TCONS_00018957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018957
Unique NameTCONS_00018957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length675

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018957 ID=TCONS_00018957|Name=TCONS_00018957|organism=Clytia hemisphaerica|type=transcript|length=675bp
TACTTTGCAACATTCCTTGCACTCCTATTGGCAACATTATACATTATATG
GCGAATCAGAATTGCTCAGATTGTGGGTATCAAAGCGTTGCCACATTCTT
TCCCTGTCATTGGGTCGTGTCTCCATGTGGAGACAGACGGCCCTAAATTT
TATAAACAAATCAGAAAGTGGATCCCTGAGAATGGTtatttgtttgttgt
ttggTTGTGCTGGTATCCTTTCATATGGATAGGCAAGGTTGAGATGGCTG
AAGCTGTCCTTAAAAGTCAAGAGATTCTATCCAAATCAATTGTTTATGAT
TGTATACAACCATGGCTTAGCACTGGTCTGTTAACTTCTACACATCAAAA
ATGGAAAACAAGGCGTCGAGCGATAACACCTTCattccatttcaatattt
taaatgaatttcaaaatatctttgTGAAACAAGCTGAGGTTTTAGCACAT
AAATTGAAATCGTATGCCGATAAAGCGATTCCGTTCGACGTACAAATACC
CGTCAGCCTTGCCACTTTGGATACCATATGTGAGACAGCTATGGGTGTTA
CTGTCAATGCTCAAAAAGATGCTGATTCGGAATATGTGAATGCTATCAAT
GCTGGCAACAAACTTTTGCAAGAACGGCAAAAATATCCCTGGTTATGGCC
TGATATGGTCTATTGGAATACTGGA
Run BLAST on NCBI

protein sequence of TCONS_00018957-protein

>TCONS_00018957-protein ID=TCONS_00018957-protein|Name=TCONS_00018957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
YFATFLALLLATLYIIWRIRIAQIVGIKALPHSFPVIGSCLHVETDGPKF
YKQIRKWIPENGYLFVVWLCWYPFIWIGKVEMAEAVLKSQEILSKSIVYD
CIQPWLSTGLLTSTHQKWKTRRRAITPSFHFNILNEFQNIFVKQAEVLAH
KLKSYADKAIPFDVQIPVSLATLDTICETAMGVTVNAQKDADSEYVNAIN
AGNKLLQERQKYPWLWPDMVYWNTG
Run BLAST on NCBI

transcript from alignment at sc0000313:176955..177629

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018957 ID=TCONS_00018957|Name=TCONS_00018957|organism=Clytia hemisphaerica|type=transcript|length=675bp|location=Sequence derived from alignment at sc0000313:176955..177629 (Clytia hemisphaerica)
TCCAGTATTCCAATAGACCATATCAGGCCATAACCAGGGATATTTTTGCC
GTTCTTGCAAAAGTTTGTTGCCAGCATTGATAGCATTCACATATTCCGAA
TCAGCATCTTTTTGAGCATTGACAGTAACACCCATAGCTGTCTCACATAT
GGTATCCAAAGTGGCAAGGCTGACGGGTATTTGTACGTCGAACGGAATCG
CTTTATCGGCATACGATTTCAATTTATGTGCTAAAACCTCAGCTTGTTTC
AcaaagatattttgaaattcatttaaaatattgaaatggaatGAAGGTGT
TATCGCTCGACGCCTTGTTTTCCATTTTTGATGTGTAGAAGTTAACAGAC
CAGTGCTAAGCCATGGTTGTATACAATCATAAACAATTGATTTGGATAGA
ATCTCTTGACTTTTAAGGACAGCTTCAGCCATCTCAACCTTGCCTATCCA
TATGAAAGGATACCAGCACAAccaaacaacaaacaaataACCATTCTCAG
GGATCCACTTTCTGATTTGTTTATAAAATTTAGGGCCGTCTGTCTCCACA
TGGAGACACGACCCAATGACAGGGAAAGAATGTGGCAACGCTTTGATACC
CACAATCTGAGCAATTCTGATTCGCCATATAATGTATAATGTTGCCAATA
GGAGTGCAAGGAATGTTGCAAAGTA

