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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023150 ID=TCONS_00023150|Name=TCONS_00023150|organism=Clytia hemisphaerica|type=transcript|length=1112bp
AAATTATCTGGTGGAATGGGCCGATCGTTCACTGGATGTGCAGAATTATG
CCTACATATTTGGTGCACATACCAAAAGACACAAATTTACCGTTGGCAGT
AAAATATTGGCTATTTCAAACGCAGgacTTTATGAATATTTACCAGGTGT
TGTCACCAAAGCTAATGGTGAAATATTGGAAGTACATTTTGTTAACGACT
TGAAATTACAAAACGTGGATGGATGCCAGTCGTTCTGGTTGTCTGCTGAT
TATCATCGAATGGCTTGCACATtctggaaagaaagaaacgaggaACGGAA
CTCACAGCCGTCTCCTGTTGTCAGTTAAGTGCCGTGCTAAAATGGTTGTG
GCATTTGGATTTGGTCGTATTTGGAATACAAACAACAACTTATAATGTCT
ATGAAGCATGTAAACTTTTGGCGAGGAAAAGTTCAATCGAGGAATTTATG
ATTTCAGTTTCGTcgttgaatttaatttttcaaaatatgctcttcaggtg
cctaataaacgccccGTCCCCTCTGTTTGttaatttggaaatattttcag
ctgcTTAAAGAAATTCCTTCATTTTGCTTCAAATAGCCTGGCTTCAAACC
CACCCTATCAGAGTATTCGTTTAAAGACTATTTTACGATAAAAAACATAT
TTGATAAGATATCCCCTTGATCCTAACCCgcacatttcaaaatttattca
atcattaTCATAATGCTAAAAGGATACACTTAAACTTGTTCCCAGCCCCT
TAGCTCGCTCCTGATCCCTAGCGCTCAGTAGAATCAAAAATGGTGCAAGT
GACTCTGGATACGAGATTCAGGTATACTATTTTTGTTATCTATTGATTGT
ATATAAAATGTAATATATTAACTTCAAATTGTGTGAATTTGTATTATATT
GATATTACGCAAGCTTTCCATTCGAGAATTTTTACCTATGATTCCTATAA
TTAATGTTTATTTGTACCGTAAGTTTTAACCCCTTCCCAAACGAGATAAA
TGTATTGGCTGGCCGAATAAAGGCGTGTTATCTTGCTAAAAAAAATTCGT
CTTCTGCTCtccaacaaaaaaatttcagggCCTGGTTCTATGACGATTTC
TTGCAATTACGA Run BLAST on NCBI transcript from alignment at sc0000444:62150..64758+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023150 ID=TCONS_00023150|Name=TCONS_00023150|organism=Clytia hemisphaerica|type=transcript|length=2609bp|location=Sequence derived from alignment at sc0000444:62150..64758+ (Clytia hemisphaerica)
AAATTATCTGGTGGAATGGGCCGATCGTTCACTGGATGTGCAGGTAATCT
TAGTGTAGTCTGTGTGTATTATTCTCATTAAAGGATGATCATGTTATTGT
CAGGCTTaggtgacgtcatcattctttGAAATGCCGAAATACcctgtttt
gacttttttttcactttcattaaattttttgcttAACCCTTGCGAGGTAA
CTCCATTTATCCATATCCATATCCATTGATTTTTCCACTTGCCGGTATCG
tgcaaattttccctttttgccTAATCAGGTCAATGTCACTGTCATTTTAT
GGCACTTATTCATTGTTCTTACTTGTTCAATCTTTAGAATTATGCCTACA
TATTTGGTGCACATACCAAAAGACACAAATTTACCGTTGGCAGTAAAATA
TTGGCTATTTCAAACGCAGGTGAGATACTTTTTGCGGTGACTTTCATTTG
TTTTACGGTAACTCGTTATAAATCGACCCTCAAGGAAAATTTTCGTTCAA
TCTAAACTACAATTTTCTATCGGTAATACTATGACTAATGGaaatctaat
ttgttcgaattaccgAGACACTCGAAttataaaaagtattttatGAGTGC
TTCGCCTTGACGAGGGGGTAAAAATTAGCTTGAATTATGAAAAAGATTCC
ATAAAAAACTTCGGAATTTATTTAACTGAGAAGTTTAAAATTGATATCAA
TTTTCGCGAGATACACTCGGGTGATCTTGAATGGGCGGGTAGGATGGAAA
ATTTTGCTACTTAGCTGATGGACTGGAATAAGATGTCCTGGGTGgggttt
tcaaaaagttaataagcggggggggtaACTATATAAGTTACCGAGAGtac
ttttaaacattttttggttCGGTACTTCAACTATGGAATTTAATGTACTC
TTAATAAGGAGGTTTCTTTGACGGCGTTAGACCGATTCGGTTaataaaat
atctttctttatttttcaggacTTTATGAATATTTACCAGGTGTTGTCAC
CAAAGCTAATGGTGAAATATTGGAAGTACATTTTGTTAACGACTTGAAGT
AAGAAAAATGTTGCCTTCCTACACCTTTTTAAAACTCTAATTTACAAACT
GGGACTACCTAATATAAATGGACATAAAATATGGACACCCATGTACTTGC
AAGAGATCTCTTTAAAGACTATATCCCGAGTATCGACAATAAATGCACAA
TGCATAAGTCTCTCATGAAGTGGTTGTTTTTAAAtccttgaaaaataatt
taacatGAAATgagtaccttaagtggattaattttcgcgtttttcgcgaa
tttgggctattttgcgaaatttaatccacgcgaaaattttgaaaattttt
gtttgttttgtttatttaagTACACTTTCTAGAAGACATGTTGCATACAA
aacatatttcaattttaaactttcaatCTCTAGTAACCTCTTAAGAGTAC
