TCONS_00002188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002188
Unique NameTCONS_00002188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002188 ID=TCONS_00002188|Name=TCONS_00002188|organism=Clytia hemisphaerica|type=transcript|length=255bp
AGATATGTGTGTTTTTATATTGACTTTAGGTTCACCAGAGCATCTTACCG
ATCCGGGAAGAAAAGGATGGTTGGGTGCACCACTTTGCACCTGGTGGTGT
CTGTTGTCACGACGATGGCACTCTCTTCTCTAACCTTATGTCGCACCTTA
TCAAATGTTGTTGTAAGCGAAAAAAGATGCTGCTGACGTTAAAAAACACA
ATGTTGGGTTTGTTCACTTTGATGGCCATCCGAGGTGACAAATATTGCAT
CGAGG
Run BLAST on NCBI

transcript from alignment at sc0000018:1042377..1043220-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002188 ID=TCONS_00002188|Name=TCONS_00002188|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at sc0000018:1042377..1043220- (Clytia hemisphaerica)
AGATATGTGTGTTTTTATATTGACTTTAGGTTCACCAGAGCATCTTACCG
ATCCGGGAAGAAAAGGATGGTTGGGTGCACCACTTTGCACCTGGTGGTGT
CTGTTGTCACGACGATGGCACTCTCTTCTCTAACCTTGTAAGCATGATTG
GAATTGAAAGTGTCTGAGCAAATAGTATATACTACAACAAGTCTTGTGCT
CAACACAACAAGAAGATAATGATCATTTATATTTCGAAACCCTGTGAAAT
CTGTTACGTTTTAGACAAAATTTGACGGCAATCCTACTCTACTCGACAGA
ATTTAGAGCTACAATTGCCTGTATTTTTCATGTGTTTGAGACTTGTTGTA
GTTATCTTTTTTACAACCTAAGAGCTGGCCCCTTATTAGCATGGCTTTCT
TATTTAATCCCATCCTCTTCTTATTGAAGATTTTTTCTATTCTCAAAGAT
GAATGTTATTGCCTTGATATTTTACCTCCCACCCCGATTCAAATGTACTT
TTCCTGATCCTCAAATATAAAAGTAGGGTCAACCTTTAAGATCCGTTACA
TCTTTTGCGGGACGCAACTGAATGTGATTTAACGGATTTTAATGAATGGT
TTTTCTCAACTATAAAGCCTCTACCAAGGGATAAAACGATCAAATTATCA
TATCGACGATCAAAAATTATTTGATGTGCAAGTAAGCCTGAATATAACAT
GTTTCACATCCTTCTAATATTCTTAGATGTCGCACCTTATCAAATGTTGT
TGTAAGCGAAAAAAGATGCTGCTGACGTTAAAAAACACAATGTTGGGTTT
GTTCACTTTGATGGCCATCCGAGGTGACAAATATTGCATCGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001139XLOC_001139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002188-exon-sc0000018-1575043694:1043084..1043220TCONS_00002188-exon-sc0000018-1575043694:1043084..1043220Clytia hemisphaericaexon
TCONS_00002188-exon-sc0000018-1575043694:1042377..1042494TCONS_00002188-exon-sc0000018-1575043694:1042377..1042494Clytia hemisphaericaexon
TCONS_00002188-exon-sc0000018-1510915933:1043084..1043220TCONS_00002188-exon-sc0000018-1510915933:1043084..1043220Clytia hemisphaericaexon
TCONS_00002188-exon-sc0000018-1510915933:1042377..1042494TCONS_00002188-exon-sc0000018-1510915933:1042377..1042494Clytia hemisphaericaexon
TCONS_00002188-exon-sc0000018-1491911889:1043084..1043220TCONS_00002188-exon-sc0000018-1491911889:1043084..1043220Clytia hemisphaericaexon
TCONS_00002188-exon-sc0000018-1491911889:1042377..1042494TCONS_00002188-exon-sc0000018-1491911889:1042377..1042494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:1042377..1043220 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07021	2.32209	0	0	22.3692	8.4094	26.0752	18.334	19.3889	15.3995	20.7669	7.46895	14.666	17.01	9.25017	14.1809	21.3669	12.1987	41.1007	40.7451	11.7907	7.86084	2.46496	9.61687	0	16.1857	0	8.96728	20.3839	8.58393
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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