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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002094 ID=TCONS_00002094|Name=TCONS_00002094|organism=Clytia hemisphaerica|type=transcript|length=2755bp
CATCTAAGTTCCGCTATATCAAAAAGGCTAGTTCACACTGAGAGCCGTAT
TCACACAGCTTACACATAAATCTGAACTGAGTATTCAACTCACACTTTTA
TATACTGGCGGAGGAAAAGAAAGGGCTTTTAGTGATAAAGGAACTCACAC
ATTGAGCTTTTCATCATTAATCAACTGATAATTTTACTTAATTTGTGTTG
CTTCACTCACATGAATCACTAGAATTTTGCATATTGAAATCACTTTTAAA
TTTACCTTGTGATTGCTGGTTGGAAAGAAAAACTAACTTTTGAGTGCCCC
TGCATCGTCAGCGCCAGAGACGACTCCTACGACATCTGCGACAACCATGG
AACAAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTGGTTGACTCCGCC
ACCTCCACAGCTAACCCAGCTCCGTATTACACATACAGCCAAGACCCTTC
ATCCTACACTGATTACTACAGATCTAGTGTTTACGCTAGTCGTAACGTAC
CGCCCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCGTATTACGCTGCT
CCGTACGCGGATCCTCATTACCACCACCATTACTACTCCCAGTATCAAAT
GCTCAACATGAACACACAACAAAAAGAGTTAGTCAAACCACCTTATTCAT
ACATCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCAGAAAAAAAACTA
ACACTCAGCGGCATTTATCAATTTATTATGGATCGCTTCCCATATTACCG
TCAAAACAAACAAGGTTGGCAGAATTCTATCCGTCACAATCTCAGCTTGA
ACGAATGTTTCTTGAAAGTTCCCAGAGATGATAATAAACCAGGAAAAGGT
AGTTATTGGGCTTTGGATCCTGATTCCATCAATATGTTTGAGAATGGGAG
TTACTTACGACGACGCAGGCGATTCAGGAAGAAAGACATCAAGAAGGAGG
ATATGGGAGAGGGAGATGACCTccttgatgaagaagaagaagccaAGGTA
TGGGCTAACACTACCCATGGTCGTATGCATCCACATCCTGAACAAACCCT
TCATCTAGTAGGAGAAGGACGACAACCACAATTTCTTCCACCTAAAGAAG
ACcatcaaaagaaaatcatgCATCCACATCAACAGAGTCTCCCAACCTCA
CCATCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGACCATTACTTTAGG
CCAGGAACAACCTGCCATCCACCCTGCAGCTAAGATGAACACACAACAAC
CTCATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAGCATTCTGAAACA
ACTCCTAAAAACGGGGAAGTCACAGAAGAAGATAAACTGAATCAAGACAA
GGATAAAGCGACACCACAATCCGTTCATTTATACGAAAACGGACAACGGG
CCACTTATCCGGAAAGCACATTAACATATACCAATTTAGACTCGAACTTT
TTAAGTTATAATAACTTGAACTATAGTTTTGCAGACACGAGTACCTCAGT
GACGGCTGCACGTTACGCGGCTGAACGAGGTCTCACGGGAGCTCCGCCAC
CTCTTGATTTTATAACTCGTGGAGCACCAACCGATATTTCAAGCGTTGTA
CAACCTCGTGGTATGGAAGGCACAGGATCGGCAGCATCTCGTCTCTCCGA
ACTTGCATCGTCATCTACCACCGACCTTTACTCTGTATCAACCTCTCGAT
TCATGTCACCACCCAACAGTCCTTTCCCTAATGGTGAGAGTCGAGACTTC
TACCTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCACGTTCAACGCAGT
ACCGGGGACCACTGACCAAGACCGTATTACATCTTTCTACTCTCCCTATC
GCTCATCAACGACATCCGCCTACCAACAGTATTAATGCTAAGAGACACTT
TAACTAAATGAACTTGTTCATTCCATATAGatgaaatttatttaaaattt
atacaaaaaagagaaatttaagCTCAGGATTGAAacgacattttttaaat
gctaGATCCGCAACtgtttctttacttttttagaataatttcttcttcat
attttttttttgaaaacaatatatttttttccgcagcaattttatatata
tatattttacctacaatgttatttattttaataaagCCCACGTGGGAAGC
TTTATACCTAGAATATAAtagtaaaaaaaactttttgcatatattttttg
aattagatttttttGTGAACTTTACTCTCTTGTCAAAAACCTTATCTTTC
TTAAACCCTAGAACAACTCTGATACCCAAATTAGTCGTCGTTTTCAGGGT
TGGCTTAAGTAAGTGCTTGGtctttcaaaataacaaaaacaactcCAGTT
TAAAAGCTCATACGATTAATTTAAGACCTTGTTTCCAACTTTGCAGAATA
CACTactggaattttttttacccctCACCAATTTAGAACAGTTCATTTTC
TACCTTAAACGATTTTTACTGTACATactcaaaaaatattctcaactcAA