Coding sequence (CDS) from alignment at sc0000313:176955..177629

>TCONS_00018957 ID=TCONS_00018957|Name=TCONS_00018957|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at sc0000313:176955..177629 (Clytia hemisphaerica)
TCCAGTATTCCAATAGACCATATCAGGCCATAACCAGGGATATTTTTGCC
GTTCTTGCAAAAGTTTGTTGCCAGCATTGATAGCATTCACATATTCCGAA
TCAGCATCTTTTTGAGCATTGACAGTAACACCCATAGCTGTCTCACATAT
GGTATCCAAAGTGGCAAGGCTGACGGGTATTTGTACGTCGAACGGAATCG
CTTTATCGGCATACGATTTCAATTTATGTGCTAAAACCTCAGCTTGTTTC
AcaaagatattttgaaattcatttaaaatattgaaatggaatGAAGGTGT
TATCGCTCGACGCCTTGTTTTCCATTTTTGATGTGTAGAAGTTAACAGAC
CAGTGCTAAGCCATGGTTGTATACAATCATAAACAATTGATTTGGATAGA
ATCTCTTGACTTTTAAGGACAGCTTCAGCCATCTCAACCTTGCCTATCCA
TATGAAAGGATACCAGCACAAccaaacaacaaacaaataACCATTCTCAG
GGATCCACTTTCTGATTTGTTTATAAAATTTAGGGCCGTCTGTCTCCACA
TGGAGACACGACCCAATGACAGGGAAAGAATGTGGCAACGCTTTGATACC
CACAATCTGAGCAATTCTGATTCGCCATATAATGTATAATGTTGCCAATA
GGAGTGCAAGGAATGTTGCAAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010627XLOC_010627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018957-exon-sc0000313-1491911889:176955..177629TCONS_00018957-exon-sc0000313-1491911889:176955..177629Clytia hemisphaericaexon
TCONS_00018957-exon-sc0000313-1510915933:176955..177629TCONS_00018957-exon-sc0000313-1510915933:176955..177629Clytia hemisphaericaexon
TCONS_00018957-exon-sc0000313-1575043694:176955..177629TCONS_00018957-exon-sc0000313-1575043694:176955..177629Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018957-proteinTCONS_00018957-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:176955..177629 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.60906	0.0742412	0.603408	0.421672	4.10676	4.38104	22.7082	22.5421	14.3067	15.8934	14.8094	11.2562	16.2533	18.93	10.1592	13.6395	2.00033	2.57749	16.5908	13.6348	1.03053	0.969408	1.30938	1.50786	4.33222	5.03362	1.67028	1.33693	0.253503	0.0860933
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002402Cyt_P450_E_grp-II
IPR001128Cyt_P450
Vocabulary: Molecular Function
TermDefinition
GO:0004497monooxygenase activity
GO:0020037heme binding
GO:0005506iron ion binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
[Close]
BLAST of TCONS_00018957 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.730e-41
Identity = 75/201 (37.31%), Postives = 123/201 (61.19%), Query Frame = 1 
Query:   67 QIVGIKALPHSFPVIGSCLHVETDGPKFYKQIRKWIPENGY--LFVVWLCWYPFIWIGKVEMAEAVLKSQEILSKSIVYDCIQPWLSTGLLTSTHQKWKTRRRAITPSFHFNILNEFQNIFVKQAEVLAHKLKSYADKAIPFDVQIPVSLATLDTICETAMGVTVNAQKDADSEYVNAINAGNKLLQERQKYPWLWPDMVY 663
            Q+  I  +  ++P++G  L ++ DG +F++QI ++  E  +  L  +W+   P + +   E  E +L S + + KS +Y  ++PWL  GLLTST  KW++RR+ +TP+FHF IL +F +I  +QA +L  KL+ + ++   F+    ++L  LD ICETAMG  + AQ + DSEYV A+   ++++  R K PWLW D+ Y
Sbjct:   46 QMRPIPTVARAYPLVGHALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKHINQE-AFNCFFYITLCALDIICETAMGKNIGAQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLWY 245
The following BLAST results are available for this feature:
BLAST of TCONS_00018957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP4V21.730e-4137.31Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
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