TCONS_00021214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021214
Unique NameTCONS_00021214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021214 ID=TCONS_00021214|Name=TCONS_00021214|organism=Clytia hemisphaerica|type=transcript|length=3526bp
CATAAAGTTCGGATAGCCGAGTCTACAAGGACTGGTCCTTTGGAGTAATT
CTCACAAAGTTTTTAATTATCGCGTGTGTGGGTTGCTTGGAGTTGTTCTG
CCAAGAATTAAGCCATTATTCGTTTTGACATTATTGTTGTGTATaaatac
ttttcaaattttgaatgcGTGGGTTTTTTGATATGGCTCCGCTTCAAATT
AATACACCGCCAACAGCCGCCGCAGATAACAAAATATCAGTTCTTTGTCT
ACCGGTGTTTAACGATTTGCGTAATTTTTGGTTACTTCCACCACCGCCCA
CGCATCCGCCCTTGGTTGTGGCGTCACAATTACATCATCATGGCTTTCTT
ACAAATTGTTCTTGCGCCACACCAAAATCGAACACCACAGAACATGGCGG
TGCCGATTCAGCAGATGATGAAGAAGAGGGCGTTGATTTACGTTGTAAGT
GGCGGGACTGTGGTGTTCTTTTTGACGCCCAAAGTAAATTGGTTCAACAC
GTGAATACGGAACACATACAGAAGAATAAAAAAGATTGCACATGTTATTG
GGAAGATTGCAGCCGTGACGAGAAACCCTTTAAAGCGATGTATATGCTGG
TGGTTCACGTGCGGAGACATACTGGAGAAAAGCCACATAAATGCCATtac
GATGGTTGCGATAAAGCATATTCACGACTCGAAAACCTGAAGACACATCT
TCGCTCGCACACTGGTGAGCGGCCGTACTTGTGTGAAGTTCCTGGATGTG
AAAAAGCGTTTTCGAATGCATCGGATCGAGCAAAACATCAGAATCGAACC
CATTCTTCAGTTAAACAATATGGATGTAAAGTGGCAGGATGCACCAAGAG
ATATACAGATCCAAGTTCATTGAGAAAACACATGAAAACAGTCCACGGCG
CTTTGCCCCAACCgaataaaaagGTGAAAGTTGACCACAAAGCGATCAAG
AAAGAAGAACATTCACCCATCAACATCAAAGTCGAAGTACCCGAGGATGA
TCCAAAAAGTCCTAACAAACGTAAAAATACAAGCTCAGAAGAATGCAGTC
CCAGTAAACACTCCCCTGCATATAATGGACACCACGACGCCGGTGGTAAC
GGCCGAAGCCCGATTTACAGTGCCAGCTTGAATGGTTTTAATGGTTATAA
TGATTACGCCATGGGCGGTAGTGGAACTGGTGGTGGTGGATATAACCGGG
GTGGAGCTAATAATGGACACCATCAAACTATAGTGAGTAGTACCACCAAT
TACGATATCGGGCGTAATTGGAGTAACGATCCTGTCGCTAGCTCTAATAA
CGGCGGAAATGGCCCTATCGTGCCGATAGACAATGACCCTCTAAACTTAC
GTGATGATTTCATGCAAATGGGTGTAGATGGCGGTGGCATGATAAACGGG
GTAGGTGTAAACCTTCAAGTTCAGATGCGAATTCCAACGCAACAGAATAT
CGGACAACCTCACCTTGGAAAACCTATTGATTTATACTCAAATGACGTCA
ACAGGCGATTATCAAACGGTTCATTAAAGGGCTTAACACCGCGCCGTGAA
AGTAACGTTAGTACGCTTTCTGCCGATTCCAGCTACTCGTCTGGAACGGA
ATTACCCATGGCGGGAGGACGTCGAGACAGCACCCACAGTACTATTTCTT
ACGTATCTGGAGGCCGACGTTCGGCAACGTTACCAAGTCCCTTACCGTCA
CGTAATCTAAGTCCGGGACGTATCAACCAAACAGTCATTGAAGGTGAAGT
GTTAGACGAGTTCACTTCGCAGCAAACAGGGGCACAGTTACCTATACAAC
AAGATATATCCGCCTCGTACGTAGATACCAACAACGTCAACTACAGCCGA
GGTAGTAGTGGGTATGGTAGCCAACAGACATACTTCGCACCCAAGACACC
ATCCCCTATGTCACCTTCCCCACCTAGTAGGGAGATACGTAGAGCAAGTG
AAGGGACCGTTCGCCGTGTCAGCGATAGTGCTGTCTCAGGGGTTCCCTCC
ATTAAGGAAAAACTACAATACCGTCGAGCGAGCGATCCAGTTAAAGTGCA
ACGTGTCATGGATAATACTCCACGTCGAAcatctttttcaacattctcaG
TTCTCCCAACGTTGTCGAACCAACAACAAAATCAgcagaatcaactcaat
aataataataacaatcaACAACAgcaatttcaacaaaatatgTTTCAACA
AAACATGAactcacaacaacaacaacagcaacaacagcaaatgcaatttc
aaaattcaaccaATTTGATGGTGACACCACAACAAAATCTCAGTGTTGCC
