TCONS_00021811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021811
Unique NameTCONS_00021811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1113

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021811 ID=TCONS_00021811|Name=TCONS_00021811|organism=Clytia hemisphaerica|type=transcript|length=1113bp
cttctttctctaAAATCCTACATTAAAAGGTTCCCTAATTGACCTTTTAG
ACTCTTATTTATCGGAATTTCGTTTGATTCTTGAAAGATTCATTTAAATT
TATATCCCATAGCGGGGTGCATCCAAGCCTTTAAATACATCATTTCGCTG
ATGAATTTTTCCCTTTTATAGGCTTTCTATTAACGGTACGAATAAGCTCA
AaattcatgtttttctgattaTTATACAAGAAGGAAGAAAAGTACTTTCG
AAGAAGGAAGTTTTCTATTTTGTTGAAGAAAATGTTATCATCCAGCTTTT
ATTAATCGCTTACGAATTATCATTGATGATATTTGTCAATgaaggaaatt
ttcaaattatgacGCCATTTTCTGATAGGTTGTACGTAACTTGAACTTGA
CGGTTTATGGATAAGATCTTACTCTAACTTTCGCTCGGACTCTTGAAGGA
AGGAATATGTTTAAGTTAGAGTTTAGCATAGCTATGGTGGTATTGATAGG
GCGTTGTGGAATCTATGGAAACCAAGATGAATCTCAAAAGACTCCCTTCT
TCGACGAACAGAACGAAAATTCGTACGAAAAGTTCCTCATCACTGACCCA
TACAGAGAAATCAAATTCCAAAAACCcatctttaaaaatttctccTCCAT
TTTTATCAATCACAACGGAATTTTAGGATTCGATCATAATGTTCATCGCG
CTCTTATCCCATCTTCGGACACCCAATTCATCGCCCTTTATCACAAGAAA
ACCACCCTTTCGCTCACTTCCGCCATCTTGTTCCGTCACACAGATCAGCC
ATCAGCGTTAGcggaaatccgcgaaattataCGCGAAAACTTTGACCGTA
GTTATGAGCCGACATCAGCTTTAATCGTAACCTACCGTGATGTTTGTGAT
CAAATGATTCAAGAGAAAAAGTTCACCTACCAAGCTACCATAGTAACAGA
TACAACAAATATCTATCTTTTGATCAATTACCAGAGTCTTGGCATGTCCG
GTGCAGTGACCGGCTATTCTTTCGATGAGAAATGTGAGTTTGAAGCCTTC
GCTCCGGTCACCACAAGTGAGAAGTTACAACAAACATCCAATATTGGAAA
GAAAGGCTTGCAC
Run BLAST on NCBI

protein sequence of TCONS_00021811-protein

>TCONS_00021811-protein ID=TCONS_00021811-protein|Name=TCONS_00021811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MFKLEFSIAMVVLIGRCGIYGNQDESQKTPFFDEQNENSYEKFLITDPYR
EIKFQKPIFKNFSSIFINHNGILGFDHNVHRALIPSSDTQFIALYHKKTT
LSLTSAILFRHTDQPSALAEIREIIRENFDRSYEPTSALIVTYRDVCDQM
IQEKKFTYQATIVTDTTNIYLLINYQSLGMSGAVTGYSFDEKCEFEAFAP
VTTSEKLQQTSNIGKKGLH
Run BLAST on NCBI