CTCCGTTGtagttttttttgaaagcttttgagtGAATTGGTCTGCCTTTG
TTCGATTTTTACAAATTATATAGTCAcgaaattaaataaagaaggcTTAA
ATCACGAAAATTAATTCGCTTAAGGTACATTGTCATTGACACTGtcccaa
atttgaaaaaaggttttagatttttatgaataaaaaaatttcattactaA
TTGCTAAATTAAAATTGGATAATTTAATAtgacaatatttttttaactta
gATTACAAAACGTGGATGGATGCCAGTCGTTCTGGTTGTCTGCTGATTAT
CATCGAATGGCTTGCACATtctggaaagaaagaaacgaggaACGGAACTC
ACAGCCGTCTCCTGTTGTCAGTTAAGTGCCGTGCTAAAATGGTTGTGGCA
TTTGGATTTGGTCGTATTTGGAATACAAACAACAACTTATAATGTCTATG
AAGCATGTAAACTTTTGGCGAGGAAAAGTTCAATCGAGGAATTTATGATT
TCAGTTTCGTcgttgaatttaatttttcaaaatatgctcttcaggtgcct
aataaacgccccGTCCCCTCTGTTTGttaatttggaaatattttcagctg
cTTAAAGAAATTCCTTCATTTTGCTTCAAATAGCCTGGCTTCAAACCCAC
CCTATCAGAGTATTCGTTTAAAGACTATTTTACGATAAAAAACATATTTG
ATAAGATATCCCCTTGATCCTAACCCgcacatttcaaaatttattcaatc
attaTCATAATGCTAAAAGGATACACTTAAACTTGTTCCCAGCCCCTTAG
CTCGCTCCTGATCCCTAGCGCTCAGTAGAATCAAAAATGGTGCAAGTGAC
TCTGGATACGAGATTCAGGTATACTATTTTTGTTATCTATTGATTGTATA
TAAAATGTAATATATTAACTTCAAATTGTGTGAATTTGTATTATATTGAT
ATTACGCAAGCTTTCCATTCGAGAATTTTTACCTATGATTCCTATAATTA
ATGTTTATTTGTACCGTAAGTTTTAACCCCTTCCCAAACGAGATAAATGT
ATTGGCTGGCCGAATAAAGGCGTGTTATCTTGCTAAAAAAAATTCGTCTT
CTGCTCtccaacaaaaaaatttcagggCCTGGTTCTATGACGATTTCTTG
CAATTACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023150-exon-sc0000444-1491911889:62150..62192 | TCONS_00023150-exon-sc0000444-1491911889:62150..62192 | Clytia hemisphaerica | exon |
| TCONS_00023150-exon-sc0000444-1510915933:62150..62192 | TCONS_00023150-exon-sc0000444-1510915933:62150..62192 | Clytia hemisphaerica | exon |
| TCONS_00023150-exon-sc0000444-1575043694:62150..62192 | TCONS_00023150-exon-sc0000444-1575043694:62150..62192 | Clytia hemisphaerica | exon |
| TCONS_00023150-exon-sc0000444-1491911889:62487..62568 | TCONS_00023150-exon-sc0000444-1491911889:62487..62568 | Clytia hemisphaerica | exon |
| TCONS_00023150-exon-sc0000444-1510915933:62487..62568 | TCONS_00023150-exon-sc0000444-1510915933:62487..62568 | Clytia hemisphaerica | exon |
| TCONS_00023150-exon-sc0000444-1575043694:62487..62568 | TCONS_00023150-exon-sc0000444-1575043694:62487..62568 | Clytia hemisphaerica | exon |
| TCONS_00023150-exon-sc0000444-1491911889:63119..63197 | TCONS_00023150-exon-sc0000444-1491911889:63119..63197 | Clytia hemisphaerica | exon |
| TCONS_00023150-exon-sc0000444-1510915933:63119..63197 | TCONS_00023150-exon-sc0000444-1510915933:63119..63197 | Clytia hemisphaerica | exon |
| TCONS_00023150-exon-sc0000444-1575043694:63119..63197 | TCONS_00023150-exon-sc0000444-1575043694:63119..63197 | Clytia hemisphaerica | exon |
| TCONS_00023150-exon-sc0000444-1491911889:63851..64758 | TCONS_00023150-exon-sc0000444-1491911889:63851..64758 | Clytia hemisphaerica | exon |
| TCONS_00023150-exon-sc0000444-1510915933:63851..64758 | TCONS_00023150-exon-sc0000444-1510915933:63851..64758 | Clytia hemisphaerica | exon |
| TCONS_00023150-exon-sc0000444-1575043694:63851..64758 | TCONS_00023150-exon-sc0000444-1575043694:63851..64758 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000444 | supercontig | sc0000444:62150..64758 + |
Blast
The following BLAST results are available for this feature:
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