TCONS_00020274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020274
Unique NameTCONS_00020274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020274 ID=TCONS_00020274|Name=TCONS_00020274|organism=Clytia hemisphaerica|type=transcript|length=331bp
attttctcaaaattagaCTTGAATGtgtaaaagtcaatttttgattCATA
CCCTGCAAATGGTTGAAGCTTGATGTTGAGTGACAGCTTGTTGAAGGTAT
TGAATTTGTCTGGTTCACGATTGCTGGTTTCAGATTCAAGTGATTTGGTA
TAAATTTGTTTGAGCGTggtaagtttttcaaaatgtttactGATACTTTT
AACGTCATCGTCTCGTTGTTTATCGAGTACTGGAGATTTTAAGAGTTCTT
TGTACTCAACAGCAactttatcaaactttttgagaTGATTGTGTTGGTTG
GTCTTCCATTCGATTAGCTGTCCGAGAGAAG
Run BLAST on NCBI

protein sequence of TCONS_00020274-protein

>TCONS_00020274-protein ID=TCONS_00020274-protein|Name=TCONS_00020274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
SLGQLIEWKTNQHNHLKKFDKVAVEYKELLKSPVLDKQRDDDVKSISKHF
EKLTTLKQIYTKSLESETSNREPDKFNTFNKLSLNIKLQPFAGYESKIDF
YTFKSNFEK
Run BLAST on NCBI

transcript from alignment at sc0000350:473803..474133

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020274 ID=TCONS_00020274|Name=TCONS_00020274|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at sc0000350:473803..474133 (Clytia hemisphaerica)
CTTCTCTCGGACAGCTAATCGAATGGAAGACCAACCAACACAATCAtctc
aaaaagtttgataaagtTGCTGTTGAGTACAAAGAACTCTTAAAATCTCC
AGTACTCGATAAACAACGAGACGATGACGTTAAAAGTATCagtaaacatt
ttgaaaaacttaccACGCTCAAACAAATTTATACCAAATCACTTGAATCT
GAAACCAGCAATCGTGAACCAGACAAATTCAATACCTTCAACAAGCTGTC
ACTCAACATCAAGCTTCAACCATTTGCAGGGTATGaatcaaaaattgact
tttacaCATTCAAGtctaattttgagaaaat

Coding sequence (CDS) from alignment at sc0000350:473803..474133

>TCONS_00020274 ID=TCONS_00020274|Name=TCONS_00020274|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0000350:473803..474133 (Clytia hemisphaerica)
TCTCTCGGACAGCTAATCGAATGGAAGACCAACCAACACAATCAtctcaa
aaagtttgataaagtTGCTGTTGAGTACAAAGAACTCTTAAAATCTCCAG
TACTCGATAAACAACGAGACGATGACGTTAAAAGTATCagtaaacatttt
gaaaaacttaccACGCTCAAACAAATTTATACCAAATCACTTGAATCTGA
AACCAGCAATCGTGAACCAGACAAATTCAATACCTTCAACAAGCTGTCAC
TCAACATCAAGCTTCAACCATTTGCAGGGTATGaatcaaaaattgacttt
tacaCATTCAAGtctaattttgagaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011378XLOC_011378Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020274-proteinTCONS_00020274-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020274-exon-sc0000350-1491911889:473803..474133TCONS_00020274-exon-sc0000350-1491911889:473803..474133Clytia hemisphaericaexon
TCONS_00020274-exon-sc0000350-1510915933:473803..474133TCONS_00020274-exon-sc0000350-1510915933:473803..474133Clytia hemisphaericaexon
TCONS_00020274-exon-sc0000350-1575043694:473803..474133TCONS_00020274-exon-sc0000350-1575043694:473803..474133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:473803..474133 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.283569	0.329251	0	0.784302	0.309883	0	0	0	0.303529	0.294613	0	0.386795	0.602536	0	0.354403	0	0	0	0	0	0	0	0.303125	0.624424	1.86157	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top