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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020473 ID=TCONS_00020473|Name=TCONS_00020473|organism=Clytia hemisphaerica|type=transcript|length=867bp
TATATGAATAGCAAACTGCATTGGAAAAGCAGTATAGATATTAGGGGACA
TAAAAAGGTCtagaaataaagtaaaaatgaaTATTCAACTTGTGTataat
ttgatcattttgatGGTTCTGAGGAACACCAGAGCTAAAGTAGAAGAACA
CAAGATTTCAGATGAAGAACATTTTCACAAGGATGGGAAGCATGACACAT
CATATGACCATGATGCGTTCTTAGGGAAAGGGCATGGACACGACTTTGAT
GGTCTAGAACCGCAAGAAGCCAAACGAAGATTGAGAGAAATGCTTAAAAA
GGTTGACACGGACAAAGATGGATTCATTTCATTCGAAGAACTTCGTGATT
GGGTGGATAAACAAAGGATATCGTACATGTGGGAGACACTGGATACAAAC
ATTCGACAAAATGATGATGACCATGATGGCTTGATCACGTGGATCGAATA
TAAACATTCTCAATTTGGAAAATGGGAAGACGCAGAGACGGAGATAGATG
CTAAATTACAAGCACGTATTAACAAATCAGAGAAGAAATTCAAGCTCGCT
GATACAAATGGTGACGGCAAATTAAGTCGCGACGAATTCGCATTTTTCCG
ACATCCTGAAGAGAGTCGAGATGAGAAATTACAAGACATTGCTGTCGATG
AGGTCATTGATGATATGGACCAAAATGGTGACCGgaaaattgaTCAAGAA
GAATTTTTGGGTCAATACGTGGACGATGCAAATAATCCCCCTGATTGGGT
CCTCGAAGATAGAAAACATTTCCGTGACAAGCTAGACAAAAACAAGAACG
GAATGTTGGAGCGAGAAGAAATGAAAGCCTGGGTACTACCCAATCGTGAT
GACACATTGAAAGAAAC Run BLAST on NCBI transcript from alignment at sc0000357:130856..135142+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020473 ID=TCONS_00020473|Name=TCONS_00020473|organism=Clytia hemisphaerica|type=transcript|length=4287bp|location=Sequence derived from alignment at sc0000357:130856..135142+ (Clytia hemisphaerica)
TATATGAATAGCAAACTGCATTGGAAAAGCAGTATAGATATTAGGGGACA
TAAAAAGGTCtagaaataaagtaaaaatgaaTATTCAACTTGTGTataat
ttgatcattttgatGGTTCTGAGGAACACCAGAGCTAAAGTAGAAGAACA
CAAGATTTCAGATGAAGAACATTTTCACAAGGATGGGAAGCATGACACAT
CATATGACCATGATGCGTTCTTAGGGAAAGGGCATGGACACGACTTTGAT
GGTCTAGAACCGCAAGAAGCCAAACGAAGATTGAGAGAAATGCTTAAAAA
GGTAAGGAGAGTATAGAGATTACATAGatcagcaaaatttcatagTGATA
ATCCAAAGAAGTGACAAGCTGACGTTATATAGATGTTATGAATGTTAAAT
TGCTGAAACTCTACACTCATGCATCACACTTAAAACAGGTCTAAAAATCA
GTTCTGAAGCAGATTTTAACCTTTCAAATTTAGTGAAATAGTCATCAGGT
GTATTATTTTTCTGGCTAAACAAAGCCCTAATGCCAAAACATATTCGACT
AACAAAGCATTTATGAACTTTCCAACAGTTaccaaaaatgattttgtcCG
TCTTTGAAGATACTAAAATGCAGGAGAACGACGTCAACAGAGATCGTCTT
GACcttgaaatgaatgaaaatggcTGAAATCTAACACAAGTTTAACATAA
GTCCATATATAGGTCTTAGATTTACCAGAAAAAAAGCGCACATAaccaga
aatatgattttgttAGAAGTTGATTAAATAAGAGTGGCGAATTGATAGAA
AGTTCCATTTTTAATCTGACAGGTTGACACGGACAAAGATGGATTCATTT
CATTCGAAGAACTTCGTGATTGGGTGGATAAACAAAGGATATCGTACATG
TGGGAGACACTGGATACAAACATTCGACAAAATGATGATGACCATGATGG
CTTGATCACGTGGATCGAATATAAACATTCTCAATTTGGAAAATGGGAAG
ACGCAGAGACGGAGATAGATGCTGTAAGTAACACTGCTGAGTCTCCCGGA
