TCONS_00020103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020103
Unique NameTCONS_00020103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020103 ID=TCONS_00020103|Name=TCONS_00020103|organism=Clytia hemisphaerica|type=transcript|length=1465bp
agACAATCAACAACAAATGTTGCAACAAATGATCAgccagcaacaacaac
aacaacaacaacaacgttCCATGCAGCAAAACAATCCACAACAACAGCAA
GCTGGCAATGACATGCAGAATATGAGGAATAACATGATGCAACAACGACC
CAACAACTTTCCACCTTCCATACAACAGTTGAACAACAGTAACATTCAAT
TACAACAACAGTTACAACGAAGTCGTCAACAACAATTCCTTCAACAACAT
ATCAAAAACCGTATGAATGCATCGAATATGCAACGCCAATTATCATCAGG
TAGCAATGCTTCAAATAGTTCGGGCGGTGGTGCTCCCATGATGGCCGGAA
ATGATTTCACGAACCAGCAACAGGGTGGTAACAATATGATGAATAActtc
caacaacaacaacaacaacaacaaaacccTCAACAAATACAAATGATGCA
ACAACAATTTAACCAGCAACAACAAAATACTAATAATAATCAATTCAACC
CTGGCGGACAAAACCCTTTCTCAATGTAAAACTGTTCAAGGAAATAATTG
CTGTCGTTCATGATGTATATGGTAATAGATGGCTTGATAACAGCTATCGT
TGTTCGGAAAATAAGAGTCCCTTTTCCACAAAATGACTATTTTACTTAAG
CTTTCTCATTGTGAAGCTTTTGTCGACAAGGGACATTTACTGGCATTGTA
CTGTTCGATGTTCAAGCTCTTGGAGATTAATGACCCACAATCGGACCACA
TCTGAGGCGGTGTTACTCATTGGTGGAAACCCCGTTATACGCCCCGTTTT
ACGCCCCAGCAACGAGTTTCCACTTCTTTGCTCGAGCAACCCGCTCCGCA
ATTAATCGTAGTAATGCTTTATGGAGGTAAAGCTTTTGTTAACGACACAA
TAACTTTAATAGATAATTAATTCCTGTCTGGAAAACATAATTCAGAATTC
TGTTTGCGACAGACCATGCGAGGAGAGTATCTAATGTGATTGTGAGACTA
AATACCCCTTTGTAAGTAGTGGTTTCATAAGATAATACGATATATCGACA
CGATTTATTTTGTATTTAGACTAGTGAATTTTGGCGGAGCCTCATCTATT
TATCAACAATCTCTCAAAATTGAGCCTCAGATTATATTTTAAAAGCTCTG
GAAGTTGCTATGTATTATCAAAAAGGAATGCAGTTCCTGTTTTTAGTCTA
AGCATACGCTCATAATTTGATGGggtgagatggagtttttacaagctctt
atttgatttggttggtcgttaaccagtaataaaacaattttgttactttt
tctaaagagcgcgtcatttttattacttctattacttcaaatgaccaatt
attaaagtatcttataaaaactccatctcatctgaattTGATGGGCCAGT
CAAACGGTTTCAGTTTTAAAAGGTAGATTCTTCTTGGAATATGGTAAAGT
TATTTGCTTAGATTT
Run BLAST on NCBI

protein sequence of TCONS_00020103-protein

>TCONS_00020103-protein ID=TCONS_00020103-protein|Name=TCONS_00020103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
DNQQQMLQQMISQQQQQQQQQRSMQQNNPQQQQAGNDMQNMRNNMMQQRP
NNFPPSIQQLNNSNIQLQQQLQRSRQQQFLQQHIKNRMNASNMQRQLSSG
SNASNSSGGGAPMMAGNDFTNQQQGGNNMMNNFQQQQQQQQNPQQIQMMQ
QQFNQQQQNTNNNQFNPGGQNPFSM
Run BLAST on NCBI

transcript from alignment at sc0000349:67375..71175+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020103 ID=TCONS_00020103|Name=TCONS_00020103|organism=Clytia hemisphaerica|type=transcript|length=3801bp|location=Sequence derived from alignment at sc0000349:67375..71175+ (Clytia hemisphaerica)
agACAATCAACAACAAATGTTGCAACAAATGATCAgccagcaacaacaac
aacaacaacaacaacgttCCATGCAGCAAAACAATCCACAACAACAGCAA
GCTGGCAATGACATGCAGAATATGAGTAAGGNCAACAAGTTGCACCGAAC
GTGAGTGTTGTTATACTTTACTTACTACTAAAGTGTTTTTATACTCCTTG
ACATTTTATTGACTTTATAATAAATGATGGTCATTTTGTTCAGCTAAAGT
TTTGCGAAAAAGGAAGTCTTACTCACTTGTCCGTCCAGTTTCACTGCgat
