TCONS_00020851 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020851
Unique NameTCONS_00020851
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020851 ID=TCONS_00020851|Name=TCONS_00020851|organism=Clytia hemisphaerica|type=transcript|length=1407bp
AGGTGCTTGGGATATGTGGTGGCTTCCACCAAAAGAAGCtccaaaaaatc
tcaaattcatGATCTCAACATTAAACCAAGAAAATGGGACATTTCAGAAC
GCTTGTCATGTTTCACCAGATGCACAACGACTTCCCATCGAAAACATGAG
CCATGAAGATTTGCAAGAAATGGTCCGAGCAACACTTGAAAGGTTTAATA
AGAAGCTTACCGAAAATGAGGATCCGATTCTGGGAAATCAAATGGAGAAA
TTGTTGTCCAAAAGTCAAAGTCCATTGTACTTAATCGCTGCATGTGAGGC
GTTGAGAAagtttggaattttcgaaaaagtgaCCCAGTATATTGAGAGTC
TACCAAACACCATTACAGACCTGTTTAGCTTCCTTTTAGACGAATGGTCT
GAAAAGTATGGTAAACTATTTGTTGAGGACGTAGCAGGATTATTGTGTGC
TTCAAAAGATGGCTTACTGGAAAACCAAATCAACGACCTTCTGCATTTTA
AAGAACAAAGAGAAAAAGGCGATGGGGAGTTTCTGTACGATGCAAATTTT
CCAAGAATCTACGATTCGATTGCTCATTTTTTAGCTGCTGGTGGTGGTGG
CTATCTTCGATTCTTCCACGACCAGCTCAAATATGCCGTGCGCCGAAAAT
TTATGACAGAATCATTCGAACAAGAAACACACGCGTGGATGAgagatttt
tttgaagacattATCACCAAGCAATGCTGTGAAACACCTCAAGAGGAACC
ACCAGCATATTTCGAACATGCCCTAGAACAACTGGTCTACCATCAACTCA
AAGCTCGCCAGAATCAAGATTCACCTCTTGAAAGCTTGAAAATGAGTTTG
AGGAATATTTACTTTGTTAAAGAACGCATTGTTGCCAAGCAACATCAAAG
CCTTAGTGACGAATACACTCTCGCCTTGGACACACTCACAAATGCAGATG
ACATAGATGCTCTCAAGCAATGGGCCTCGTTTGTTCAGCTCTATACACCG
TACATTCGGGAATTCCCGAATTTCTGCCTCAACATGGCTGTATCACAAGC
CCCAGTCTCAAATGTTACCAAAGATACCTTGGCTTTAGGGACGGAGCCCT
CAGTCAAAGGGGAAGCGTACCCGTTATATTGGGCCAATATACCTGAGGAA
TGTGACCCAATGTTGGTTAAATATGATCATGGTGGAAGGGACATTGCTGC
TTCAGATACACAAGGAGATATAGTGGCTATTGCAGCTGGAAGTAAGGTTA
AAATCCTGGATCAAAGTAGCGGTGAATTAATTCACATATTGAATGTCCCT
GGCATGGCTGTTTGGGTTTCAGTTGATGGTAAAAGCTTACTCGTGGGTGA
TATGAAGGGGAAATTATCGTGGTGGGATGTTTCCACAGCCACTATGGAAG
ATTCAAT
Run BLAST on NCBI

transcript from alignment at sc0000371:121025..127028-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020851 ID=TCONS_00020851|Name=TCONS_00020851|organism=Clytia hemisphaerica|type=transcript|length=6004bp|location=Sequence derived from alignment at sc0000371:121025..127028- (Clytia hemisphaerica)
AGGTGCTTGGGATATGTGGTGGCTTCCACCAAAAGAAGCTCCAAAAAATC
TCAAATTCATGATCTCAACATTAAACCAAGAAAATGGGACATTTCAGAAC
GCTTGTCATGTTTCACCAGATGCACAACGACTTCCCATCGAAAACATGAG