ACTCTCTACAGTCAATTCTTTCTAGTTCGAATctctataatttgaataaa
atcaaattagaAAGAATAAACTGTAACTTGAATGTCTTGTCAGCTCAAAA
CAGGTTGTCTGGTTGCAGGTTATCAGACATCAAATCTCCATAACTTGGAA
CTCTATTATAAGTCGAATTCCTCTAAGCCCGAAAAAGGTTATCTGGTCCC
TTCAGACATCAAATCTCcataatttgaacaaatttgcGTTTCTTTAGCCG
TTCAAATGTATTTAATGATTCTTATATAAGACAGCTCATGACTGAAGCGT
GAATGCAACAGAACAGGTCATTTTCTCTCCCCGTATCTCACTTCAACAAG
ACATAAAGATCAGCTTTCCAAAGAAATTAGCAAAGATCAGCACATAGTGA
ACGAGCTACAGTtgacactctataattcgacaTTCTAATGTTCGATGCGC
TCcgttattcgataatattgaaagtcaccgtcaataagagactctctaaa
cgacgctctattattcgatgaaaattcgaTTCcccatgaagatcgaatta
gagagcgtcatcTGTATTTTGATATGGCACAAAAGCAACGAAACTGCGAG
CTTTTAGTATTAACGCCAATCAAGTAACGTGTTGagcattttcaaatatt
gtgCCATATTTTTCCATAGAAATTACAAGCACGTATTAACAAATCAGAGA
ACAAATTCAAACTCGCTGATACAAATGGTGACGGCAAATTAAGTCGCGAC
GAATTCGCATTTTTCCGACATCCTGAAGAGAGTCGAGATGAGAAATTACA
AGACGTTGCTGTCGATGAGGTCATTGATGATATGGACCAAAATGGTGACC
GGTAGGTGGTTTTTAAACATTGTTTTAAGTGCTTCCAGTGTTGCCAAACA
GTGATAATGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAATTTTC
tagctcgcttcgctcgcacactcccttttttgtgttcataatgagcgtat
agagaggggcgccaaaaacaaaaaatctttaaaaagggcgccgtatttgc
cttggccaccccagagaaattttcccaccacgccactgtcTTTAGCCGTT
CAAACGTATTTAATGATTCTTTTATAAGACGGCTCATGACTGAAACGTGA
ATGCAACAGAACAGGCCCGTATCTCACTTCAACAAGACAAAAAGATCAGC
TTTCAGTCTTTCAAAGAAATTAGAAGAGATCAGTTCATAGTGAAAGAACT
TTTTCGATACGGCACAAAAGCACCGACTCTGAGCCTTAGTATCAACGCCA
ACCAACTAAGTATTGCATTCAACATTTTCACACATTTGTACCATATTTTT
TCCATAGAAATTACAAGCACGTATTAACAAATCAGAGAAGAAATTCAAGC
TCGCTGATACAAATGGTGACGGCAAATTAAGTCGCGACGAATTCGCATTT
TTCCGACATCCTGAAGAGAGTCGAGATGAGAAATTACAAGACATTGCTGT
CGATGAGGTCATTGATGATATGGACCAAAATGGTGACCGGTAGGTGGTTT
TTAAACATTGTTTTAAGTGCTCTCAGTGTTGCCAAACAGTGATAATGCAT
ACTTTTTGCTTTTGTGCTtctaatataatataatataatatataataaaa
attttggctGTGAATAAGGTCCTATATATGTTTGGCTCAAATTGTCTCGA
CCATATATCATAAAAGGGGCAGCCAAGGAATTGCTTCATATATAAGAGCG
AGAATAGAGCAAGTTGAATGGAGCACAAcatttgactttatttttatttt
tcaggaaaattgaTCAAGAAGAATTTTTGGGTCAATACGTGGACGATGCA
AATAATCCCCCTGATTGGGTCCTCGAAGATAGAAAACATTTCCGTGACAA
GCTAGACAAAAACAAGAACGGAATGTTGGAGCGAGAAGAAATGAAAGCCT
GGGTACTACCCAATCGTGATGACACATTGAAAGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020473-exon-sc0000357-1491911889:130856..131156 | TCONS_00020473-exon-sc0000357-1491911889:130856..131156 | Clytia hemisphaerica | exon |
| TCONS_00020473-exon-sc0000357-1510915933:130856..131156 | TCONS_00020473-exon-sc0000357-1510915933:130856..131156 | Clytia hemisphaerica | exon |
| TCONS_00020473-exon-sc0000357-1575043694:130856..131156 | TCONS_00020473-exon-sc0000357-1575043694:130856..131156 | Clytia hemisphaerica | exon |