atttttttacaagaactttATTTCCCAGCCTACACCACATGTCACAACCC
TTTTCCTACATCtgttccactttgcgactttctCAGATGTTTGGAGTCAA
AGTTTtccgggctctaaacattcgaaaaaactTGTCATCAAAACTTAACT
TCTGCTTAAATAGTGGATGGACTATACCTTCTAATTATTCTTGAAACAAA
TTTTCANCAGTTTTGTTACCTCATACTCACAAATagtgaaatttgattgg
ttcctTTTATGTATTGTCCGATGGCTAGTGATTCATATAACATAGTTGTT
TCAAGGACTACCTTTCCAAATATCTCCCAAAAGAATTTCTGTTCCAAAAG
AAAGGCCCGTTCTCGAATTTACCacataattcatgatatgcaccactgca
atgtcttctgacatcacatcacagacccaatagctgattggttgtaagtg
acgtaaaataagtcaataagccactttcaaccaatcagctgttgtgtccg
tggaagacattgcaatggttaTGAATTGACGCCGTTCCATCCTAGTAAAC
TCAAACCCATTCCCCTTGTAGTAAAGTTTATAATTAGAGTCAACTCACTC
TAagtcgaacctctattattcgaacctTTCTGTAAAAAGAACTAAAATGT
TGGTCCCCTTAGCTGGAAaatggtttaaattactctctgtaattcgaatc
tttctataattcaaagaaaatcccatgaagatcgaattagagggaGTCAA
CTGTACTTCATCGTGGCTTGAAGCACGAGTTTTGCGTAAGAccaaaggta
aaaaaaaacttttgagcaAAGCCACGGTAAACTCCCAATATGAATGTGAG
TTGGTCGGTAACTTANCTCCACCCCAAATCTCttccatttcattttattt
tttctcattcAGACAATCAACAACAAATGTTGCAACAAATGATCAgccag
caacaacaacaacaacaacgttCCATGCAGCAAAACAATCCACAACAACA
GCAAGCTGGCAATGACATGCAGAATATGAGTAAGAACTGTCACAGTTTTG
TTACCTCATACTCACAAATagtgaaatttgattggttcctTTTATGTATT
GTCCGATGGCTAGTGATTCATATAACATAGTTGTTTCAAGGACTACCTTT
CCAAATATCTCCCAAAAGAATTTCTGTTCCAAAAGAAAGGCCCGTTCTCG
AATTTACCacataattcatgatatgcaccactgcaatgtcttctgacatc
acatcacagacccaatagctgattggttgtaagtgacgtaaaataagtca
ataagccactttcaaccaatcagctgttgtgtccgtggaagacattgcaa
tggttaTGAATTGACGCCGTTCCATCCTAGTAAACTCAAACCCATTCCCC
TTGTAGTAAAGTTTATAATTAGAGTCAACTCACTCTAagtcgaacctcta
ttattcgaacctTTCTGTAAAAAGAACTAAAATGTTGGTCCCCTTAGCTG
GAAaatggtttaaattactctctgtaattcgaatctttctataattcaaa
gaaaatcccatgaagatcgaattagagggaGTCAACTGTACTTCATCGTG
GCTTGAAGCACGAGTTTTGCGTAAGAccaaaggtaaaaaaaaacttttga
gcaAAGCCACGGTAAACTCCCAATATGAATGTGAGTTGGTCGGTAACTTA
TttactttaaactttttgaaaaactctTTATTACACATTCCTTCGTTACC
ATAACAACCATAGGGAATAACATGATGCAACAACGACCCAACAACTTTCC
ACCTTCCATACAACAGTTGAACAACAGTAACATTCAATTACAACAACAGT
TACAACGAAGTCGTCAACAACAATTCCTTCAACAACATATCAAAAACCGT
AAATTCCCAATTCCCATTTCCCCTCCTTTCCCAGTTTGCCAGTTCCCAAT
TTTCCCCCTAAATTCCTTTTATCATTTTCCCGTTTCCCCTCGCACCCTAG
TTCTTGCGTTTCGTACATCCAATCGAATCTTTAAACTCCCTTGTTTATGA
GCACCTCCAATGTGATATGTCTGAAAACCCCTCTGATCGATCATATACTC
CCAAACTCTCTGCTTGACACACTTCTACCTTACCAAAAAATCTCTCAACC
CGGCATCCTTGAAACTACAGATAAACTCCCCGATGCATTTTGTTGACGGA
TAATAGTGACAAACCTGACTTATAAAATGATGCTCTCAAAGGCAAGAATA
CAAAAGGACTTTGAAACTAATGCCCAATCCTTTTTCTCACCTACAGGTAT
GAATGCATCGAATATGCAACGCCAATTATCATCAGGTAGCAATGCTTCAA
ATAGTTCGGGCGGTGGTGCTCCCATGATGGCCGGAAATGATTTCACGAAC
CAGCAACAGGGTGGTAACAATATGATGAATAActtccaacaacaacaaca
acaacaacaaaacccTCAACAAATACAAATGATGCAACAACAATTTAACC
AGCAACAACAAAATACTAATAATAATCAATTCAACCCTGGCGGACAAAAC
CCTTTCTCAATGTAAAACTGTTCAAGGAAATAATTGCTGTCGTTCATGAT
GTATATGGTAATAGATGGCTTGATAACAGCTATCGTTGTTCGGAAAATAA