transcript from alignment at sc0000395:212867..214928+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021811 ID=TCONS_00021811|Name=TCONS_00021811|organism=Clytia hemisphaerica|type=transcript|length=2062bp|location=Sequence derived from alignment at sc0000395:212867..214928+ (Clytia hemisphaerica)
cttctttctctaAAATCCTACATTAAAAGGTTCCCTAATTGACCTTTTAG
ACTCTTATTTATCGGAATTTCGTTTGATTCTTGAAAGATTCATTTAAATT
TATATCCCATAGCGGGGTGCATCCAAGCCTTTAAATACATCATTTCGCTG
ATGAATTTTTCCCTTTTATAGGCTTTCTATTAACGGTACGAATAAGCTCA
AaattcatgtttttctgattaTTATACAAGAAGGAAGAAAAGTACTTTCG
AAGAAGGAAGTTTTCTATTTTGTTGAAGAAAATGTTATCATCCAGCTTTT
ATTAATCGCTTACGAATTATCATTGATGATATTTGTCAATgaaggaaatt
ttcaaattatgacGCCATTTTCTGATAGGTTGTACGTAACTTGAACTTGA
CGGTTTATGGATAAGATCTTACTCTAACTTTCGCTCGGACTCTTGAAGGA
AGGAATATGTTTAAGTTAGAGTTTAGCATAGCTATGGTGGTATTGATAGG
GCGTTGTGGAATCTATGGAAACCAAGATGAATCTCAAAAGAGTAAGATTT
TGAAAGCTGCTTTGTCGATGGTTAAAAACTAAGTGTTCATGTAGATTGAC
ATATTTGTAATAGTCTTGAAGCACTACATTGATGCAGAATTTGCTTGAGT
ATCGCTAACATCTCTGTGTCACAAACCTAAGGATTTTATTTTTACCCACT
gataattttgaccaaaaagtcTCTGGAATTTCATCTCCAGTGGGAAATTG
TAaacaatattattattattatgaaaTTATTCGTCGGAACCATCCCACTG
AtatttttataccaaaaaacaaaatttccatCATGGCACTGATACAGGAT
GTCTATAAAATTGCACGTTGAGTGAATTAtgataaatcaaattttttagt
GTTTCTCTAAAGTTTGTTGAAATTCTCGCATTTGAAACTGCTGTTAGAAA
AACACGATACTACCCACCACACATCGCGACTGTGAATTGACGTATTAAGT
ATTCGGATGAGCACAAACAGATAATCTACTAATAAAGTCATTNTGACTGT
GAATTGACGTATTAGGTATTCGGATGAGCACAAACAGATAATCTACTAAT
AAAGTCATTTGGTTTTCCCTTTCAGCTCCCTTCTTCGACGAACAGAACGA
AAATTCGTACGAAAAGTTCCTCATCACTGACCCATACAGAGAAATCAAAT
TCCAAAAACCcatctttaaaaatttctccTCCATTTTTGTGAGTGTTTCA
TCTTTGttacttgaataaaaatacttcagttaaaaaaaaacacaacctGG
AAAATCTTCATAAATCATCTTGTGTGCTAACATGTTTAAAGTAGGTTTGT
TTTGTATTCAATGATATGTATTTGAAACCTGAATCTAACCTTTATCCATA
TTGGTGGAAACATTAATCGGAGTTTTCAGAGAAAAGTGATGCTAAGCTCA
CTGACTGCATCTTTTCAAGTTAATAACTTTTGAGATGATACCAGTCTTGT
TTTTTAAGGACCTTGGATGTTTTCTTATGACTTTCCGTAATCCTTGCCTA
GTAAAGCATCATTTATAATAATTGACTGTTCATTTATAACATTGACTTTC
TAGATCAATCACAACGGAATTTTAGGATTCGATCATAATGTTCATCGCGC
TCTTATCCCATCTTCGGACACCCAATTCATCGCCCTTTATCACAAGAAAA
CCACCCTTTCGCTCACTTCCGCCATCTTGTTCCGTCACACAGATCAGCCA
TCAGCGTTAGcggaaatccgcgaaattataCGCGAAAACTTTGACCGTAG
TTATGAGCCGACATCAGCTTTAATCGTAACCTACCGTGATGTTTGTGATC
AAATGATTCAAGAGAAAAAGTTCACCTACCAAGCTACCATAGTAACAGAT
ACAACAAATATCTATCTTTTGATCAATTACCAGAGTCTTGGCATGTCCGG
TGCAGTGACCGGCTATTCTTTCGATGAGAAATGTGAGTTTGAAGCCTTCG
CTCCGGTCACCACAAGTGAGAAGTTACAACAAACATCCAATATTGGAAAG
AAAGGCTTGCAC