ACAACATCACAAAACAACATGGACTCAGTTGTGTACGCTCAACCAGATTC
TACAAGCAATGTTGGTAACAACATGCTAACAAACACAAACGATCTCTCAA
TGCTGATGGACACTTTTAACATGCAGCAATCGATACCTCAACAAGTGCCA
CAAGATCCACTACAACTCAACATGGAAAACGTCAACCTACAACAGCCACA
GCCACAACAAATGTTCAACAATAACCAACTACCATCTCCCTCAACACTCA
GCATGAACAACACTCCACCACGTCTCTCTCACATGCACATGAACAATCAA
ACATTCAATAACAACTCTAACAACATGCCCACAAATAATGGCGGCGCTTC
AAATTTCGTGGTTCCACACCCGCCAGCGACGCGACGTAACACTGTTCAAC
AAATAAGTCAACCGTGTGCTATCGACACAGACAATAACTACGATTTCACG
TTACAATGGCGTAACGAACATTTCGGGGCACGATCACAGCAAAATAACCA
ACCACAACAAGTCATTGAACCAGATTCGACAGCAATTGACAAGGACTTAG
AATCTTTAATGGTGAACAGTATGGCTTCATTGAACACTCAACAAAATGCT
CGCCCTAAAACCAACATGGCTATTAACCGAATGGACTCTCTAATGAATTC
ATACGCCGAAgagaataaatattttgaatatagcTCTAATGCCGTTGAAC
GGTATCAATAAACTTgttattcatgacgtaatcttttatacgggaTTACC
GGAGAAAGACCGAGATTTGCAACCAAATTTTAATTAAAGTCAAGGTTATT
TCGGGTTTTCCCGTGTTAAAGATTACCTCATGAAAATATCaagaatggaa
atttttttgaaggaattattttttatcattcgcatttattttgaatttgt
ccagttcagtttttttttttttttagagcAATATAATACATATAGatgag
aaattttatttccTATAGTATCCCCtatgatgttttattttttgtattgt
ACAGAACgtatttttaatttgaattctttaattttttttaNTTTTTGTAT
TGTACAGAACgtatttttaatttgaattctttatttttttttaattcgta
CGCGAAATTTATATGCAAAGTTTGAAGTTCAACAATCTTCCAACTGTATC
ATGCATAAATTGCCGAAgctaagaaatttcaaagaaattaatGTTATGTG
ACGACGCCTTTTTAGTAGCAACAAAG
Run BLAST on NCBI

transcript from alignment at sc0000379:322279..335358-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021214 ID=TCONS_00021214|Name=TCONS_00021214|organism=Clytia hemisphaerica|type=transcript|length=13080bp|location=Sequence derived from alignment at sc0000379:322279..335358- (Clytia hemisphaerica)
CATAAAGTTCGGATAGCCGAGTCTACAAGGACTGGTCCTTTGGAGTAATT
CTCACAAAGTTTTTAATTATCGCGTGTGTGGGTTGCTTGGAGTTGTTCTG
CCAAGAATTAAGCCATTATTCGTTTTGACATTATTGTTGTGTATAAATAC
TTTTCAAATTTTGAATGCGTGGGTTTTTTGATATGGCTCCGCTTCAAATT
AATACACCGCCAACAGCCGCCGCAGATAACAAAATATCAGTTCTTTGTCT
ACCGGTGTTTAACGATTTGCGTAATTTTTGGTTACTTCCACCACCGCCCA
CGCATCCGCCCTTGGTTGTGGCGTCACAATTACATCATCATGGCTTTCTT
ACAAATTGTTCTTGCGTACGGCTTGCTTATTTCAGTATTTTATAATTAGC
TTCTTTCAGAGATTTTGAGATATTGGCAATGGTCTGGAATTATTATATTG
TCTAGGGAGCAAATGTCGACGGGGGTGTTTTCCGAGAATGTTATTTATCT
GAATTCCGGGGAAGGTTGTGTAGTTGTACGGAGGGGATAGTAATGTTGTT
TATAACGTATCTATACAGCAAATGTTATTGGCGTGAAAGTTTATCGGTGA
TTTTCTACATACCAGGTCACTCTTAAATCTACCACAAGCCATGCTAGTGT
TTTTTCATTTTCTTTCCATATTTTCTTTCCATAGGCCACACCAAAATCGA
ACACCACAGAACATGGCGGTGCCGATTCAGCAGATGATGAAGAAGAGGGC
GTTGATTTACGTTGTAAGTGGCGGGACTGTGGTGTTCTTTTTGACGCCCA
AAGTAAATTGGTTCAACACGTGAATACGGAACACATACAGAAGAATAAAA
AAGATTGCACATGTTATTGGGAAGATTGCAGCCGTGACGAGAAACCCTTT
AAAGCGATGTATATGCTGGTGGTTCACGTGCGGAGACATACTGGAGAAAA
GCCACATAAATGCCATGTAAGAATGACTACACGTTTTTTTATGAGAACAT