GAGTCCCTTTTCCACAAAATGACTATTTTACTTAAGCTTTCTCATTGTGA
AGCTTTTGTCGACAAGGGACATTTACTGGCATTGTACTGTTCGATGTTCA
AGCTCTTGGAGATTAATGACCCACAATCGGACCACATCTGAGGCGGTGTT
ACTCATTGGTGGAAACCCCGTTATACGCCCCGTTTTACGCCCCAGCAACG
AGTTTCCACTTCTTTGCTCGAGCAACCCGCTCCGCAATTAATCGTAGTAA
TGCTTTATGGAGGTAAAGCTTTTGTTAACGACACAATAACTTTAATAGAT
AATTAATTCCTGTCTGGAAAACATAATTCAGAATTCTGTTTGCGACAGAC
CATGCGAGGAGAGTATCTAATGTGATTGTGAGACTAAATACCCCTTTGTA
AGTAGTGGTTTCATAAGATAATACGATATATCGACACGATTTATTTTGTA
TTTAGACTAGTGAATTTTGGCGGAGCCTCATCTATTTATCAACAATCTCT
CAAAATTGAGCCTCAGATTATATTTTAAAAGCTCTGGAAGTTGCTATGTA
TTATCAAAAAGGAATGCAGTTCCTGTTTTTAGTCTAAGCATACGCTCATA
ATTTGATGGggtgagatggagtttttacaagctcttatttgatttggttg
gtcgttaaccagtaataaaacaattttgttactttttctaaagagcgcgt
catttttattacttctattacttcaaatgaccaattattaaagtatctta
taaaaactccatctcatctgaattTGATGGGCCAGTCAAACGGTTTCAGT
TTTAAAAGGTAGATTCTTCTTGGAATATGGTAAAGTTATTTGCTTAGATT
T

Coding sequence (CDS) from alignment at sc0000349:67375..71175+

>TCONS_00020103 ID=TCONS_00020103|Name=TCONS_00020103|organism=Clytia hemisphaerica|type=CDS|length=2112bp|location=Sequence derived from alignment at sc0000349:67375..71175+ (Clytia hemisphaerica)
gACAATCAACAACAAATGTTGCAACAAATGATCAgccagcaacaacaaca
acaacaacaacaacgttCCATGCAGCAAAACAATCCACAACAACAGCAAG
CTGGCAATGACATGCAGAATATGAGGAATAACATGATGCAACAACGACCC
AACAACTTTCCACCTTCCATACAACAGTTGAACAACAGTAACATTCAATT
ACAACAACAGTTACAACGAAGTCGTCAACAACAATTCCTTCAACAACATA
TCAAAAACCGTATGAATGCATCGAATATGCAACGCCAATTATCATCAGGT
AGCAATGCTTCAAATAGTTCGGGCGGTGGTGCTCCCATGATGGCCGGAAA
TGATTTCACGAACCAGCAACAGGGTGGTAACAATATGATGAATAActtcc
aacaacaacaacaacaacaacaaaacccTCAACAAATACAAATGATGCAA
CAACAATTTAACCAGCAACAACAAAATACTAATAATAATCAATTCAACCC
TGGCGGACAAAACCCTTTCTCAATGTAAgACAATCAACAACAAATGTTGC
AACAAATGATCAgccagcaacaacaacaacaacaacaacaacgttCCATG
CAGCAAAACAATCCACAACAACAGCAAGCTGGCAATGACATGCAGAATAT
GAGGAATAACATGATGCAACAACGACCCAACAACTTTCCACCTTCCATAC
AACAGTTGAACAACAGTAACATTCAATTACAACAACAGTTACAACGAAGT
CGTCAACAACAATTCCTTCAACAACATATCAAAAACCGTATGAATGCATC
GAATATGCAACGCCAATTATCATCAGGTAGCAATGCTTCAAATAGTTCGG
GCGGTGGTGCTCCCATGATGGCCGGAAATGATTTCACGAACCAGCAACAG
GGTGGTAACAATATGATGAATAActtccaacaacaacaacaacaacaaca
aaacccTCAACAAATACAAATGATGCAACAACAATTTAACCAGCAACAAC
AAAATACTAATAATAATCAATTCAACCCTGGCGGACAAAACCCTTTCTCA
ATGTAAgACAATCAACAACAAATGTTGCAACAAATGATCAgccagcaaca
acaacaacaacaacaacaacgttCCATGCAGCAAAACAATCCACAACAAC
AGCAAGCTGGCAATGACATGCAGAATATGAGGAATAACATGATGCAACAA
CGACCCAACAACTTTCCACCTTCCATACAACAGTTGAACAACAGTAACAT
TCAATTACAACAACAGTTACAACGAAGTCGTCAACAACAATTCCTTCAAC
AACATATCAAAAACCGTATGAATGCATCGAATATGCAACGCCAATTATCA
TCAGGTAGCAATGCTTCAAATAGTTCGGGCGGTGGTGCTCCCATGATGGC
CGGAAATGATTTCACGAACCAGCAACAGGGTGGTAACAATATGATGAATA
ActtccaacaacaacaacaacaacaacaaaacccTCAACAAATACAAATG
ATGCAACAACAATTTAACCAGCAACAACAAAATACTAATAATAATCAATT
CAACCCTGGCGGACAAAACCCTTTCTCAATGTAAgACAATCAACAACAAA
