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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019984 ID=TCONS_00019984|Name=TCONS_00019984|organism=Clytia hemisphaerica|type=transcript|length=946bp
Gcgagaaacaaaaaaattacgtcactcaaaatgggaaattcccttccttt
ttttttgctgagcTCAGGGAAATTCCATGCATATTTCTCCGAATAGAAAT
AATGATTTATATGATAGCCTTTGAGAAGACCACTTCTCTCTACTACGGAG
TCTGCAAATCTCACAGAAAATGTCCGTTCTGTAAAGCTTTCTCAAgcagt
cttttttttaaatctctgaGTTTCAAATTACAGACTTTAAACTTcggatt
tgatgaaaaaagtaaGATCTATAGTCTATGGTAATATGGGAGAtgtgtaa
acaaaaaaaatttgagtgGGAAGTGAGATTTTGCTTACTTTTCAGTATTT
TTAAGTTGAGTTTTTGCAAGTTTACCAAGTTAAATCATAAAAAGCTTTCC
AGAGAAAGGCGTGATCATACCTCACATAACTTCTAACAGAAAGATAGCAC
AACAAACTTCAAAGGCAAATCAACCAAGAACTTCCAAAAAATGGTACTGT
ATGGACTACACCGGAACATTTTCTGTGTGCAAAGTGGATGTTGTTTATAG
AAGAAAAGGATAGgtaaagaaaattgatttttctgaCTCAAAATGAAACA
CATCTCGAATTACAGTCGGTCGGAGGATACGAACCAAACTATCCATTGGG
CCTGGCCTGCTAATGATTAATTGAGTCTCATAATCGATATGTAATCAAGA
CTATTttaaaatcttgagtatcgattgaTCATTGGTTGGATTCGActttg
caccgagtaggctttttgattgaaacatgaaaaaaatccgtagtggaaca
catgcAAGTGTCTAGtacgaagaagaacaaattagttgCAAAAGGATGGA
GCGTTTGTCGTCActtgcgcggcaagttacacactcgttatttgttaata
tCATCGGACGATAGGCAGTTAGATGGCGGGccttctctaattctcc Run BLAST on NCBI transcript from alignment at sc0000345:300418..303532+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019984 ID=TCONS_00019984|Name=TCONS_00019984|organism=Clytia hemisphaerica|type=transcript|length=3115bp|location=Sequence derived from alignment at sc0000345:300418..303532+ (Clytia hemisphaerica)
Gcgagaaacaaaaaaattacgtcactcaaaatgggaaattcccttccttt
ttttttgctgagcTCAGGGAAATTCCATGCATATTTCTCCGAATAGAAAT
AATGATTTATATGATAGCCTTTGAGAAGACCACTTCTCTCTACTACGGAG
TCTGCAAATCTCACAGAAAATGTCCGTTCTGTAAAGCTTTCTCAAgcagt
cttttttttaaatctctgaGTTTCAAATTACAGACTTTAAACTTcggatt
tgatgaaaaaagtaaGATCTATAGTCTATGGTAATATGGGAGAtgtgtaa
acaaaaaaaatttgagtgGGAAGTGAGATTTTGCTTACTTTTCAGTATTT
TTAAGTTGAGTTTTTGCAAGTTTACCAAGTTAAATCATAAAAAGCTTTCC
AGAGAAAGGCGTGATCATACCTCACATAACTTCTAACAGAAAGATAGCAC
AACAAACTTCAAAGGCAAATCAACCAAGAACTTCCAAAAAATGGGTAAGT
TTCCCAGCAGACAGCCAGAGAGTTTGCagttttacagaatttcaatattt
gattgacaaattattttttctcttttactttACTGTAGCCCAAGAAAGTT
TTCCAACTGGTGATTTGCCACAAGAGTTTTAATAACTTCTTCCGATCAAG
GCCAAGCCCAATTTGATTGTTTGGTTTATTAGAAGCTTTTAAAAATGGGT
TGGTCGGTCGGTGCGGTCAGTTTGGTCAGTAGCTAAAACTGgaacctttt
ttcattttcccaccaaaaacctcaatttttgaaattccttgNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCagt
tttacagaatttcaatatttgattgacaaattattttttctcttttactt
tACTGTAGCCCAAGAAAGTTTTCCAACTGGTGATTTGCCACAAGAGTTTT
AATAACTTCTTTCGATCAAGGCCAAGCCCAATTTGATTGTTTGGTTTATT
