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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022079 ID=TCONS_00022079|Name=TCONS_00022079|organism=Clytia hemisphaerica|type=transcript|length=1543bp
CAGTgacattatattatatttatttcaagactaatacagaaaaaataaat
acaaacgTAAGATCAGACTCTGAAACCATAAGTGAGATACTAAActatca
aaaaattaaaataaaaaaacttgttaGGTCTAACCCCTATGAATTCAAAA
TGAATTACCTGAAAATCTACGCCAACAGTAGTTTGCAATGTATCAATATT
TGATTCTGTATTGCAGAATTGTTTCATTAGAGTGCTCTTACCAACTCCTC
CATCACCAATAATAATTACTTTGTAGATGTAATCATAAAAATCATTGTTA
CTGCATAAACCGTCCATCTCTCAGTTGTCTCATGCCCAACATAGTCACCT
TTctaattttcaaccttttttttactaaataaaTCAGTATAAAAgttaat
tataaaaaaaacaccctAAATCTCAGGATTAGCATTATTCCAAAAGAAAA
TCATTAGGGAATGAACGATCTATAATGATTTATGACATGACTCAAGGCCG
GTCTCTGTGCGCGCTGTGATCGCACCTTTTCGCTTCAGAccttttagctt
ggaaaaaagattacgtcataaaaatccagtgcgcgctcgaaaaaaaccgt
tacgtcagatcgggccaatggaattgcttcatttttcttttgaccaatag
cgtggtaCCTTTGTTCGAAAAAGTgtgatcgcagcgcgcgcaagtggaga
ccggctcGCAGTAATCTCTGATAGTAAAAACATTCTAATTACTCTAAACA
TCTAACTCATCTACATTCCACCAGAAAGTTTTAGATATTCTCCAGTAGCA
AATGGACAAGCATCGCTGGCTAACCAGTAAACAGCTTCTGCTACTTCTTC
TGGCGTACAAATCCTACCAACCGGGTAACGAGCATCAGTTGCTGTTTGCC
AATCAGGCCATTGGTTTTTAAACCGATCCCTCATAGCAGTATCGGTAGTT
GCAGGGCAGACAGCATTGACACGTATTCCATTAGCAGCATACTCCTTAGC
AGCTGTTTGTGTGAGTCCAATGATACCCCATTTTGAAGCACAGTAGGGTG
AAAATTCAGGCATGCCTGTAAAACCTGCAGTACTGCTTGTATTAATTATA
GAGCCCCTACTGCCTTTATATTTAGAGAAATCTGCTTTATTTCTCCATTT
GCTTGGGTCAGCAATGATCAAATCTTGTTTCAACATTTGTTTTAGTTCAT
ATTTCATACAAAGCCAGATACCTTTTAAATTTACATCAATCACTTTATGA
AACATCTCTGTAGGgtattcatcaattttcaatCTTAGTCCTTCAACACC
AGCATTGTTAAATGCAACATCAAGAAACTCAAATTTTTGAATAATAGCAT
CCATCATCTTTTTCACACTTACTTCATTACTGACATCAACTTCCAGAGCC
AATCCTTCAGTCTTTAAAAGTAATACTGTTTCTTTGGCAGCATTAAGATT
TACATCAGCAACAACAACATGAAAGCCATTGTCAGCAAACTTAATTGCAG
CTGAACGACCTATTCCACTGCCGCCACCAGTTACCAAAGCTAC Run BLAST on NCBI transcript from alignment at sc0000403:200342..201914- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022079 ID=TCONS_00022079|Name=TCONS_00022079|organism=Clytia hemisphaerica|type=transcript|length=1573bp|location=Sequence derived from alignment at sc0000403:200342..201914- (Clytia hemisphaerica)
CAGTGACATTATATTATATTTATTTCAAGACTAATACAGAAAAAATAAAT
ACAAACGTAAGATCAGACTCTGAAACCATAAGTGAGATACTAAACTATCA
AAAAATTAAAATAAAAAAACTTGTTAGGTCTAACCCCTATGAATTCAAAA
TGAATTACCTGAAAATCTACGCCAACAGTAGTTTGCAATGTATCAATATT
TGATTCTGTATTGCAGAATTGTTTCATTAGAGTGCTCTTACCAACTCCTC
CATCACCAATAATAATTACTTTGTAGATGTAATCATAAAAATCATTGTTA
CTGCATAAACCGTCCATCTCTCAGTTGTCTCATGCCCAACATAGTCACCT
TTCTAATTTTCAACCTTTTTTTTACTAAATAAATCAGTATAAAAGTTAAT
TATAAAAAAAACACCCTAAATCTCAGGATTAGCATTATTCCAAAAGAAAA
TCATTAGGGAATGAACGATCTATAATGATTTATGACATGACTCAAGGCCG
GTCTCTGCGCGCGCTGTNGACTCAAGGCCGGTCTCTGTGCGCGCTGTGAT
CGCACCTTTTCGCTTCAGACCTTTTAGCTTGGAAAAAAGATTACGTCATA
AAAATCCAGTGCGCGCTCGAAAAAAACCGTTACGTCAGATCGGGCCAATG
GAATTGCTTCATTTTTCTTTTGACCAATAGCGTGGTACCTTTGTTCGAAA
AAGTGTGATCGCAGCGCGCGCAAGTGGAGACCGGCTCGCAGTAATCTCTG
ATAGTAAAAACATTCTAATTACTCTAAACATCTAACTCATCTACATTCCA
