TCONS_00021021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021021
Unique NameTCONS_00021021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021021 ID=TCONS_00021021|Name=TCONS_00021021|organism=Clytia hemisphaerica|type=transcript|length=682bp
CATTCGATCATAAGCTCCACTATGCTTATAGAAAGCAAGAGCCGTTACTT
GTTCTCTTTACGGAGAGTATTTTCTCCTATTAggcaaaaataacaaaaga
agcACTCTCAGATATTAAAACTTAGAGTATCCTCTGGAACCGCCGTTATC
TTTGACTCGAGTATCTAAAATATTGAACACGTTTTCTTGTTCACCATCCA
ATAAACATCGCGTTATAAGACTCTATATTTGGTGATATTTCGTACAAATT
TTGGTTTCATGGATTTTCTATTACCAAGAGACGTTATCATCCACTACAAG
ACCACCAGTGTAAAAGCTAATTCTCTGATAGCAAGTTCCACAGCAACATC
AAAATTATCACTCAATAAAATAACTAACGCCAAGGACGCCATAATTGTTA
TAACCAATAAGAGTATAGGGATCAGTATTGAAATTCCGATGAACAGGAGG
ATGGGTAGGGTAGACAGTAATGCCAAATCCATAATCTGACTTATTAGGTA
AACGAAACATTTGCCATTCGTTTCAGTTTCTTCAGGTAGTATCTCTTCAG
CATATCTTTATCCTACCAAGTTTCTATCTTCTTTTggttctaaaagaaaa
aaattattgaaagaaaaTCTATACCTTGCGTCGACATTTGTTTTTGTTAT
CATATTCACAACTTCGTTCCCTAGCGTATTAT
Run BLAST on NCBI

transcript from alignment at sc0000376:189439..190120

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021021 ID=TCONS_00021021|Name=TCONS_00021021|organism=Clytia hemisphaerica|type=transcript|length=682bp|location=Sequence derived from alignment at sc0000376:189439..190120 (Clytia hemisphaerica)
ATAATACGCTAGGGAACGAAGTTGTGAATATGATAACAAAAACAAATGTC
GACGCAAGGTATAGAttttctttcaataatttttttcttttagaaccAAA
AGAAGATAGAAACTTGGTAGGATAAAGATATGCTGAAGAGATACTACCTG
AAGAAACTGAAACGAATGGCAAATGTTTCGTTTACCTAATAAGTCAGATT
ATGGATTTGGCATTACTGTCTACCCTACCCATCCTCCTGTTCATCGGAAT
TTCAATACTGATCCCTATACTCTTATTGGTTATAACAATTATGGCGTCCT
TGGCGTTAGTTATTTTATTGAGTGATAATTTTGATGTTGCTGTGGAACTT
GCTATCAGAGAATTAGCTTTTACACTGGTGGTCTTGTAGTGGATGATAAC
GTCTCTTGGTAATAGAAAATCCATGAAACCAAAATTTGTACGAAATATCA
CCAAATATAGAGTCTTATAACGCGATGTTTATTGGATGGTGAACAAGAAA
ACGTGTTCAATATTTTAGATACTCGAGTCAAAGATAACGGCGGTTCCAGA
GGATACTCTAAGTTTTAATATCTGAGAGTgcttcttttgttatttttgcc
TAATAGGAGAAAATACTCTCCGTAAAGAGAACAAGTAACGGCTCTTGCTT
TCTATAAGCATAGTGGAGCTTATGATCGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011792XLOC_011792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021021-exon-sc0000376-1491911889:189439..190120TCONS_00021021-exon-sc0000376-1491911889:189439..190120Clytia hemisphaericaexon
TCONS_00021021-exon-sc0000376-1510915933:189439..190120TCONS_00021021-exon-sc0000376-1510915933:189439..190120Clytia hemisphaericaexon
TCONS_00021021-exon-sc0000376-1575043694:189439..190120TCONS_00021021-exon-sc0000376-1575043694:189439..190120Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:189439..190120 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225017	0.219427	1.10403	2.24333	1.41609	0.639438	1.06075	0.54167	0.0632059	0.391454	0.379955	0.199814	3.09281	2.0204	0.170363	0.0914128	0.506759	0.634837	3.82718	2.33617	0.362599	0.636708	1.29	1.01643	0.805304	1.07807	0.102848	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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