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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020995 ID=TCONS_00020995|Name=TCONS_00020995|organism=Clytia hemisphaerica|type=transcript|length=3430bpRun BLAST on NCBI protein sequence of TCONS_00020995-protein >TCONS_00020995-protein ID=TCONS_00020995-protein|Name=TCONS_00020995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp YRLKNELKSLKKKGMGYLRGAENDLSNFSKFVQKADTILKKLRVSSSKLSRun BLAST on NCBI transcript from alignment at sc0000376:45098..52098- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020995 ID=TCONS_00020995|Name=TCONS_00020995|organism=Clytia hemisphaerica|type=transcript|length=7001bp|location=Sequence derived from alignment at sc0000376:45098..52098- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000376:45098..52098- >TCONS_00020995 ID=TCONS_00020995|Name=TCONS_00020995|organism=Clytia hemisphaerica|type=CDS|length=13527bp|location=Sequence derived from alignment at sc0000376:45098..52098- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020995 vs. Swiss-Prot (Human)
Match: HECD3 (E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1) HSP 1 Score: 365.54 bits (937), Expect = 2.679e-109 Identity = 192/430 (44.65%), Postives = 263/430 (61.16%), Query Frame = 1
Query: 244 ILQHCRFLLPLSKKRQNFVKEMLRSTERAAPSVKPIIRVDRRVPVNERYKHGQ----PSTVFMQIFSSLKNKDF----LHYRWNKKSYSQWWEVKFYGEGIIDQGGGFRDSLTEMSEELCPPLLDQEHCLPFLVRTPNHVTRVGEHMDCFTLNPSCRNFEAYKWLGQLFGACFRTGETLPLSLPPMLWKMLVGEHVSWKDDFIHIDDAAVRNTDGLANLEADAYK-ALNVEQTYSTMLSNQKEIELLPGGFDMVVQCEDRTKYSEMVRKARMMESIEQLKTLRGGLLTVLPEPVLSCLTWSRLERGVCGNPNISVADLKANCRYGDGLSSSSPSVNHMWAALSTFTDEERSRFLRFITGRKRLPSPFIVFRASSEGGTLSQSLNSILPSASTCGSNLFLPEYTTAEIATEKLRYAIYNCIAIDTDTSP*E 1506
I Q +FLL LS++R V + LR +E + PS P + ++RR+ + R + + VF Q++ LK D L YRW + Y QWWE KF EGIIDQGGGFRDSL +MSEELCP D LPF VRT N GE D + NPSCR+F Y+W+GQL GA R E L L+LP +WK L GE VSW DF +D V+ + + ++ + ++ E T++T+LS+Q+ +EL+PGG +VV DR+++ ++V+KAR+ ES EQ+ ++ GLL V+P+ VL LTW LE+ VCG+P ++V L+ R+ D S V + W AL+ FT+E+RSRFLRF+TGR RLP+ ++ L LP +STC S LFLP Y +A++ EKLRYA YNC+AIDTD SP E
Sbjct: 439 IKQVKQFLL-LSRQRPGLVAQCLRDSESSKPSFMPRLYINRRLAMEHRACPSRDPACKNAVFTQVYEGLKPSDKYEKPLDYRWPMR-YDQWWECKFIAEGIIDQGGGFRDSLADMSEELCPSSADTPVPLPFFVRTANQGNGTGEARDMYVPNPSCRDFAKYEWIGQLMGAALRGKEFLVLALPGFVWKQLSGEEVSWSKDFPAVDSVLVKLLEVMEGMDKETFEFKFGKELTFTTVLSDQQVVELIPGGAGIVVGYGDRSRFIQLVQKARLEESKEQVAAMQAGLLKVVPQAVLDLLTWQELEKKVCGDPEVTVDALRKLTRFED-FEPSDSRVQYFWEALNNFTNEDRSRFLRFVTGRSRLPARIYIY-----PDKLGYETTDALPESSTCSSTLFLPHYASAKVCEEKLRYAAYNCVAIDTDMSPWE 860 The following BLAST results are available for this feature:
BLAST of TCONS_00020995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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