TCONS_00019074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019074
Unique NameTCONS_00019074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019074 ID=TCONS_00019074|Name=TCONS_00019074|organism=Clytia hemisphaerica|type=transcript|length=784bp
ttttttcggaaaaaaataaagtcaataaaaagtcaaaaatattcgaaaag
taaaatgaaaatttacaaaGACAAAAGGAAGTGAAATGTTCATTGTCTTA
CGGAATCTAGGGTCAAAACGTCGAAGTGCCTTTCCTCAGTGTATCTTTCC
TTTTTGAATATAGTTTTAATCAAATCTGAGATAATAAACATTTGATGATA
TTTGATATAAAGATaaaatttaaatattgaaattttagaatagggcatgt
tttttcttatttataatTGGAGAAACTACATTATACTTACAAAACGAACA
CAGAAAAATAAATAGTTGCACAAGGGTTGACAAAGAATTACATGCAAGTT
ATTGGGTAAGCTTTAACGCAATGGTTGATTAACCGTccatcataaaaaag
aattttacaAACTAGTCGATATGTATGACTTTCCTTACAGCTTGGGAATG
GACGATAAGAGATACCTTGATTTCCATAACGTTTCATAAACCATTTAGTG
ACTTGTCGAAATGCTGGAGACTGCGCCCATAATCTTTTTTGAAGATCCAT
ATTGAATTGGTTGGAGCTTTGACCATCTGATACTATTTCTTTCAACATTT
CACTGTCTTTAAGTTCCTCAATGTCTTCCAGTAGTGATTTCATGTCATCT
TGATTACTGGAGGATTTTCCTTCAGACAATACATATCCTTGGATGACATA
TGAAGTCAAAAATACCAATGCAATGAATAGCCTGTTTTGAATTTCCATGT
TCTTGATGAGTTGATGTAGAAAGACTTGTacaaa
Run BLAST on NCBI

protein sequence of TCONS_00019074-protein

>TCONS_00019074-protein ID=TCONS_00019074-protein|Name=TCONS_00019074-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
FVQVFLHQLIKNMEIQNRLFIALVFLTSYVIQGYVLSEGKSSSNQDDMKS
LLEDIEELKDSEMLKEIVSDGQSSNQFNMDLQKRLWAQSPAFRQVTKWFM
KRYGNQGISYRPFPSCKESHTYRLVCKILFYDGRLINHCVKAYPITCM
Run BLAST on NCBI

transcript from alignment at sc0000317:266988..267771

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019074 ID=TCONS_00019074|Name=TCONS_00019074|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at sc0000317:266988..267771 (Clytia hemisphaerica)
tttgtACAAGTCTTTCTACATCAACTCATCAAGAACATGGAAATTCAAAA
CAGGCTATTCATTGCATTGGTATTTTTGACTTCATATGTCATCCAAGGAT
ATGTATTGTCTGAAGGAAAATCCTCCAGTAATCAAGATGACATGAAATCA
CTACTGGAAGACATTGAGGAACTTAAAGACAGTGAAATGTTGAAAGAAAT
AGTATCAGATGGTCAAAGCTCCAACCAATTCAATATGGATCTTCAAAAAA
GATTATGGGCGCAGTCTCCAGCATTTCGACAAGTCACTAAATGGTTTATG
AAACGTTATGGAAATCAAGGTATCTCTTATCGTCCATTCCCAAGCTGTAA
GGAAAGTCATACATATCGACTAGTTtgtaaaattcttttttatgatggAC
GGTTAATCAACCATTGCGTTAAAGCTTACCCAATAACTTGCATGTAATTC
TTTGTCAACCCTTGTGCAACTATTTATTTTTCTGTGTTCGTTTTGTAAGT
ATAATGTAGTTTCTCCAattataaataagaaaaaacatgccctattctaa
aatttcaatatttaaattttATCTTTATATCAAATATCATCAAATGTTTA
TTATCTCAGATTTGATTAAAACTATATTCAAAAAGGAAAGATACACTGAG
GAAAGGCACTTCGACGTTTTGACCCTAGATTCCGTAAGACAATGAACATT
TCACTTCCTTTTGTCtttgtaaattttcattttacttttcgaatattttt
gactttttattgactttatttttttccgaaaaaa

Coding sequence (CDS) from alignment at sc0000317:266988..267771

>TCONS_00019074 ID=TCONS_00019074|Name=TCONS_00019074|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0000317:266988..267771 (Clytia hemisphaerica)
tttgtACAAGTCTTTCTACATCAACTCATCAAGAACATGGAAATTCAAAA
CAGGCTATTCATTGCATTGGTATTTTTGACTTCATATGTCATCCAAGGAT
ATGTATTGTCTGAAGGAAAATCCTCCAGTAATCAAGATGACATGAAATCA
CTACTGGAAGACATTGAGGAACTTAAAGACAGTGAAATGTTGAAAGAAAT
AGTATCAGATGGTCAAAGCTCCAACCAATTCAATATGGATCTTCAAAAAA
GATTATGGGCGCAGTCTCCAGCATTTCGACAAGTCACTAAATGGTTTATG
AAACGTTATGGAAATCAAGGTATCTCTTATCGTCCATTCCCAAGCTGTAA
GGAAAGTCATACATATCGACTAGTTtgtaaaattcttttttatgatggAC
GGTTAATCAACCATTGCGTTAAAGCTTACCCAATAACTTGCATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010689XLOC_010689Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019074-exon-sc0000317-1491911889:266988..267771TCONS_00019074-exon-sc0000317-1491911889:266988..267771Clytia hemisphaericaexon
TCONS_00019074-exon-sc0000317-1510915933:266988..267771TCONS_00019074-exon-sc0000317-1510915933:266988..267771Clytia hemisphaericaexon
TCONS_00019074-exon-sc0000317-1575043694:266988..267771TCONS_00019074-exon-sc0000317-1575043694:266988..267771Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019074-proteinTCONS_00019074-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:266988..267771 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0617004	0.0601676	0	0	0	0	0	0.0742637	0.207975	0.0644027	0.187532	0.0410921	0.041035	0.80969	0.490498	0.150394	1.85273	0.854545	0.327945	1.50995	1.0738	1.3094	0.919678	2.44405	0.861185	0.354733	0.592225	1.17379	4.17744	1.74432
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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