CGAAAAACAGGCCTTTTTAAGGTCCTCTTAGAAGGGAAAtgttattttgt
ttaaaaatgttgGCCTCTTACATTTGTTTAGTCTCAAATTAGGAAAgctt
tgtttttgtgtttttgcaACCAATATTATTTATTTGAGCAGCGAAAAGAG
TAACAAAAACATTAGAAAAGGCAATATACACAAGCTAGAGATCAGTACAA
CATTACTTTTCAGAAAGGCTAGATGAGGATAGACTTTTCTTCATATTGAG
GTTTA Run BLAST on NCBI transcript from alignment at sc0000018:933936..937292+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002094 ID=TCONS_00002094|Name=TCONS_00002094|organism=Clytia hemisphaerica|type=transcript|length=3357bp|location=Sequence derived from alignment at sc0000018:933936..937292+ (Clytia hemisphaerica)
CATCTAAGTTCCGCTATATCAAAAAGGCTAGTTCACACTGAGAGCCGTAT
TCACACAGCTTACACATAAATCTGAACTGAGTATTCAACTCACACTTTTA
TATACTGGCGGAGGAAAAGAAAGGGCTTTTAGTGATAAAGGAACTCACAC
ATTGAGCTTTTCATCATTAATCAACTGATAATTTTACTTAATTTGTGTTG
CTTCACTCACATGAATCACTAGAATTTTGCATATTGAAATCACTTTTAAA
TTTACCTTGTGATTGCTGGTTGGAAAGAAAAACTAACTTTTGAGTAAGat
catttaattttcaaaatagaagtTGTTTTTTGTTATTCTTGCTAAACTTT
ATATTAGATCCTGTATTCTACCACGTATAGAATTCTGACtgattattttt
tcttaatttttttctgaacttaAATTCAAAACACAGGGCATGTTTTCAAA
GAATACATTTCAGTGTCAGAAGGTTCTCAATATCACTTCTTGTTTTCATT
CTTAATAATCTTGAACCAAATGATCGAGATTCTGACTGATTGATGTCAAA
AGTTTATTACTTTAAAACTAACATTTCCCGCTTCgtatttttttctataa
tttttcatttttatcaagtTATAAAATCACCACAAACTTTTAAAACTCAC
TCGAACGACGTTAAATAACGTTAAAAGATTGAGCAAATCTTGTTAAGTTT
TGGCATTGTCAAATTCATGTCATTATAGTTGCGCGCTTGTTAGGTGCTAT
CTATTCAAAttaattgtgtttttttttgtttgatcagtattaaaaactaa
atattttcaattttaatttgttCTAATTTTTCAGGTGCCACTGCATCGTC
AGCGCCAGAGACGACTCCTACGACATCTGCGACAACCNTTTTCAGGTGCC
CCTGCATCGTCAGCGCCAGAGACGACTCCTACGACATCTGCGACAACCAT
GGAACAAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTGGTTGACTCCG
CCACCTCCACAGCTAACCCAGCTCCGTATTACACATACAGCCAAGACCCT
TCATCCTACACTGATTACTACAGATCTAGTGTTTACGCTAGTCGTAACGT
ACCGCCCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCGTATTACGCTG
CTCCGTACGCGGATCCTCATTACCACCACCATTACTACTCCCAGTATCAA
ATGCTCAACATGAACACACAACAAAAAGAGTTAGTCAAACCACCTTATTC
ATACATCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCAGAAAAAAAAC
TAACACTCAGCGGCATTTATCAATTTATTATGGATCGCTTCCCATATTAC
CGTCAAAACAAACAAGGTTGGCAGAATTCTATCCGTCACAATCTCAGCTT
GAACGAATGTTTCTTGAAAGTTCCCAGAGATGATAATAAACCAGGAAAAG
GTAGTTATTGGGCTTTGGATCCTGATTCCATCAATATGTTTGAGAATGGG
AGTTACTTACGACGACGCAGGCGATTCAGGAAGAAAGACATCAAGAAGGA
GGATATGGGAGAGGGAGATGACCTccttgatgaagaagaagaagccaAGG
TATGGGCTAACACTACCCATGGTCGTATGCATCCACATCCTGAACAAACC
CTTCATCTAGTAGGAGAAGGACGACAACCACAATTTCTTCCACCTAAAGA
AGACcatcaaaagaaaatcatgCATCCACATCAACAGAGTCTCCCAACCT
CACCATCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGACCATTACTTTA
GGCCAGGAACAACCTGCCATCCACCCTGCAGCTAAGATGAACACACAACA
ACCTCATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAGCATTCTGAAA
CAACTCCTAAAAACGGGGAAGTCACAGAAGAAGATAAACTGAATCAAGAC
AAGGATAAAGCGACACCACAATCCGTTCATTTATACGAAAACGGACAACG
GGCCACTTATCCGGAAAGCACATTAACATATACCAATTTAGACTCGAACT
TTTTAAGTTATAATAACTTGAACTATAGTTTTGCAGACACGAGTACCTCA
GTGACGGCTGCACGTTACGCGGCTGAACGAGGTCTCACGGGAGCTCCGCC