CCAAAATTTTTGAAGCCTTCGGATTTACTTAACTTTTTTGAGTTTTAAGC
CTAAAAATGCTCTTATGTGAGTATTTTTGTCGATATACCTAAGGAAATAG
GTGCTTTAGGGTCCGCAAAGCCTTAAAATGATCTCAACTTGTTTTTAATA
TGTTACTCTTGTATTGCTAACTAGTGGCTGGGAGTTTTAAAAAACTTCTT
TGGAAGTGTGACTGTTCATGAATATAGAATCTACGTTTTTTACCAGTTGC
CGACTAAAAAATGGACGGTGCTATTAGATTCTTGAAGAGTCCCGGCCAAA
GAGCTGGTAGAAGTCAAATAAAAGATTTGCTTATTCTGAGATAGTGAAAT
CGGTTGGGTTGGACTTTCGTTGGCGACTTTCATTTTCAATTTTGCCGTTG
TTTTTCAACGTTCCAAAGACCCTAATTTAAGAAAAAATGCTCGTCAAACA
GTGCTGTGCAGTTGAAATTCAATGTTTTTTTCCGAGGATTCTTGAAAACT
CTGGACAGACATGGATTTGTGATAAATTTTTAGCTTGACCTTGCGAAATT
ATAAAACCTCGTACACAGGGCAAAGCAAGATCGATTACAACCCTGTGTTT
CAACATTGAGTAGAAATTGCTTAGGTATTGTTAATTCTCGTTCGATCTTG
TCTTGACCTTGCTGTGAGATCTTGTGTTGTTTTCACTTTCGTTTTCATAT
GAAATCAATCTCACTGAAACAAGACAAATACAACTTGTTCTTAACAGTTG
AGAAATTATCCCATATTCCTAGATGGTAAAAAACTTTAAAACAACCATAT
CGTCCATAGGACATTAAATGAACGTTGAGACAGCGATATTTTGGGTATTC
GATTTCATAAAAGGGACTGTGATTTAGGGCAAACATTTTCTAAAACATAC
ATTATAAGTATAAAAAACAACATAAAAGTACATTTCTACCTGGGACAAGC
TCCTATCAAAGAGTGTAACAGCTATTTCGCTAAATTAGGTTTGGTCTCCG
GGCTTGTTTAAATATAGACATTTTGGTTGTGGCATCAAAATTCATGTCCC
TTCGAAAGAATAAATGAAGTATCAAATTTTATTTTCAAGGTATTGAGATT
TACCGCCAAGTAATATATGCTGAAATTGACTACTTTTGGGGCATTTTATA
TTTGTTTAACCTCCTTCGACACCCGTCTCATATTCAACTAGATGGTTTCA
AAATCTAAAATAAGAATTAAAACAGTTTTTTTTTCGTCTTTTCACCAATA
ATGTCGACCTATTCCGACTAAAAATAACTTATAACCCACCCTTTGAATCC
CAGGCAATTGTATAGACAGTTTTATCCTAAACTCTACGAAATTCTGAACT
TTACTAGACAACAAAACAATGCCCTTGTGGAATACAACAATACACAGGTT
GCAAAATTAAAGTCTGAAAAAAAAATCGCTTTTACTCGAATTTTTTGTGT
GCTTGTTACATGACATTTATTGACACTAATCAGCTGTAAAGTTATAAAGC
AAGTAACATGGGAATAAAATCACGTGAACTTTTTCAAGTAATCACATGTT
TTGACTGCATTGATATAATTTTGCAACCCGTGTATTGGGAAGTTTTCAAA
CCTTAATCCAAAGGAATAAACACGAGGCTCACGGACGGTTTGAATTTTTT
TTAGAAAATCCCAATTTTTAAATGCCTTCTATTTTATTCAAAGGTTGTTA
TTTGATATATAGTAGTATTTTTTCAATAGTTAGCCCAAAATGAAATTCAA
TATATTGCATGTTAGAACTTGTCCCTGTGAAACCCACCGCAAAGAAAAAA
ATTATTGAAAGGTTTTTTGGCATCAAATCAATATTATGGGCGTTTGACAA
ATTGAAGTGATGAAGTGTGATACCCACAATTTTCGTATGGTTTTGTATTA
ACGGTACACTCTATACCGCAAGTCTTGTGCGTGGATCAAATTTATTTTAT
TTGACCTTAACCCTTCGAGCATCTTCCTAATTCTTTCAATAGGGGAAGAT
ATCGTTTCAGTGATACAACCTTGCAAAATTTCATATCAATTGGATAAATA
TTTCAGAAGTTTTCAAACGTTTTCGTTAGGGTGGAGGGGGGAGGGGGGTC
TCAAGGCCGCCCTTAAAGTCACAAGGGTTAATGTAAACCCGACTTATTAA
AAGTTCTTAGCAACCAACTGCTTTGCTGGAAGATATGCCTATTGCCAAAT
TTCATTCACTACACGGCTATCTCTATTATCTATATTGCAATCTTTTGGCT
TCGTTGTGAAAAAAATATTTAGATCGTGCCTCTCCAGCTTCAGCAATAAT
TAGGTAACATTGAGCCCATTTAGAAACCCTCCCCCTCTCTAAGGAATTTT
AGGATCCTAAACCAAACGTTCGCACATTACAGGCTTCAAATTAAGCCCCA
TCTTTTTATTTGCTTATCATGCATTAAAAAATTCAAATCCATTTTGAAAT
GTTAGTTTAACACTGATCCATTGCCAAACTTTCTTTGATATTAAATGATT
AAATCACACTAACATTGCTTTAAAGGCCATAATTATTAGATAATTAAGCT