CCATGAAGATTTGCAAGAAATGGTCCGAGCAACACTTGAAAGGTTTAATA
AGAAGCTTACCGAAAATGAGGATCCGATTCTGGGAAATCAAATGGAGAAA
TTGTTGTCCAAAAGTCAAAGTCCATTGTACTTAATCGCTGCATGTGAGGC
GTTGAGAAAGTTTGGAATTTTCGAAAAAGTGACCCAGTATATTGAGAGTC
TACCAAACACCATTACAGACCTGTTTAGCTTCCTTTTAGACGAATGGTCT
GAAAAGTATGGTAAACTATTTGTTGAGGACGTAGCAGGATTATTGTGTGC
TTCAAAAGATGGCTTACTGGAAAACCAAATCAACGACCTTCTGCATTTTA
AAGAACAAAGAGAAAAAGGCGATGGGGAGTTTCTGTACGATGCAAATTTT
CCAAGAATCTACGATTCGATTGCTCATTTTTTAGCTGCTGGTGAGGTTTT
CTAGATATTTTCCCGTAATTATTTTTTAACAACATAATGGTAACAGCATT
AAGAGTTGCGCAATCTAAGATAAACATTGTTGAAATATAGCACTTTCATA
CTCCCTAGCTAATACCTAATACCTAGTGAGTTAGAGTTCTTCACTTTAGA
AAACCTCGTACATGAACTGATCTAGTTGACACACAAATAGATGACTCTAA
TTAATGGCATACTGTTTTTAGGTGGTGGTGGCTATCTTCGATTCTTCCAC
GTCCAGCTCAAATATACCGTGCGCCGAAAATTTATGACGGAATTATTCGA
ACAAGAAACACACGTGTGGATGAGAGACTTTTTCGAAGATATTGTCTCTA
AGCAATGCCGTGAAACACCTCAAGAGGAACCACCAGCATATTTCGAGCAC
GCCCTAGAACAACTGGTCTACCATCAACTCAAAGCTCATCAAAATCAAGA
TTTGCCTTTGGAAAGCTTGAAAATGAGTTTAAGGAATATCTACTTTGTTA
AAGAACGCATTGTTGCCAAGCAGCATCAAAGCCTTAGTGACGAATACGCA
CTTGCCTTGGAAACACTCACAAATACTGACGATATAGATGCTCTCAAGCA
ATGGGCCTCGTTTGTTCAGCTCTACACATCCTATATTCGGGAATTCCCGA
ATTTCTGTCTTAACATGGCTGTAACACAAGCCCCAACCTCATACGTCACC
AAAGATACCTTGGCTCTAGGGATGGAGCCCTCAGTTAAGGGGGAAGCGTA
CCCTTTATATTGGTCCAACATACCTGAGGAATGTGACCGGATGCTTGCTA
AATACGCTCTAGGGGGTATTGACTGTGCTGTTACGAGCTCAAAAGGTGGT
TTAGTAGCCATTATGGCGTGGGAAAGAGTTTGTGTATTTGACCAAAAAAG
TGGAGAGTTAGTCCACCAGGTAAATGGACGAGCGTCAGTTGTTCTTCTTA
CAGCTGACAGCAAGACTTTACTTATTGGTGATGACAGAGGAACGGTATCA
AAATATGATGTTTCTACAGGTAGTCTGGAAAGTGCTTGTGAAATCTTGGA
AGAAGTAAGTTTTTCCTTTGTTTATTCTGTTTTTTTATGTGAAATATCAT
ACTGAAAAATATTAAAAACATCTTTTAGATTTTAACTACTTTAAATGAAA
AATTTCTTATAATCCTTAAAAATATTTTNATTTGCGGGTCAATACTGCGG
GTTATTCCAAATCGCTTCAGTCACTCCGTTCAGTGTTCTCAAAAGTGAGA
ATACAAAACCTCGCAATTTTGGAGACAGTAATATTAGTCTAGATGCTGAC
TGCTTTAAAAGTATCACAATTTCCTTTAAGCGTTATCTATTTACTTTTTT
AGGTGCTTGGGATATGTGGTGGCTTCCGCCAACAAAAAAAGCTCCCAAAA
ATCTCAAATTCATGATCTCAACATTAAACCAAGAAAATGGGACATTTCAG
AACGCTTGTCATGTTTCACCAGATGCACAACGACTTCCCATCGAAAACAT
GAGCCATGAAGATTTGCAAGAAATGGTCCGAGCAACACTTGAAAGGTTTA
ATAAGAAGCTTACCGAAAATGAGGATCCGATTCTGGGAAATCAAATGGAG
AAATTGTTGTCCAAAAGTCAAAGTCCATTGTACTTAATCGCTGCATGTGA
