATCCAGTTATGCACTTCTTTAAGTGATTTTCTTCTT
TCAAATTTTCCTTACTGTCATTAAACCTTCGATGAGTATATCTTTTTATA
AAAGTATTTTTTAGTTTTAGAGAATTTCGATCTATCTGATTTTGGTTGCT
GACTATTTCATAACAGTTATATTTATCGAGAGGGTTTGATCAGACTTCAA
CAAAACTTTGTCTTTCGACTATGGTAAACTTGAACAAAAATTCATTCAGT
TTAGTTTTTGAAGCAAAATTTGTCAAGAAATGCGATTATTTTACAGGTCA
ATCTTACAGGTCAAAGGATACATGTTCTAAGTACGGGTCACAAGTCAATA
TGTCAAGTTGGGAAATGAACATATTGCACACATTTCTTTCAGCTTGCAGA
AACCAATGGTGATCGGTTTTGACATCGAATGGAAAGTCTCTTACGCACAA
GGAGTTTACCACAAGACCGCTATCATTCAATTATGTATTGATGAAACTAA
ATGTTATGTTTTTCATCTCACACATATGACTAGTAAGGCTTTTTCGTTTC
GGCTTTTGGCTCAGATTTGAAAGACTAGGACCCATACTCCTATGAGTAAG
CCTTAGGACATACTGTATGTTAAGATATACTAAAATCAATTGAAGAATGC
ATGAAAACTCGAATCTTCAGTCACACTCTAATTCGAACCTCTCTTATTAT
TCGAACTAAAATATCGGTCTCCTTAGCTGGAAAGTTGTTTAGATTACTCT
CTGTAATTCGAATCTTTCTCTAATACGAAGAAAAACTTTTAGCCCCTTGA
AGATCGAATTAGAGAGAGTCAACTGTAATTTAAAGGATGGTGCAGAAAAT
ATTTTGTTTATCTCTCCAGGTTTTCCGATATTACTTAAAGAAGTTTTGAC
CAATGAAAAGATCAAGAAAGTTGGTCTAGGGATCAAAGGGTGAGCAAGGT
TTATTGTTATCTGTGTCATATACAAGGTATAGATGACAATAATCTTTTAA
CGCTGACTGGTTGCCACGTATGCTGAAAGAAATCCTCAACGAAATATTTT
GGTTCTAAAAAACAAAGGGAATAATTTGTTCATATCAACTACTCTTCATT
AATAAACAGGGGATAGAAATTTATTTTGGCCTAGTAGATGTGGCACTTCG
TTTTCTAGATCATCATTTCCAAAAAAGCTAACATTTAGGAAATTACAAAA
AGTTTCGGAGGGGTTGTTAAATGGACAAGTAGGAGGAGGTGCGGTGCGTT
TTTCGGTTTTCTTGTACATTTATTTATGTTTCAGAGATGTTCAGCGTTTG
CTTACAGACTACCACATTGAAACGAGGTCATTTCAAGATATTGGTTCAAT
AGCCAATGAAGTAACGAGAACTGGTGACAACTGGAGCTTAAATGGTTTAG
TCATGAACAAGGTATTTGTAGAGTTAATTAGTTAATAATCACCCTAAGGG
GACGGGTGAAAAATAATACTACTTATTAGCCGCGTCCTACTTATGCGAAT
ATTTTCTTTTTGNATCAAGAAGACTGGTGACAACTGGAGCTTGAATGGTT
TAGTCATGAATAAGGTATGGTCGAGTTAAATTGTTGATAATCACCCTAAG
GGGACGGGTGAAAAATACTACTACTTATTACCCGCGTCCTACTTATGCGA
ATATTTTCTTTTTGCCTGAAAAGATAAAAAAGTTCAAGGGAGCGAAGAAA
AATGTACCTATCCAGTTTCAACTATGGATTCAGGTACTGCTATGCTTGAC
TTAATGTATATGATGAGTTTGTTTGTAATCATATTCACCTAGTACTTCTG
TTAATCGTTAGTCTTCACCAATTTTAATCTTTTGTCAAGCAATAATAGCG
AGTCAATGCACTATTGAGGCCGGTGAAGTGACTGAATCTATTTGGAATAA
CCCGCATATTTGACCCGCAAAATCAAGGACGGTAAAAGTGCTTTTGTACC
GTTGTCGCTAGTCAATCAAAATCTAGACAAATCAGAAACTAACCGACCTC
TTCGCTGGAAAAAAAAACAGATACATAAACTTGATAATATTATAAGTTAC
GCGGGTCTTCAAGGCGGTATATGATATGGGGTTATTGAGATTTATTGAAG
AAAATGCTTGTCGAGATAGAATTTCCTGGAATTTGCACTTAGACTTAGAC
GCCTTTTAAGAAAAATGCTTCTGAACAATGCTGAATTATATTAAAAAGTA
CTAACTAGAGAAATTAGTATAAAGAATAGAGTTTATGTCAGGAATCGCCC
CAGTCCTTAATCCCTTATTTCTTCTTGCAATCAGCTCGAACATCAATTAT
CAAAAGATCCGAAGGTTCGATGCAGTAATTGGGAGAATGTACCTTTATCG
AAAGAACAACTTGATTACGCTGTCCTTGATGCTTATGTATGATGATATTT
TAAGAAAATTGTACTTTTCACTCAGTTTGGTCAACGTGGGATAGATAGCT
CCCCCCTGGGCAAACACTAGATAAGCCCTATAACTATCAACCTATTCCAT
TATTTATTTTTTTGATTCAAGGAATTATACTTGAAGAACAGCCGACAAAA
GCTGTTGAAGGTTATCAGTCCATGGGGAGAGGCATGTTATCGTTCGTATA
ATGGCCCCTCACATTTTTGCAAACTTTTTTATAAGTCAAAAACCTGTTTA
TCAAATTAAAAAGCGTTTTACTTTGCTTAAAGGTGCACAATTGAAACAAT
TGTCTTTGTCGACCAATCGTTTTTTAAAACTTTTTGGCCTCCTCACTTCA
AACGGCTCGTCGGGGCCCGTGCGTAGTCACGACAGATTCCTAATTGTGAT
TAATGATTGTATATTGATTGTTCCATTTATCCTGGTATCTTTAAAAAAAT
GCAATCCAATTTGATTTTTAGGCTGGATGGAAAGTTTATCACAAATTACT
TGAATGACATTGACGATCAGGTATGTCATCATATTATTTTGAAAGTTCTG
CATCGATGATAAAAAATATAGCTAGATAGGAAAGTATAATATGCAATGAG
GGAATATTATCTTTTGTTTTCAGAATTTAATAGATCTAGTAAAATAATAT
TATAATATTTGATTTTTTTAAAAGACAAGAGTATTAAAATTTTGAATGTA
ATTTTGACACTCTTTTTGGTTCACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013580XLOC_013580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024206-exon-sc0000478-1575043694:187132..187153TCONS_00024206-exon-sc0000478-1575043694:187132..187153Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1575043694:184544..184619TCONS_00024206-exon-sc0000478-1575043694:184544..184619Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1575043694:183480..183520TCONS_00024206-exon-sc0000478-1575043694:183480..183520Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1575043694:182242..182336TCONS_00024206-exon-sc0000478-1575043694:182242..182336Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1575043694:181722..181861TCONS_00024206-exon-sc0000478-1575043694:181722..181861Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1575043694:181315..181384TCONS_00024206-exon-sc0000478-1575043694:181315..181384Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1575