ACCTCTTGATTTTATAACTCGTGGAGCACCAACCGATATTTCAAGCGTTG
TACAACCTCGTGGTATGGAAGGCACAGGATCGGCAGCATCTCGTCTCTCC
GAACTTGCATCGTCATCTACCACCGACCTTTACTCTGTATCAACCTCTCG
ATTCATGTCACCACCCAACAGTCCTTTCCCTAATGGTGAGAGTCGAGACT
TCTACCTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCACGTTCAACGCA
GTACCGGGGACCACTGACCAAGACCGTATTACATCTTTCTACTCTCCCTA
TCGCTCATCAACGACATCCGCCTACCAACAGTATTAATGCTAAGAGACAC
TTTAACTAAATGAACTTGTTCATTCCATATAGatgaaatttatttaaaat
ttatacaaaaaagagaaatttaagCTCAGGATTGAAacgacattttttaa
atgctaGATCCGCAACtgtttctttacttttttagaataatttcttcttc
atattttttttttgaaaacaatatatttttttccgcagcaattttatata
tatatattttacctacaatgttatttattttaataaagCCCACGTGGGAA
GCTTTATACCTAGAATATAAtagtaaaaaaaactttttgcatatattttt
tgaattagatttttttGTGAACTTTACTCTCTTGTCAAAAACCTTATCTT
TCTTAAACCCTAGAACAACTCTGATACCCAAATTAGTCGTCGTTTTCAGG
GTTGGCTTAAGTAAGTGCTTGGtctttcaaaataacaaaaacaactcCAG
TTTAAAAGCTCATACGATTAATTTAAGACCTTGTTTCCAACTTTGCAGAA
TACACTactggaattttttttacccctCACCAATTTAGAACAGTTCATTT
TCTACCTTAAACGATTTTTACTGTACATactcaaaaaatattctcaactc
AACGAAAAACAGGCCTTTTTAAGGTCCTCTTAGAAGGGAAAtgttatttt
gtttaaaaatgttgGCCTCTTACATTTGTTTAGTCTCAAATTAGGAAAgc
tttgtttttgtgtttttgcaACCAATATTATTTATTTGAGCAGCGAAAAG
AGTAACAAAAACATTAGAAAAGGCAATATACACAAGCTAGAGATCAGTAC
AACATTACTTTTCAGAAAGGCTAGATGAGGATAGACTTTTCTTCATATTG
AGGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002094-exon-sc0000018-1491911889:933936..934228 | TCONS_00002094-exon-sc0000018-1491911889:933936..934228 | Clytia hemisphaerica | exon |
| TCONS_00002094-exon-sc0000018-1510915933:933936..934228 | TCONS_00002094-exon-sc0000018-1510915933:933936..934228 | Clytia hemisphaerica | exon |
| TCONS_00002094-exon-sc0000018-1575043694:933936..934228 | TCONS_00002094-exon-sc0000018-1575043694:933936..934228 | Clytia hemisphaerica | exon |
| TCONS_00002094-exon-sc0000018-1491911889:934831..937292 | TCONS_00002094-exon-sc0000018-1491911889:934831..937292 | Clytia hemisphaerica | exon |
| TCONS_00002094-exon-sc0000018-1510915933:934831..937292 | TCONS_00002094-exon-sc0000018-1510915933:934831..937292 | Clytia hemisphaerica | exon |
| TCONS_00002094-exon-sc0000018-1575043694:934831..937292 | TCONS_00002094-exon-sc0000018-1575043694:934831..937292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:933936..937292 + |
Blast
BLAST of TCONS_00002094 vs. Swiss-Prot (Human)
Match: FOXC2 (Forkhead box protein C2 OS=Homo sapiens GN=FOXC2 PE=1 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 5.632e-52 Identity = 82/95 (86.32%), Postives = 92/95 (96.84%), Query Frame = 2
Query: 623 KELVKPPYSYIALISMAIQSSPEKKLTLSGIYQFIMDRFPYYRQNKQGWQNSIRHNLSLNECFLKVPRDDNKPGKGSYWALDPDSINMFENGSYL 907
K+LVKPPYSYIALI+MAIQ++PEKK+TL+GIYQFIMDRFP+YR+NKQGWQNSIRHNLSLNECF+KVPRDD KPGKGSYW LDPDS NMFENGS+L
Sbjct: 68 KDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 162
The following BLAST results are available for this feature:
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