GGCGTTGAGAAAGTTTGGAATTTTCGAGAAAGTGACCCAGTATATTGAGA
GTCTACCAAACACCATTACAGACCTGTTTAGCTTCCTTTTAGACGAATGG
TCTGAAAAGTATGGTAAACTATTTGTGGAGGACGTAGCAGGATTATTGTG
TGCTTCAAAAGATGGCTTACTGGAAAACCAAATCAACGATCTTCTGCATT
TTAAAGAACAAAGAGAAAAAGGCGATGGGGAGTTTCTGTACGATGCAAAT
TTTCCAAGAATCTACGATTCGATTGCCAAATTCTTAGCTGCTGGTAGGTC
TTTTTTTCGTTCATCACTAGCAGTATACTAGCAAATATACCTGCTCCAAT
GACAATGACTTCCTCATCATGGTTTAATAACAACTATAACTATATTTTCA
TTATCTATTGGAAAAGGCATTTATCAAGAAAAATTTGCTATCGTGATCGG
AACGGCCGCCGGCCTCTTTCGATAGTTGTCTACTCGAAGGTTAGGGTGGT
AGGGCACACCCTTTCTCCCTCGGTTGGTCCACATACCCTTAATTCACATC
TTTAATTTCTAAGCATTGAGCAGATAAAGCATCATGTACACAATTACGTG
CTTCAGGGCTCTGACCATAGTGAATTTTTAATATTTACCATTTACAAAAT
ATAAAGTTCTACTTGATGTAGCCCACAAAACTGTGGCATGTTATACATTT
TCTGCTAACCCAATTATCCGTGAGTCTGAAAATTTAAGAATCGCAATGAG
AAAATTTGATGAAGAAGAAAATGAAGACTTTTATGAAGAAGAGTAGTTCA
AATTTGGAAGAGCTTAGTTTCAGCAAAGAAAAAATATTTTGAAAATTTTT
TTGCGGTAGATGGTGTATCTTTTATCGAACTAAAACTTTTTTTTCTGGCA
AATTTTTCTAAATCTTGAAAAGAGTGCTTTTTGATCAATTTTCCATCCCA
ATTTTTCATAGAAAAACAGCCATAACTTTTGATGCATTAATTTAGAAAAT
TTTTCCGAAAAATTTAAAACAGTTCAATTTTTTGCGGACAGTTTGTAAAA
ACTTCGAAACAAAAACGTTAATTACCCATTAAAACTTAGCACTTTTTATA
AGAGAAAGTGATGCAAACATATCATTAACGTCTTTTTAAAGTTCATAACA
TCATTTTTGCAATTAAATTCTTAATTACTCTTAACCCTATTCGTACTAGG
GGGGGGGCTCTTTCTGTTCGGAAGTCAAACTATTGGTAATAGCTCCTGAA
ATAATAGAGCTTTTGCCGTGAAATTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATTTCATCCAAAAAGACCCACTAGAGCAAAAGTTA
AGGGGTGGTACGGGAAAACCCCCCCCCCCCCCTAGTTCTGAACCGCCCCT
AAAAGCCTAGTATGAATAGGGTTAAGGGATTTGCTTAAAAAGCAATTTAT
AAAGGCAATTCTTTGTTGAAAGTATTAAAGAACCTAAAACATAACTAAAA
TACATAAATACTGAAATCAATTTTCCGACTATGGTCAGAACCCTTAAATT
ATGAGAATTTTCAGAATCACATTTAATTTTATCGGAAATACTCCACTCTC
CCTTACTACAATGATGGATGAAGATTCAAGCGAAAAACGGACCGGTAGAG
CCTTCCTTCAGCATTGTAGTAAGGGGGAAGACTGGTTCAAGCTGTGGTAA
AAATCAAAAATTCGCATTATATTATGCACAAAATTGTACCTTTTTGGGTA
ATCTTTGGTATACCAGGCGAGGGATTAAACCCCCATTAAACCCTAAATCT
CATGCACCGTAGTCGAATGCACTACCTCTGCACTTCGGTCATTCAAACTT
TCGAATTCAACGAATACACATTTCTTAACGAGTTGCACAAGACTCGAACT
TTAAAACGGCCCAAAAATAAAAGCAACTTAGCTTAGAAGCCCTAAATCTG
GAAAAAAGAAAATAAGAAAATCTCAAATGTGGTTACTGCATTATTTGTTA
TTTGTTAGAAAGGGTTTTAGAGGTACCGTCAGTAAAATTTTGAAAGTCCT
TAGCGACTTCAGACTTGAACTTAAAATGTATCAACAAATAAATATGAAAA
AAACTGGTCGCATAAAATAGAAACTATGTCTTTTTAGGTGGTGGTGGCTA