| TCONS_00020473-exon-sc0000357-1491911889:131678..131878 | TCONS_00020473-exon-sc0000357-1491911889:131678..131878 | Clytia hemisphaerica | exon |
| TCONS_00020473-exon-sc0000357-1510915933:131678..131878 | TCONS_00020473-exon-sc0000357-1510915933:131678..131878 | Clytia hemisphaerica | exon |
| TCONS_00020473-exon-sc0000357-1575043694:131678..131878 | TCONS_00020473-exon-sc0000357-1575043694:131678..131878 | Clytia hemisphaerica | exon |
| TCONS_00020473-exon-sc0000357-1491911889:134513..134694 | TCONS_00020473-exon-sc0000357-1491911889:134513..134694 | Clytia hemisphaerica | exon |
| TCONS_00020473-exon-sc0000357-1510915933:134513..134694 | TCONS_00020473-exon-sc0000357-1510915933:134513..134694 | Clytia hemisphaerica | exon |
| TCONS_00020473-exon-sc0000357-1575043694:134513..134694 | TCONS_00020473-exon-sc0000357-1575043694:134513..134694 | Clytia hemisphaerica | exon |
| TCONS_00020473-exon-sc0000357-1491911889:134960..135142 | TCONS_00020473-exon-sc0000357-1491911889:134960..135142 | Clytia hemisphaerica | exon |
| TCONS_00020473-exon-sc0000357-1510915933:134960..135142 | TCONS_00020473-exon-sc0000357-1510915933:134960..135142 | Clytia hemisphaerica | exon |
| TCONS_00020473-exon-sc0000357-1575043694:134960..135142 | TCONS_00020473-exon-sc0000357-1575043694:134960..135142 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000357 | supercontig | sc0000357:130856..135142 + |
Blast
BLAST of TCONS_00020473 vs. Swiss-Prot (Human)
Match: CALU (Calumenin OS=Homo sapiens GN=CALU PE=1 SV=2) HSP 1 Score: 155.992 bits (393), Expect = 1.479e-44 Identity = 83/217 (38.25%), Postives = 142/217 (65.44%), Query Frame = 2
Query: 203 YDHDAFLGKGHGHDFDGLEPQEAKRRLREMLKKVDTDKDGFISFEELRDWVDKQRISYMWETLDTNIRQNDDDHDGLITWIEYKHSQFGK-WEDAETEIDAKLQARINKSEKKFKLADTNGDGKLSRDEFAFFRHPEESRDEKLQDIAVDEVIDDMDQNGDRKIDQEEFLG-QYVDDAN-NPPDWVLEDRKHFRDKLDKNKNGMLEREEMKAWVLPN 844
YDHDAFLG FD L P+E+K RL +++ K+D DKDGF++ +EL+DW+ + +++E ++ + +D + DGL++W EYK++ +G +D + + + + + E++FK+AD +GD +++EF F HPEE + ++DI V E ++D+D+N D ID EE++G Y D N + P+WV +R+ F + DKN++G +++EE K W+LP+
Sbjct: 47 YDHDAFLGAEEAKTFDQLTPEESKERLGKIVSKIDGDKDGFVTVDELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVLDDPDPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEY--DYMKDIVVQETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEETKDWILPS 261
The following BLAST results are available for this feature:
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