Coding sequence (CDS) from alignment at sc0000395:212867..214928+

>TCONS_00021811 ID=TCONS_00021811|Name=TCONS_00021811|organism=Clytia hemisphaerica|type=CDS|length=1971bp|location=Sequence derived from alignment at sc0000395:212867..214928+ (Clytia hemisphaerica)
ATGTTTAAGTTAGAGTTTAGCATAGCTATGGTGGTATTGATAGGGCGTTG
TGGAATCTATGGAAACCAAGATGAATCTCAAAAGACTCCCTTCTTCGACG
AACAGAACGAAAATTCGTACGAAAAGTTCCTCATCACTGACCCATACAGA
GAAATCAAATTCCAAAAACCcatctttaaaaatttctccTCCATTTTTAT
CAATCACAACGGAATTTTAGGATTCGATCATAATGTTCATCGCGCTCTTA
TCCCATCTTCGGACACCCAATTCATCGCCCTTTATCACAAGAAAACCACC
CTTTCGCTCACTTCCGCCATCTTGTTCCGTCACACAGATCAGCCATCAGC
GTTAGcggaaatccgcgaaattataCGCGAAAACTTTGACCGTAGTTATG
AGCCGACATCAGCTTTAATCGTAACCTACCGTGATGTTTGTGATCAAATG
ATTCAAGAGAAAAAGTTCACCTACCAAGCTACCATAGTAACAGATACAAC
AAATATCTATCTTTTGATCAATTACCAGAGTCTTGGCATGTCCGGTGCAG
TGACCGGCTATTCTTTCGATGAGAAATGTGAGTTTGAAGCCTTCGCTCCG
GTCACCACAAGTGAGAAGTTACAACAAACATCCAATATTGGAAAGAAAGG
CTTGCACATGTTTAAGTTAGAGTTTAGCATAGCTATGGTGGTATTGATAG
GGCGTTGTGGAATCTATGGAAACCAAGATGAATCTCAAAAGACTCCCTTC
TTCGACGAACAGAACGAAAATTCGTACGAAAAGTTCCTCATCACTGACCC
ATACAGAGAAATCAAATTCCAAAAACCcatctttaaaaatttctccTCCA
TTTTTATCAATCACAACGGAATTTTAGGATTCGATCATAATGTTCATCGC
GCTCTTATCCCATCTTCGGACACCCAATTCATCGCCCTTTATCACAAGAA
AACCACCCTTTCGCTCACTTCCGCCATCTTGTTCCGTCACACAGATCAGC
CATCAGCGTTAGcggaaatccgcgaaattataCGCGAAAACTTTGACCGT
AGTTATGAGCCGACATCAGCTTTAATCGTAACCTACCGTGATGTTTGTGA
TCAAATGATTCAAGAGAAAAAGTTCACCTACCAAGCTACCATAGTAACAG
ATACAACAAATATCTATCTTTTGATCAATTACCAGAGTCTTGGCATGTCC
GGTGCAGTGACCGGCTATTCTTTCGATGAGAAATGTGAGTTTGAAGCCTT
CGCTCCGGTCACCACAAGTGAGAAGTTACAACAAACATCCAATATTGGAA
AGAAAGGCTTGCACATGTTTAAGTTAGAGTTTAGCATAGCTATGGTGGTA
TTGATAGGGCGTTGTGGAATCTATGGAAACCAAGATGAATCTCAAAAGAC
TCCCTTCTTCGACGAACAGAACGAAAATTCGTACGAAAAGTTCCTCATCA
CTGACCCATACAGAGAAATCAAATTCCAAAAACCcatctttaaaaatttc
tccTCCATTTTTATCAATCACAACGGAATTTTAGGATTCGATCATAATGT
TCATCGCGCTCTTATCCCATCTTCGGACACCCAATTCATCGCCCTTTATC
ACAAGAAAACCACCCTTTCGCTCACTTCCGCCATCTTGTTCCGTCACACA
GATCAGCCATCAGCGTTAGcggaaatccgcgaaattataCGCGAAAACTT
TGACCGTAGTTATGAGCCGACATCAGCTTTAATCGTAACCTACCGTGATG
TTTGTGATCAAATGATTCAAGAGAAAAAGTTCACCTACCAAGCTACCATA
GTAACAGATACAACAAATATCTATCTTTTGATCAATTACCAGAGTCTTGG
CATGTCCGGTGCAGTGACCGGCTATTCTTTCGATGAGAAATGTGAGTTTG
AAGCCTTCGCTCCGGTCACCACAAGTGAGAAGTTACAACAAACATCCAAT
ATTGGAAAGAAAGGCTTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012243XLOC_012243Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021811-proteinTCONS_00021811-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021811-exon-sc0000395-1491911889:212867..213407TCONS_00021811-exon-sc0000395-1491911889:212867..213407Clytia hemisphaericaexon
TCONS_00021811-exon-sc0000395-1510915933:212867..213407TCONS_00021811-exon-sc0000395-1510915933:212867..213407Clytia hemisphaericaexon
TCONS_00021811-exon-sc0000395-1575043694:212867..213407TCONS_00021811-exon-sc0000395-1575043694:212867..213407Clytia hemisphaericaexon
TCONS_00021811-exon-sc0000395-1491911889:213992..214104TCONS_00021811-exon-sc0000395-1491911889:213992..214104Clytia hemisphaericaexon
TCONS_00021811-exon-sc0000395-1510915933:213992..214104TCONS_00021811-exon-sc0000395-1510915933:213992..214104Clytia hemisphaericaexon
TCONS_00021811-exon-sc0000395-1575043694:213992..214104TCONS_00021811-exon-sc0000395-1575043694:213992..214104Clytia hemisphaericaexon
TCONS_00021811-exon-sc0000395-1491911889:214470..214928TCONS_00021811-exon-sc0000395-1491911889:214470..214928Clytia hemisphaericaexon
TCONS_00021811-exon-sc0000395-1510915933:214470..214928TCONS_00021811-exon-sc0000395-1510915933:214470..214928Clytia hemisphaericaexon
TCONS_00021811-exon-sc0000395-1575043694:214470..214928TCONS_00021811-exon-sc0000395-1575043694:214470..214928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000395supercontigsc0000395:212867..214928 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0382703	0	0	0.105849	0.25093	0	0.188945	0.0661425	0.0819282	0	0.0522743	1.01793	0.271059	0.0668543	0.215235	1.50253	2.35536	1.25156	1.87719	1.66956	1.77677	0.359983	0.368186	1.51689	1.12816	0.161439	0.114862	0.0435592	0.0443799
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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