CTGTTTTCTTTCTATGCATAGTGGTATGTTAGCTTAAGATTCCTATTGAC
TAAATATTAATATTGGTGCTGAAAGACTTTATATGTTTATATATATTAGA
CTGGTTCTATTGTAAGGAACTTGTAATAGGGTTATACTGAAATACAAAGC
TCTTAGCGGCCAGATTTGCCCATGAATACATATTTTTGCAAAAACCCTAG
GGTGCCTGAAAAAAATAAATATGATATGCGACCCTTAAGATGGTACATGA
ATAGACTTATGCAAAATCTAAATTGCCGCGAAAAATTAATTTCTTTTTAA
ATTTAAAGTAAGAAGTCTCTAGAGTATAATTCCTAAACTATTTGAAAATG
AGCTTAAAAGCACATGTTTAGAAAGGGAGATTTTACCACTGCCGTCGTGT
CACGTCACGTCAAAGCGAATCAAACAAAAAAGCTTTATATACCCTGGACA
AAGTTTCTGAATTCCGGTAAAGCAAAATCTTTGATCGAATCTTTTTTTAA
AGTGGTACCCAAATGGTAGCACTACTGAATAGCGGTGTAAATGAATTGAA
AGCGCTAGATCTCTTTTTTCTGGAATACCTTTGATGATTTACTGCGGCGT
TAAACGTAAATTTTTAACATTGCAATGGATTCTTTGTGAGTACCACATTC
AAAATAAACTTCGATCAAAGATGGTGGATATAGTCAGGGAATTATAAAGG
TCAGTGGATGGAAAGCAGAAAGTTTATCAAAGTCTAATTTCAAAACAATA
AATATACATTCCCAGCGCTGGCACACAACGTTGTTTCAACGTTTTTCTAA
TGTTCATAACGTCCATATAACGTTAGATGAACGTTGCAACAACGTTGTGT
GCCAGCTGGGATTATAGTACCAGATAATTTCCCGCACTGTAAATATCTCA
ACCAGGAAGACGGTTTTGCCACACACGCAAGCGATCAAATGATTATCAAA
AAGGTATTAGCTGCCAGAACTTAATTAAGACCGCAAAATGTTTCCGACAC
AAATATAAAATAGGAAACGCCTAAAAATTTACTGTGAAGGTGGTCCTTTT
CTGCCTCTCATAATGCAAAATAGATGCATCAATTGTGCTCCTGCAATTAT
TATAATGTGTAATTAATAATTATTTTTATAATAACTCCGTGAAAATATTG
CATAACCTTTGCGTCTGTATAAGTCGGCACAGGATGCCTTTTGATTCATG
CTTAATGGAATGGCGTATCGCTCTAAAAGATTCTTTCTGGTAATTCAATT
ACAGTGGACTTTCCCTAATTCGAACTTCTATTATCCGAAGCTTTCTGTAT
TTGAAATAATTTTCAGTTCCTATCTCTTTATAAATTATAATTTGAATCTC
TCTTTAATTCAAACAAATTAGACTTCACGTTTCGAATTACAATGTGCGTC
TAATTGAATTGAAAATTTTGGCTATTTCTTAGACTGGAGTCGTTTATAAT
GCATGTAATACTAATAATAAACACAAATAATGATACGGGATTTAGTTTGT
ATAAACGACTGGAAGAATCCGGTGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAATTCGAACTT
CTATTATCCGAAGCTTTCTGTAGTCGAAATAATTTTCAGTTCCTATCTCT
TTATAAATTATAATTTGAATCTCTCTTTAATTCAAACAAATTAGACTTCA
CATTTCGAATTACAATCTGCGTCGAATTGAATTGAACATTTTGGCTATTT
CTTCGTTTTTCGAAATTTGAAGTTTGGGCGAGAAAGGCGCGTCTGGGCTA
TCTGTTAAGTGTAATCAAATATTTCAATTTTGGAAGGGGTTTATATCCTT
CGAGGCTATATTTTGAGCCTTATTGGACAATTTTTAGTCTAACGTTAAAA
CTCAGAGTTAAAACTCTACCCTTTTAATCTAAGTTATAGCGCTTCCAAAT
CGTTCGTGGCTATAAAATTTCGTGGGAATTTCCCTTTTTACTCAAATATT
GTGGCCTTTATTGTAGCTAGAGCAGTTAACTGTACATAATTTCAAATATA
ATGTTTTTCAAAATATGCATCTTTTTAATTTTTCAGTACGATGGTTGCGA
TAAAGCATATTCACGACTCGAAAACCTGAAGACACATCTTCGCTCGCACA
CTGGTGAGCGGCCGTACTTGTGTGAAGTTCCTGGATGTGAAAAAGCGTTT
TCGAATGCATCGGATCGAGCAAAACATCAGAATCGAACCCATTCTTCAGT
TGTAAGTTTTTATAATTTTTTATTATTGAGCGATGATATCACTCGATTTT
TAATCACGCACATATCCTTCGCTGCAAGCTTTTTTTATAAGAATAGTGTA
AATCCATTTCATCATCATGGATAATCTTAACTTTTTTTAGTCGAAATCAT
ATATTATATTCTTAACATATTCTTAACATATTCTCAAGGTTCATTTTTAG
ATTTTAACAGTCATAGTCTCAAAATCATCGATGGTTTTCAAGTAAGTACT
AAGCTCTAGAAGGGTTTTAGACTACCAGTATAGATAGATATACTAAACAA