TGTTGCAACAAATGATCAgccagcaacaacaacaacaacaacaacaacgt
tCCATGCAGCAAAACAATCCACAACAACAGCAAGCTGGCAATGACATGCA
GAATATGAGGAATAACATGATGCAACAACGACCCAACAACTTTCCACCTT
CCATACAACAGTTGAACAACAGTAACATTCAATTACAACAACAGTTACAA
CGAAGTCGTCAACAACAATTCCTTCAACAACATATCAAAAACCGTATGAA
TGCATCGAATATGCAACGCCAATTATCATCAGGTAGCAATGCTTCAAATA
GTTCGGGCGGTGGTGCTCCCATGATGGCCGGAAATGATTTCACGAACCAG
CAACAGGGTGGTAACAATATGATGAATAActtccaacaacaacaacaaca
acaacaaaacccTCAACAAATACAAATGATGCAACAACAATTTAACCAGC
AACAACAAAATACTAATAATAATCAATTCAACCCTGGCGGACAAAACCCT
TTCTCAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011299XLOC_011299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020103-exon-sc0000349-1491911889:67375..67486TCONS_00020103-exon-sc0000349-1491911889:67375..67486Clytia hemisphaericaexon
TCONS_00020103-exon-sc0000349-1510915933:67375..67486TCONS_00020103-exon-sc0000349-1510915933:67375..67486Clytia hemisphaericaexon
TCONS_00020103-exon-sc0000349-1575043694:67375..67486TCONS_00020103-exon-sc0000349-1575043694:67375..67486Clytia hemisphaericaexon
TCONS_00020103-exon-sc0000349-1491911889:68691..68703TCONS_00020103-exon-sc0000349-1491911889:68691..68703Clytia hemisphaericaexon
TCONS_00020103-exon-sc0000349-1510915933:68691..68703TCONS_00020103-exon-sc0000349-1510915933:68691..68703Clytia hemisphaericaexon
TCONS_00020103-exon-sc0000349-1575043694:68691..68703TCONS_00020103-exon-sc0000349-1575043694:68691..68703Clytia hemisphaericaexon
TCONS_00020103-exon-sc0000349-1491911889:69438..69572TCONS_00020103-exon-sc0000349-1491911889:69438..69572Clytia hemisphaericaexon
TCONS_00020103-exon-sc0000349-1510915933:69438..69572TCONS_00020103-exon-sc0000349-1510915933:69438..69572Clytia hemisphaericaexon
TCONS_00020103-exon-sc0000349-1575043694:69438..69572TCONS_00020103-exon-sc0000349-1575043694:69438..69572Clytia hemisphaericaexon
TCONS_00020103-exon-sc0000349-1491911889:69971..71175TCONS_00020103-exon-sc0000349-1491911889:69971..71175Clytia hemisphaericaexon
TCONS_00020103-exon-sc0000349-1510915933:69971..71175TCONS_00020103-exon-sc0000349-1510915933:69971..71175Clytia hemisphaericaexon
TCONS_00020103-exon-sc0000349-1575043694:69971..71175TCONS_00020103-exon-sc0000349-1575043694:69971..71175Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020103-proteinTCONS_00020103-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:67375..71175 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6716	10.5784	5.42551	4.11461	14.8065	11.4679	11.3981	14.8037	0.501761	7.97621	0.787519	6.95821	7.58505	11.685	7.13894	8.62934	7.00496	9.07687	0.0217988	9.38782	10.0439	8.90532	0.89025	10.5509	2.03508	3.51383	6.00023	6.62851	1.16721	1.49302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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