AGAAGCTTTTAAAAATGGGTTGGTCGGTCGGTCAGTTTGGTCAGTAGCTA
CAACTGgaaccttttttcattttcccaccaaaaacctCAATTCTTGAAAT
TCCTTgatcaatacaccgtttaacagtgtcgactgcgcacgcgcaCGCGT
ACaatgaacaattttccattgttttgattttggcaaccacgagaagaaac
ttcactctccccccgtaaaaaatggtaggtaaacatccagttctcataag
aaaaccccAGCAGataaatggtaggtaaagaactccttttaattgtaact
tcttttcctctaaatgaatttttgtgaaattttcaggagagatatactgt
acataaaattgtcattaaccctttaagtgccgatgtcgtatatatacgac
atgggctatataggagggcgaagccctcctgtaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNtaagctatccaacgagctatatacgagcttctaatt
ccttctagatcaggagatataagcccttaaagtttgaactagcgattttt
ttaaaaaaaacttagaaaaaaggaccctggcactcaaagggttaatatca
tgttcaaacatcttaaaaattctctttaaatgaaagaaaaaaaatggcaa
tgtttacatttctccaACCTTTCACAGTTCTAAAGTGaacatttttacct
accgcctctacggtggagatggcgagactgttaaaaAGTGTATTGCGCAA
TCCTGGAATCCAACCGCAAACGTTAAGAAATAGCCTAAGCTAAAGCCCAG
ACCCACAAAGGTATGCTTGGAGAGATTAAAGCGTTTGTGATGTCCGATGT
GTGCTTAGGGAATGAAGCCATGACTCTCTGCTTTTTTTAGGTGCTTAATA
TATTTGTTTTTAGTACTGTATGGACTACACCGGAACATTTTCTGTGTGCA
AAGTGGATGTTGTTTATAGAAGAAAAGGATAGgtaaagaaaattgatttt
tctgaCTCAAAATGAAACACATCTCGAATTACAGTCGGTCGGAGGATACG
AACCAAACTATCCATTGGGCCTGGCCTGCTAATGATTAATTGAGTCTCAT
AATCGATATGTAATCAAGACTATTttaaaatcttgagtatcgattgaTCA
TTGGTTGGATTCGActttgcaccgagtaggctttttgattgaaacatgaa
aaaaatccgtagtggaacacatgcAAGTGTCTAGtacgaagaagaacaaa
ttagttgCAAAAGGATGGAGCGTTTGTCGTCActtgcgcggcaagttaca
cactcgttatttgttaatatCATCGGACGATAGGCAGTTAGATGGCGGGc
cttctctaattctcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019984-exon-sc0000345-1491911889:300418..300911 | TCONS_00019984-exon-sc0000345-1491911889:300418..300911 | Clytia hemisphaerica | exon |
| TCONS_00019984-exon-sc0000345-1510915933:300418..300911 | TCONS_00019984-exon-sc0000345-1510915933:300418..300911 | Clytia hemisphaerica | exon |
| TCONS_00019984-exon-sc0000345-1575043694:300418..300911 | TCONS_00019984-exon-sc0000345-1575043694:300418..300911 | Clytia hemisphaerica | exon |
| TCONS_00019984-exon-sc0000345-1491911889:303081..303532 | TCONS_00019984-exon-sc0000345-1491911889:303081..303532 | Clytia hemisphaerica | exon |
| TCONS_00019984-exon-sc0000345-1510915933:303081..303532 | TCONS_00019984-exon-sc0000345-1510915933:303081..303532 | Clytia hemisphaerica | exon |
| TCONS_00019984-exon-sc0000345-1575043694:303081..303532 | TCONS_00019984-exon-sc0000345-1575043694:303081..303532 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:300418..303532 + |
Blast
The following BLAST results are available for this feature:
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