CTTCTATTGAAACTTTCTAGAAACAATATGGATGTAAAGTGGCAGGATGC
ACCAAGAGATATACAGATCCAAGTTCATTGAGAAAACACATGAAAACAGT
CCACGGCGCTTTGCCCCAACCGAATAAAAAGGTAAAAATTTTCATTCCAC
GTGTTCTTAATCTTTACCATAGTTCACAGGTAGATTGGGTTCGAGTTGAC
CGAGGTAGGTTGACGTCAGGTCAAAATTCTGTGTTCATGATATTCATGAC
GTAATGTTTCTACTGAAACGCCTCGGTTTTTACCAGTAGTTGCAAATTTA
AGCTAGAAAAAAATTGTTTAAAAATTACCACAACAGGCGAAAACCGGGGT
GTTTCCGTAAAAAAATGCACGATGAATTTCATGAACCACCGGTGAGCACG
GGAATGCAACTCACTTTTGTTTTGTACATTCGTCTCTGGCTCTAATCCTT
AGTTTAGTAGTTCACAACTAAGTTGTTGCGACAGTAAATTTTGTAATTCC
AGAAATTTAATGTAAGTCATATCTATGGTATAAAATTCATGATGTGCACC
ATTGCAATTTCTTCCACGGACCCAACAGCTGATTGGTTGCAAGTGACGTA
TTGACTGGTTTTACGTCACTAACGACCAATCAGCTGTTGGATCCATGATG
TAATGTCAGAAGACATTACACCGGTGCATATCATGAATAAAGCCTAATGT
TCAATCGGAAGGAACTGGAGGCAGGTACTCAAATCAAGCGGTCGATCGTA
GGTATGGCTCTAATTTTGGACGGCACATACCGTCAAGAAGAAGGGATTCG
AATCGAGAACCCCTTGTTTGTGACACCCCTTTTTCCTGACTGATGGTTAA
ACTTTATACACTTAATTGATCTTCGCTCGTGTACGTGCTTACACACATAC
TCTTTTCGAGTTTTTGGAATTGAAAGTATGATGACGTGCTTTTGGATTGT
TTGTTTGTGTTTTGCATAATTTGTTTTGGTTATTATAAGAACATCCAGAA
TTTTTGAAGCCTTGGGATATTCTTAACTTTTTGAGTTTTAAGCCTAAAAA
TGTTGTTAACATGTTCTTATTTTCGCCATTTTTTGGGTATATTTGTCCAT
TTCCCTAGGAAATTCGGTGTTTTAGAGTCAACAAAGCCTTAAAATGTTCT
TAACTTGTTCTTAACATTTTGGCCATCGAAGCCTTATGTTCTTATATAGT
TTGTTCTTATAAAAAACGTGTAATTTGTTTTGGTTATTACTCTTAATGAC
GGATTATCTTCATGAGCGGGTTTTCTATATTTCAAGACGCATGATTTACT
GCATTGATGAAGCGATTTCTACATCCAAAGGTCTTCACTCTATCTGGAAT
GTTGGCATGTTGCCATTTTTCTGATGAATAATGCCGTTTATTATAATTTG
ATTCTTCGATGCATTGATTTTTTTGCCTTGCACGTGCCTTTTTACCATTT
CTCCCGTTAAATTTTTAACTTTTGGATGGAATTTGAATAATGTGTCTAGC
AAGGAAGTTGAAAGGGAGGAGGAAAGATTAGTCTGGGGAATTGTGAAATT
GAAAATTGCGTATTAGTTTTTTTTTCGACCATCAGTTATTTGAATATAAA
TTATCCAAAATTATCTTTCCAACGAGATTACCATACTCTAATTCTAGCTT
CAGGACACTTGATTTGCTAAGAATTCGCCGTCTTAGAATCCAGTATTCCA
AAGAGTCTATCAGTCAAACGTTGCAAACATAAAGCAAAATCCCTTTACGA
ACCAAAAATTCGTTTTTTTTAAACTACAGTCAACTGCCACTAATTCGAAA
CACTATAATTCGAATCTTTCTATAATTCGAACTAAAACAGCTGTCCTCTC
AGCTGAAAAATCGATAAAATACTCTCCGTAATTAGAATCTTCCCAGCTGG
CACACAACATTGGTTCAACATTCATATAACGTTATATGGACGTTGTAAAC
ATTAGATTAACGTTGAAACAACGTTGTGTGCCAGCTTGGTTGCTATAATT
CGAAAAACATTATTGGTTCCCTGAGAGAGTCAACTGTGTATTATGTTTAC
TGCGAATACATTACTANGTTCCCTGAATATCGAATTATGGAGGTCAACTG
TGTATTATGTTTACTGTGAATACATTACTAATAAGATTTTGTTGAGAGTT
TCGCAGAGATTTTCTCTCCAGTATTTGTGGAGGAAGGGTAACCAATCAAA
GCATTAATTGGCAAAATTAAAAAGGCCCATAATCGTATTTTAATGTACTA
TTTATTTTCACGAAGCCAAGCGGTGATATAAATAAAAATCCGCCAACTCA
CTTTTAAGACCCGCCTTCTATGACAGTAAATGTTACTTTTTTAACAACAC
CCCATACACGTTTTTTATAAGAACATCCAAAACTTTGGAAGCCTTCGGAT
GTTCTTAACTTTTTGAAATTTAAGCCTAAAAATGTTCTTAACATGTTCTT
ATTTTTCACCATTTTGTGAGTATTTTTGTGAGTATTTTTGTCCATTTTCT
AAAGAAATTGGCCGTTTTAGAGTCAACAAAGCCTTAAATTGTTTTTAACA
TTTTGGCCATCAAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAA
AGTGTATACGAGGAAATCAGAACAAATCGAAGTAAATAAATACATCAAAT
CTCCAAAACAAGATAGTTTAAACTTTTTTTTATAAGAACAAACTATATAA
GAACATAGACTTTGATGGCCAAAATGTTAAGAACAAGTTAAGGCTCTGTT
GACTCTAAAACACTGAATTTCTTAGGAAAATGGACAAGAATACTCAAAAA
TGGCGAAAATAAGAACATGTTAAGAACATTTTTAGGCTTAAAACCCAAAA
AGTTAAGAACATCCGAAGGCTTCAAAAATTGTGGAAGATGTTCTTATTAA
AAAAGTGTATACCAGGAAATCAGAACAAATCGAAGTAAATAAATACATCA
CATCTCCAAAACAAGATAGTTAAAGTGTGTATTGCTTTATTTCCGTATAT
GATCTATTAAGTAGCTTCTAGTTGCTAGGTAACCAAACTAATGATTAAAT
ACATGATGGTAGCATATAAACATGATCTAAGGCATGTTTTGTTTTCCATT
TGGAGATTTACACTTGGCTTCTTTTATAGCATATTGTGGGTTGGCTCTTT
ATTTTGAATATGGATATAAAACTATGATTAAGCGTTATTGGTAGAAAGGC
TCTTAAAATGATGTGACGCATTTCTTTGAGTACTGTAGAAATTATTGATA
ACTGTACTTGCTTTTGATGAAATTATCGTTGGTAATTTGGTTTTACACAA
ATAAAACTTTTGTATGCTGTCGCGGGCTGTCGCCAGACTTGGATATCTAG
AACTTTTAAAGAACCATCGACCCGACCAGCGAAAAATAAAACTTACAAAA
TTTGCATATCTTGAAAAAGATTTTTGCTTGGAGATTGCTTTGATTTGATG
AAGGAGATTGTTATTATCGCAATTTTAACCAAAGCTATCTTGCAACGCCG
AATCATGATGCTTGAAAAACTTAAAAGAAGGTCTAAAAGAAGATGCATTT
TCTCATCAGTTCTCTTAGACTGCGATGTTTCATCTAAAAAGGTCAGAGTG
CGTGAGATGCTTTATAACTTCCTTCCCATCAATAAATGATATGGACCTTT
TACACTTACTGGTAAAGAATCTGTGAGGCTCGATTTAGTTTCAAGACTTA
CTTACATTGATTGGTTGATAAGAAAACTGTAAAACAGGGAAATCTATATA
AAAATATGAAAAATATCTCTCATTTTATTGCCTCTTATGTCCAATGTAAA
AACGACTTTTGAAAATCGTAAGGAAAAAAGACTTATAATTTATTCACTCA
GAAATTTATAAGGAATCTGTGTGCAAAATACCATCCCATTATCCCAGCTG
CCTAACTGAAAGGTTAAAGAGTTTAGAAAATTTGAGGGATTTGTACAAAC
TTGCCCCAAAAAATTATAGGTGTTCTATCGAAAATGCACCAACAAAAGTG
CTGAACTTTTAAATTTTCATAGACTTTGATTGCGATTCAGTTTGTAAAGA
AACAAACTCCTTTTTTTACCAATTCAGGTGAAAGTTGACCACAAAGCGAT
CAAGAAAGAAGAACATTCACCCATCAACATCAAAGTCGAAGTACCCGAGG
ATGATCCAAAAAGTCCTAACAAACGTAAAAATACAAGCTCAGAAGAATGC
AGTCCCAGTAAACACTCCCCTGCATATAATGGACACCACGACGCCGGTGG
TAACGGCCGAAGCCCGATTTACAGTGCCAGCTTGAATGGTTTTAATGGTT
ATAATGATTACGCCATGGGCGGTAGTGGAACTGGTGGTGGTGGATATAAC
CGGGGTGGAGCTAATAATGGACACCATCAAACTATAGTGAGTAGTACCAC
CAATTACGATATCGGGCGTAATTGGAGTAACGATCCTGTCGCTAGCTCTA
ATAACGGCGGAAATGGCCCTATCGTGCCGATAGACAATGACCCTCTAAAC
TTACGTGATGATTTCATGCAAATGGGTGTAGATGGCGGTGGCATGATAAA
CGGGGTAGGTGTAAACCTTCAAGTTCAGATGCGAATTCCAACGCAACAGA
ATATCGGACAACCTCACCTTGGAAAACCTATTGATTTATACTCAAATGAC
GTCAACAGGCGATTATCAAACGGTTCATTAAAGGGCTTAACACCGCGCCG
TGAAAGTAACGTTAGTACGCTTTCTGCCGATTCCAGCTACTCGTCTGGAA
CGGAATTACCCATGGCGGGAGGACGTCGAGACAGCACCCACAGTACTATT
TCTTACGTATCTGGAGGCCGACGTTCGGCAACGTTACCAAGTCCCTTACC
GTCACGTAATCTAAGTCCGGGACGTATCAACCAAACAGTCATTGAAGGTG
AAGTGTTAGACGAGTTCACTTCGCAGCAAACAGGGGCACAGTTACCTATA
CAACAAGATATATCCGCCTCGTACGTAGATACCAACAACGTCAACTACAG
CCGAGGTAGTAGTGGGTATGGTAGCCAACAGACATACTTCGCACCCAAGA
CACCATCCCCTATGTCACCTTCCCCACCTAGTAGGGAGATACGTAGAGCA
