TCONS_00021020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021020
Unique NameTCONS_00021020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021020 ID=TCONS_00021020|Name=TCONS_00021020|organism=Clytia hemisphaerica|type=transcript|length=634bp
tagTGTTTCACTTAAAAAATGATAATGGAGCAGATCCTTTCCCTGATACC
AACCAAGTAAGGTTTATAtcgaaatcaaaatatttaggtaaaaaTCATAA
ACGTTCTGCTATGGTTGGAGAGTAACCTTTTTCAGGTTaatgttttctat
ttttgaGGTTTAGTTTGTTGAAGTTTTAATTCATCTCTTTCTTCAATCAT
TGCAAATATTACTGTACCCAGTGGATCAGGACTTGATTCTTTTTTGTTAC
TCTGAAGTGTCTAATAAACGGGAGGGGGAgttggaaaaatcttaaaaatc
taTTAAACGAGGGGAGGGGTGGTTgggaaaatcttaaaattttaatataa
ttaaCAGGTGAACCTTATTATAGACTAAAACCAGcctatttagagcaaat
acgGGACTCTTCAGAATATTTTAACGGGGCCATAAGAGCCAGGGtgataa
aaatcaaataattaaCAAACTTTATTAGATACTGAGAGTATAACTGTTGG
CGAAAAAATACCACATCTCACTACATTGTGAAGCGACACAATTATAAATA
TTATGAATAAACGTTTGTCTTTTCAGCTACGTAACATAACATCCTTTGTC
TTTTTAAGTTAAGtaaaaaagaacaacatttgTT
Run BLAST on NCBI

transcript from alignment at sc0000376:110728..111361

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021020 ID=TCONS_00021020|Name=TCONS_00021020|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0000376:110728..111361 (Clytia hemisphaerica)
AAcaaatgttgttcttttttaCTTAACTTAAAAAGACAAAGGATGTTATG
TTACGTAGCTGAAAAGACAAACGTTTATTCATAATATTTATAATTGTGTC
GCTTCACAATGTAGTGAGATGTGGTATTTTTTCGCCAACAGTTATACTCT
CAGTATCTAATAAAGTTTGttaattatttgatttttatcaCCCTGGCTCT
TATGGCCCCGTTAAAATATTCTGAAGAGTCCcgtatttgctctaaatagg
CTGGTTTTAGTCTATAATAAGGTTCACCTGttaattatattaaaatttta
agattttcccAACCACCCCTCCCCTCGTTTAAtagatttttaagattttt
ccaacTCCCCCTCCCGTTTATTAGACACTTCAGAGTAACAAAAAAGAATC
AAGTCCTGATCCACTGGGTACAGTAATATTTGCAATGATTGAAGAAAGAG
ATGAATTAAAACTTCAACAAACTAAACCtcaaaaatagaaaacattAACC
TGAAAAAGGTTACTCTCCAACCATAGCAGAACGTTTATGAtttttaccta
aatattttgatttcgaTATAAACCTTACTTGGTTGGTATCAGGGAAAGGA
TCTGCTCCATTATCATTTTTTAAGTGAAACActa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011791XLOC_011791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021020-exon-sc0000376-1491911889:110728..111361TCONS_00021020-exon-sc0000376-1491911889:110728..111361Clytia hemisphaericaexon
TCONS_00021020-exon-sc0000376-1510915933:110728..111361TCONS_00021020-exon-sc0000376-1510915933:110728..111361Clytia hemisphaericaexon
TCONS_00021020-exon-sc0000376-1575043694:110728..111361TCONS_00021020-exon-sc0000376-1575043694:110728..111361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:110728..111361 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.751293	0.407016	2.93003	3.42139	0.562867	0.266871	0	0.100474	0	0.174266	0.169147	0.11119	0	0	0	0	0.0626659	0	0	0	0	0.118103	0.191426	0	0	0.0799887	0	0.366476	0.092653	0.0943988
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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