CCAGAAAGTTTTAGATATTCTCCAGTAGCAAATGGACAAGCATCGCTGGC
TAACCAGTAAACAGCTTCTGCTACTTCTTCTGGCGTACAAATCCTACCAA
CCGGGTAACGAGCATCAGTTGCTGTTTGCCAATCAGGCCATTGGTTTTTA
AACCGATCCCTCATAGCAGTATCGGTAGTTGCAGGGCAGACAGCATTGAC
ACGTATTCCATTAGCAGCATACTCCTTAGCAGCTGTTTGTGTGAGTCCAA
TGATACCCCATTTTGAAGCACAGTAGGGTGAAAATTCAGGCATGCCTGTA
AAACCTGCAGTACTGCTTGTATTAATTATAGAGCCCCTACTGCCTTTATA
TTTAGAGAAATCTGCTTTATTTCTCCATTTGCTTGGGTCAGCAATGATCA
AATCTTGTTTCAACATTTGTTTTAGTTCATATTTCATACAAAGCCAGATA
CCTTTTAAATTTACATCAATCACTTTATGAAACATCTCTGTAGGGTATTC
ATCAATTTTCAATCTTAGTCCTTCAACACCAGCATTGTTAAATGCAACAT
CAAGAAACTCAAATTTTTGAATAATAGCATCCATCATCTTTTTCACACTT
ACTTCATTACTGACATCAACTTCCAGAGCCAATCCTTCAGTCTTTAAAAG
TAATACTGTTTCTTTGGCAGCATTAAGATTTACATCAGCAACAACAACAT
GAAAGCCATTGTCAGCAAACTTAATTGCAGCTGAACGACCTATTCCACTG
CCGCCACCAGTTACCAAAGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022079-exon-sc0000403-1575043694:201419..201914 | TCONS_00022079-exon-sc0000403-1575043694:201419..201914 | Clytia hemisphaerica | exon |
| TCONS_00022079-exon-sc0000403-1575043694:200342..201388 | TCONS_00022079-exon-sc0000403-1575043694:200342..201388 | Clytia hemisphaerica | exon |
| TCONS_00022079-exon-sc0000403-1510915933:201419..201914 | TCONS_00022079-exon-sc0000403-1510915933:201419..201914 | Clytia hemisphaerica | exon |
| TCONS_00022079-exon-sc0000403-1510915933:200342..201388 | TCONS_00022079-exon-sc0000403-1510915933:200342..201388 | Clytia hemisphaerica | exon |
| TCONS_00022079-exon-sc0000403-1491911889:201419..201914 | TCONS_00022079-exon-sc0000403-1491911889:201419..201914 | Clytia hemisphaerica | exon |
| TCONS_00022079-exon-sc0000403-1491911889:200342..201388 | TCONS_00022079-exon-sc0000403-1491911889:200342..201388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000403 | supercontig | sc0000403:200342..201914 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
BLAST of TCONS_00022079 vs. Swiss-Prot (Human)
Match: DHB8 (Estradiol 17-beta-dehydrogenase 8 OS=Homo sapiens GN=HSD17B8 PE=1 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 1.963e-25 Identity = 96/277 (34.66%), Postives = 136/277 (49.10%), Query Frame = -1
Query: 758 VALVTXXXXXXXXXXXIKFADNGFHVVVADVNLNAAKETVLLLKTEG----------LALEVDVSNEVSVKKMMDAIIQKFEFL-DVAFNNAGVEGLRLKIDEYPTEMFH----KVIDVNLKGIWLCMKYELKQMLKQDLIIADPSKWRNKADFSKYKGSRGSIINTSSTAGFTGMPEFSPYCASKWGIIGLTQTAAKEYAANGIRVNAVCPATTDTAMRDRFKNQWPDWQTATDARYPVGRICTPEEVAEAVYWLASDACPFATGEYLKLSGGM*M 1543
+ALVTG GSGIGR+ +++ A G V D++ AA+ETV LL G A + DVS + + +++ + F V + AG+ DE+ M KVI VNLKG +L + Q Q L+ G RGSIIN SS G G + Y ASK G+IGLTQTAA+E +GIR N+V P T M + + D T P+G + PE+VA+ V +LAS+ + TG ++++GG+ M
Sbjct: 13 LALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI-----TQDEFLLHMSEDDWDKVIAVNLKGTFL-----VTQAAAQALV---------------SNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEM---IPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLFM 261
The following BLAST results are available for this feature:
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