AGTGAAGGGACCGTTCGCCGTGTCAGCGATAGTGCTGTCTCAGGGGTTCC
CTCCATTAAGGAAAAACTACAATACCGTCGAGCGAGCGATCCAGTTAAAG
TGCAACGTGTCATGGATAATACTCCACGTCGAACATCTTTTTCAACATTC
TCAGTTCTCCCAACGTTGTCGAACCAACAACAAAATCAGCAGAATCAACT
CAATAATAATAATAACAATCAACAACAGCAATTTCAACAAAATATGTTTC
AACAAAACATGAACTCACAACAACAACAACAGCAACAACAGCAAATGCAA
TTTCAAAATTCAACCAATTTGATGGTGACACCACAACAAAATCTCAGTGT
TGCCACAACATCACAAAACAACATGGACTCAGTTGTGTACGCTCAACCAG
ATTCTACAAGCAATGTTGGTAACAACATGCTAACAAACACAAACGATCTC
TCAATGCTGATGGACACTTTTAACATGCAGCAATCGATACCTCAACAAGT
GCCACAAGATCCACTACAACTCAACATGGAAAACGTCAACCTACAACAGC
CACAGCCACAACAAATGTTCAACAATAACCAACTACCATCTCCCTCAACA
CTCAGCATGAACAACACTCCACCACGTCTCTCTCACATGCACATGAACAA
TCAAACATTCAATAACAACTCTAACAACATGCCCACAAATAATGGCGGCG
CTTCAAATTTCGTGGTTCCACACCCGCCAGCGACGCGACGTAACACTGTT
CAACAAATAAGTCAACCGTGTGCTATCGACACAGACAATAACTACGATTT
CACGTTACAATGGCGTAACGAACATTTCGGGGCACGATCACAGCAAAATA
ACCAACCACAACAAGTCATTGAACCAGATTCGACAGCAATTGACAAGGAC
TTAGAATCTTTAATGGTGAACAGTATGGCTTCATTGAACACTCAACAAAA
TGCTCGCCCTAAAACCAACATGGCTATTAACCGAATGGACTCTCTAATGA
ATTCATACGCCGAAGAGAATAAATATTTTGAATATAGCTCTAATGCCGTT
GAACGGTATCAATAAACTTGTTATTCATGACGTAATCTTTTATACGGGAT
TACCGGAGAAAGACCGAGATTTGCAACCAAATTTTAATTAAAGTCAAGGT
TATTTCGGGTTTTCCCGTGTTAAAGATTACCTCATGAAAATATCAAGAAT
GGAAATTTTTTTGAAGGAATTATTTTTTATCATTCGCATTTATTTTGAAT
TTGTCCAGTTCAGTTTTTTTTTTTTTTTAGAGCAATATAATACATATAGA
TGAGAAATTTTATTTCCTATAGTATCCCCTATGATGTTTTATTTTTTGTA
TTGTACAGAACGTATTTTTAATTTGAATTCTTTAATTTTTTTTANTTTTT
GTATTGTACAGAACGTATTTTTAATTTGAATTCTTTATTTTTTTTTAATT
CGTACGCGAAATTTATATGCAAAGTTTGAAGTTCAACAATCTTCCAACTG
TATCATGCATAAATTGCCGAAGCTAAGAAATTTCAAAGAAATTAATGTTA
TGTGACGACGCCTTTTTAGTAGCAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011872XLOC_011872Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021214-exon-sc0000379-1575043694:334994..335358TCONS_00021214-exon-sc0000379-1575043694:334994..335358Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1575043694:334393..334674TCONS_00021214-exon-sc0000379-1575043694:334393..334674Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1575043694:329258..329422TCONS_00021214-exon-sc0000379-1575043694:329258..329422Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1575043694:328828..328938TCONS_00021214-exon-sc0000379-1575043694:328828..328938Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1575043694:322279..324881TCONS_00021214-exon-sc0000379-1575043694:322279..324881Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1510915933:334994..335358TCONS_00021214-exon-sc0000379-1510915933:334994..335358Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1510915933:334393..334674TCONS_00021214-exon-sc0000379-1510915933:334