TCTTCGATTCTTCCACGACCAGCTCAAATATGCCGTGCGCCGAAAATTTA
TGACAGAATCATTCGAACAAGAAACACACGCGTGGATGAGAGATTTTTTT
GAAGACATTATCACCAAGCAATGCTGTGAAACACCTCAAGAGGAACCACC
AGCATATTTCGAACATGCCCTAGAACAACTGGTCTACCATCAACTCAAAG
CTCGCCAGAATCAAGATTCACCTCTTGAAAGCTTGAAAATGAGTTTGAGG
AATATTTACTTTGTTAAAGAACGCATTGTTGCCAAGCAACATCAAAGCCT
TAGTGACGAATACACTCTCGCCTTGGACACACTCACAAATGCAGATGACA
TAGATGCTCTCAAGCAATGGGCCTCGTTTGTTCAGCTCTATACACCGTAC
ATTCGGGAATTCCCGAATTTCTGCCTCAACATGGCTGTATCACAAGCCCC
AGTCTCAAATGTTACCAAAGATACCTTGGCTTTAGGGACGGAGCCCTCAG
TCAAAGGGGAAGCGTACCCGTTATATTGGGCCAATATACCTGAGGAATGT
GACCCAATGTTGGTTAAATATGATCATGGTGGAAGGGACATTGCTGCTTC
AGATACACAAGGAGATATAGTGGCTATTGCAGCTGGAAGTAAGGTTAAAA
TCCTGGATCAAAGTAGCGGTGAATTAATTCACATATTGAATGTCCCTGGC
ATGGCTGTTTGGGTTTCAGTTGATGGTAAAAGCTTACTCGTGGGTGATAT
GAAGGGGAAATTATCGTGGTGGGATGTTTCCACAGCCACTATGGAAGATT
CAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011691XLOC_011691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020851-exon-sc0000371-1575043694:126439..127028TCONS_00020851-exon-sc0000371-1575043694:126439..127028Clytia hemisphaericaexon
TCONS_00020851-exon-sc0000371-1575043694:121025..121841TCONS_00020851-exon-sc0000371-1575043694:121025..121841Clytia hemisphaericaexon
TCONS_00020851-exon-sc0000371-1510915933:126439..127028TCONS_00020851-exon-sc0000371-1510915933:126439..127028Clytia hemisphaericaexon
TCONS_00020851-exon-sc0000371-1510915933:121025..121841TCONS_00020851-exon-sc0000371-1510915933:121025..121841Clytia hemisphaericaexon
TCONS_00020851-exon-sc0000371-1491911889:126439..127028TCONS_00020851-exon-sc0000371-1491911889:126439..127028Clytia hemisphaericaexon
TCONS_00020851-exon-sc0000371-1491911889:121025..121841TCONS_00020851-exon-sc0000371-1491911889:121025..121841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000371supercontigsc0000371:121025..127028 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.90005	3.04968	1.71019	1.70583	4.62759	3.53456	3.29262	4.72599	2.27029	3.51189	1.88703	2.19561	0.307516	0	0.554087	0	2.86592	3.42504	0.147392	1.42234	5.0097	4.67128	3.17161	3.92165	2.07834	2.54863	4.62338	3.27228	1.23302	1.56482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top