043694:180843..180969TCONS_00024206-exon-sc0000478-1575043694:180843..180969Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1575043694:179868..179969TCONS_00024206-exon-sc0000478-1575043694:179868..179969Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1575043694:179127..179382TCONS_00024206-exon-sc0000478-1575043694:179127..179382Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1510915933:187132..187153TCONS_00024206-exon-sc0000478-1510915933:187132..187153Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1510915933:184544..184619TCONS_00024206-exon-sc0000478-1510915933:184544..184619Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1510915933:183480..183520TCONS_00024206-exon-sc0000478-1510915933:183480..183520Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1510915933:182242..182336TCONS_00024206-exon-sc0000478-1510915933:182242..182336Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1510915933:181722..181861TCONS_00024206-exon-sc0000478-1510915933:181722..181861Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1510915933:181315..181384TCONS_00024206-exon-sc0000478-1510915933:181315..181384Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1510915933:180843..180969TCONS_00024206-exon-sc0000478-1510915933:180843..180969Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1510915933:179868..179969TCONS_00024206-exon-sc0000478-1510915933:179868..179969Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1510915933:179127..179382TCONS_00024206-exon-sc0000478-1510915933:179127..179382Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1491911889:187132..187153TCONS_00024206-exon-sc0000478-1491911889:187132..187153Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1491911889:184544..184619TCONS_00024206-exon-sc0000478-1491911889:184544..184619Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1491911889:183480..183520TCONS_00024206-exon-sc0000478-1491911889:183480..183520Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1491911889:182242..182336TCONS_00024206-exon-sc0000478-1491911889:182242..182336Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1491911889:181722..181861TCONS_00024206-exon-sc0000478-1491911889:181722..181861Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1491911889:181315..181384TCONS_00024206-exon-sc0000478-1491911889:181315..181384Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1491911889:180843..180969TCONS_00024206-exon-sc0000478-1491911889:180843..180969Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1491911889:179868..179969TCONS_00024206-exon-sc0000478-1491911889:179868..179969Clytia hemisphaericaexon
TCONS_00024206-exon-sc0000478-1491911889:179127..179382TCONS_00024206-exon-sc0000478-1491911889:179127..179382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000478supercontigsc0000478:179127..187153 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.788751	1.25626	0	0	0	0	0	0.641466	0.797055	0	0.305481	0	0	0.208398	0.135354	0	0	0.554845	0	0	0	0	0.379919	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00024206 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.810e-49
Identity = 94/227 (41.41%), Postives = 136/227 (59.91%), Query Frame = 2 
Query:   38 RNLPSWMVQVSKKEPQNKQSDSTNTASEEKKYC------GSSLPFLKFPGEGIYTYHSDECNTHCKDILDRSLQKPMVIGFDIEWKVSYAQGVYHKTAIIQLCIDETKCYVFHLTHMTSFPILLKEVLTNEKIKKVGLGIKGDVQRLLTDYHIETRSFQDIGSIANEVTRTGDNWSLNGLVMNKLEHQLSKDPKVRCSNWENVPLSKEQLDYAVLDAYAGWKVYHKL 700
            R  P WM        QNK+      A EE+K C         LPFL+F G  +Y+Y + +C+   +DI   SL    V+GFD+EW   Y +G   K A+IQLC+ E+KCY+FH++ M+ FP  LK +L N+ +KK G+GI+GD  +LL D+ I+ ++F ++  +AN+  +  + WSLN LV + L  QL KD  +RCSNW   PL+++Q  YA  DAYAG+ +Y  L
Sbjct:   13 RKCPEWM------NVQNKR-----CAVEERKACVRKSVFEDDLPFLEFTGSIVYSYDASDCSFLSEDI-SMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIKLKNFVELTDVANKKLKCTETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGFIIYRNL 227
The following BLAST results are available for this feature:
BLAST of TCONS_00024206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN4.810e-4941.41Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
back to top