TCONS_00019963 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019963
Unique NameTCONS_00019963
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019963 ID=TCONS_00019963|Name=TCONS_00019963|organism=Clytia hemisphaerica|type=transcript|length=399bp
CACAACAAAGATACAAGAGGAAGTACTCGCAGCAATCAAGAGCTTAGCTG
TTCGCGAAGAAAACACCATGGTTGCAAGGGTGACACTCAATGAGATGAAG
CAGGACCGCGACGAACCAATAAGGTCCTTTGCTGCACGTATCATAGGACA
AGCTGGCATATGCAAATACATCCTCACTTGCCAATGCGAGCGTGAAATCA
ACTGCAGTGACCGTATACTGCGTGATGTAGTTGTTCAAGGACTATATGAC
AATGATATCCAACTTGATCTGCTCAGTGACCAAAATCAAGACATGTCACT
TGAGGAAGTCCTTCAATTCGTTGAAAAGAAAGAAGCTGGTCGGCGCTCAG
CCAACAAACTGCATGACTCCCAAGCAGCTGGAATCAGCCAATACAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00019963-protein

>TCONS_00019963-protein ID=TCONS_00019963-protein|Name=TCONS_00019963-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
TTKIQEEVLAAIKSLAVREENTMVARVTLNEMKQDRDEPIRSFAARIIGQ
AGICKYILTCQCEREINCSDRILRDVVVQGLYDNDIQLDLLSDQNQDMSL
EEVLQFVEKKEAGRRSANKLHDSQAAGISQYK
Run BLAST on NCBI

transcript from alignment at sc0000339:220574..220972

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019963 ID=TCONS_00019963|Name=TCONS_00019963|organism=Clytia hemisphaerica|type=transcript|length=399bp|location=Sequence derived from alignment at sc0000339:220574..220972 (Clytia hemisphaerica)
CTTTTGTATTGGCTGATTCCAGCTGCTTGGGAGTCATGCAGTTTGTTGGC
TGAGCGCCGACCAGCTTCTTTCTTTTCAACGAATTGAAGGACTTCCTCAA
GTGACATGTCTTGATTTTGGTCACTGAGCAGATCAAGTTGGATATCATTG
TCATATAGTCCTTGAACAACTACATCACGCAGTATACGGTCACTGCAGTT
GATTTCACGCTCGCATTGGCAAGTGAGGATGTATTTGCATATGCCAGCTT
GTCCTATGATACGTGCAGCAAAGGACCTTATTGGTTCGTCGCGGTCCTGC
TTCATCTCATTGAGTGTCACCCTTGCAACCATGGTGTTTTCTTCGCGAAC
AGCTAAGCTCTTGATTGCTGCGAGTACTTCCTCTTGTATCTTTGTTGTG

Coding sequence (CDS) from alignment at sc0000339:220574..220972

>TCONS_00019963 ID=TCONS_00019963|Name=TCONS_00019963|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000339:220574..220972 (Clytia hemisphaerica)
TTTGTATTGGCTGATTCCAGCTGCTTGGGAGTCATGCAGTTTGTTGGCTG
AGCGCCGACCAGCTTCTTTCTTTTCAACGAATTGAAGGACTTCCTCAAGT
GACATGTCTTGATTTTGGTCACTGAGCAGATCAAGTTGGATATCATTGTC
ATATAGTCCTTGAACAACTACATCACGCAGTATACGGTCACTGCAGTTGA
TTTCACGCTCGCATTGGCAAGTGAGGATGTATTTGCATATGCCAGCTTGT
CCTATGATACGTGCAGCAAAGGACCTTATTGGTTCGTCGCGGTCCTGCTT
CATCTCATTGAGTGTCACCCTTGCAACCATGGTGTTTTCTTCGCGAACAG
CTAAGCTCTTGATTGCTGCGAGTACTTCCTCTTGTATCTTTGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011210XLOC_011210Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019963-proteinTCONS_00019963-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019963-exon-sc0000339-1491911889:220574..220972TCONS_00019963-exon-sc0000339-1491911889:220574..220972Clytia hemisphaericaexon
TCONS_00019963-exon-sc0000339-1510915933:220574..220972TCONS_00019963-exon-sc0000339-1510915933:220574..220972Clytia hemisphaericaexon
TCONS_00019963-exon-sc0000339-1575043694:220574..220972TCONS_00019963-exon-sc0000339-1575043694:220574..220972Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:220574..220972 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2407	1.2746	2.32562	1.86157	0.503618	0.397966	1.20032	1.12373	0.314699	0.584708	0.75671	0.746147	0.869294	1.03174	0.318086	1.02406	0	0.431021	0	0.623125	0.180536	0.528356	0	0	0.200478	1.07353	0.512074	0.27325	0.4145	0.42231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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