393..334674Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1510915933:329258..329422TCONS_00021214-exon-sc0000379-1510915933:329258..329422Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1510915933:328828..328938TCONS_00021214-exon-sc0000379-1510915933:328828..328938Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1510915933:322279..324881TCONS_00021214-exon-sc0000379-1510915933:322279..324881Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1491911889:334994..335358TCONS_00021214-exon-sc0000379-1491911889:334994..335358Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1491911889:334393..334674TCONS_00021214-exon-sc0000379-1491911889:334393..334674Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1491911889:329258..329422TCONS_00021214-exon-sc0000379-1491911889:329258..329422Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1491911889:328828..328938TCONS_00021214-exon-sc0000379-1491911889:328828..328938Clytia hemisphaericaexon
TCONS_00021214-exon-sc0000379-1491911889:322279..324881TCONS_00021214-exon-sc0000379-1491911889:322279..324881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:322279..335358 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.115566	0.069682	0.0692849	0	0	0	0.119855	0	0	0	1.10947e-09	0.371686	0.331635	0	0	0.377054	0.744118	2.69958	1.02398	0.756035	1.14423	0.323416	0.394644	0.196866	0.4779	0.0894233	0	0.266161	0.102821
Blast
[Close]
BLAST of TCONS_00021214 vs. Swiss-Prot (Human)
Match: GLI2 (Zinc finger protein GLI2 OS=Homo sapiens GN=GLI2 PE=1 SV=4)

HSP 1 Score: 254.603 bits (649), Expect = 4.974e-69
Identity = 123/202 (60.89%), Postives = 144/202 (71.29%), Query Frame = 3 
Query:  315 VVASQLHHHGFLTNCSCATPKS-----NTTEHGGADSADDEEEGV--DLRCKWRDCGVLFDAQSKLVQHVNTEHIQKNKKDCTCYWEDCSRDEKPFKAMYMLVVHVRRHTGEKPHKCHYDGCDKAYSRLENLKTHLRSHTGERPYLCEVPGCEKAFSNASDRAKHQNRTHSSVKQYGCKVAGCTKRYTDPSSLRKHMKTVHG 899
            +   Q+  HG   +C CA P S     +  E    D    E E V  +  C W DC   +D Q +LV H+N EHI   KK+  C W+ C+R++KPFKA YMLVVH+RRHTGEKPHKC ++GC KAYSRLENLKTHLRSHTGE+PY+CE  GC KAFSNASDRAKHQNRTHS+ K Y CK+ GCTKRYTDPSSLRKH+KTVHG
Sbjct:  392 LTQGQVSGHG---SCGCALPLSQEQLADLKEDLDRDDCKQEAEVVIYETNCHWEDCTKEYDTQEQLVHHINNEHIHGEKKEFVCRWQACTREQKPFKAQYMLVVHMRRHTGEKPHKCTFEGCSKAYSRLENLKTHLRSHTGEKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEKPYICKIPGCTKRYTDPSSLRKHVKTVHG 590
The following BLAST results are available for this feature:
BLAST of TCONS_00021214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLI24.974e-6960.89Zinc finger protein GLI2 OS=Homo sapiens GN=GLI2 P... [more]
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