TCONS_00018688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018688
Unique NameTCONS_00018688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018688 ID=TCONS_00018688|Name=TCONS_00018688|organism=Clytia hemisphaerica|type=transcript|length=2547bp
ACAAATAAAAAGTCAGCACAATCATGTATAGACTGCTGAGTAAAATCGAA
TATGTTTATTAATCAAAAGGTCTTTTTTACTCATCTATGATATTATACAT
TAAACACCTCTAATACGAAATCCGTTTGGTTTATCTTGCATTAGAGATGA
AAAGAAGAGAAACTTGTGTTATTCATGTCAACATAGAATTGAGATAATTT
GACCGTCATTCTTGCGGTTGTAATTCATAGAAACTCTCATTCGTCATTTA
GACTGTCAAGATCAGTTTATACAGTAATGATCTAAGATCTAGAGAGAGgg
agatatttgagacatttTATGGAGATATCCTTCTAAGTACTCAGGATGAC
AAGGTATCTGGTAAGGAAGCAAATAATCGGTTTGGCTTTGGTTGTTTTTG
TTTATGCTGGCTTATTGCAAGGTCAAGTTGTGGACATCAAAACGAAGAGC
TTTGGATGTTATCTCGTCGGTGACAGTTCCACAATTACTGTCAACGGTAC
TGGATACCTCTTCATGCAAGATGGTATCAGTGTGCTCACTATACAACATA
CCTCCCCTGATACACCGCCTCTCATTGAGATCACGACAATCGGACCTGCA
TCGTTTCACGACGACAGCGTTTTATCACAACTGAACTCAACCCTGACATC
AAGGCTGACAAAGGAAGGGACAGTGCTGGTGATTGCCTTACAATCAACTT
GTTTCGATGAATATGCTGGCTGGTTGAAACTGGTTCAATCTGTCCCTAAT
CTTGATATCGGGAAAAATGATTGGGACGACGACATATCAGCAGGTGTTAT
CATTGGTTGTTATAAGAAATGTCCGGTAAAAGTGTCCGGAGAAACGATCC
CTGTGACGGAGCTGGGTGATGATGACACAGAGGTTGATATCGATGTTGTT
CTCGACCTTAATCATCTGGTCGAGCCAGCGTTACCATCGCACAAGAAGAA
ATCATCGCCCAAACTTATTCTCTACATCATTCCCGtcattttcatcttcc
ttttcaTTGTCGTTTTCCTCCTCTACTTCTGTTGCTATAAGAAACGACGA
CGACGCCGATTGACTAAACGTCGAGAAGCAGAGGATTATGGGGGCGAATC
GACCAATCAACAGCAAGAACTGAACCAATGTCTCCTCAATGAACTTCAAG
AAGAACAAGTAACCATGGAAGATAAACTAGTACCCAAGCTGCAAAAGCTT
TTACATAAAGATGGGGATGGGAAACAAAATGAGTACACTCATCATCCAAA
CACCAAACGAGAAGATGAAAATCATTTATATGAACCAGTCACCGAAGACC
AAAGCTCAAAACCTCTCTTAAATGCACCACAACAGAAACCTGAAGCAGAA
GTCATTTACAAAACTCCTTCAGGGGCGTCCAATCGTAGCGGTTTCATTCG
TCTACCAACTCAAAACCAGCCTCCTAAACGATACCAAGATTTGCATACCA
GAGAAATCCATGACAGCCCTGGAGATTCTAACAACACAACTGATGATAAT
TATGAGAACTATGAACCACCTAAAGATTCTCCAATATACAAAGTTCCTCA
AACAGCTATCTACAAAACCCCATCAGTCACCACAAGCAACGAGGACAATA
CACCAATCTATAAATCACCATCAGTGACCACAAGCAACGAGGACAATACA
CCAATCTATAAATCACCACCAGTCACCACAAGCAACGAGGACAATACACC
AATCTATAAATCACCATCCACAGGACATTACCAAGCACCTACCAAACATT
CAGAACCAAACAACAATGCACCAAAGACATTACCATCAAACATGAAATTA
CAAGCATCACCACCAACAACGAACATTGAAAAACAATCACCGGGAACCTC
ACGAAAGATGTTCCAACAGTGTGGTGACACAGAACCACAAAATGATGACG
GTTTCGCTTCTTATATACAACTTAATGACGAAGAGAACACGATATATAAA
ACACCATCAAATGCAAAGAAACACGAGCCTCCTTCTGGCAACCCTGGTGC
ACCTGCCAGAGATGATGGTGATGATGAAACTGATGACCATGATTATGAAC
CTCCTGTTGATCGGTCCAACCAGATCTATCAGAATGTCAATATTAAGTGA
TTCCGATTTCATATACTTGGCATTTTTGGCCATTTACTATCGATCATACC
AAATACACTAGAATGTAAATATTGATTAACTTAAACTTTTTGGTACATTA
GCTCAAAGCAAAGCCAATAACACCATTAACGTCCTCGAGGAATTCAATAT
CAATGATATTTTATAATGCTGGAAAGCATGAAAATAATTGTTTTATCAAT
CTAATAAATGCAATATTCAAAAATTCAGGTCTCAGAATATATTTACCAGG
CTTTTGAGTCAAACCCAAGCTAAGAATGACTTTAACTCGATAATTTTGGA
ACAATAAATTATTAGTATCGTTACACCTTCCCCAATGAACCCTCTTTGTA
ATTATAGTACAGTAATTAGGAATATTATAATTGTACATTTATGATGAAAT
AGAATTTGAAACGCCaaaatctatattataatacgcttaaatcggaa
Run BLAST on NCBI

transcript from alignment at sc0000304:214134..220541-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018688 ID=TCONS_00018688|Name=TCONS_00018688|organism=Clytia hemisphaerica|type=transcript|length=6408bp|location=Sequence derived from alignment at sc0000304:214134..220541- (Clytia hemisphaerica)
ACAAATAAAAAGTCAGCACAATCATGTATAGACTGCTGAGTAAAATCGAA
TATGTTTATTAATCAAAAGGTCTTTTTTACTCATCTATGATATTATACAT
TAAACACCTCTAATACGAAATCCGTTTGGTTTATCTTGCATTAGAGATGA
AAAGAAGAGAAACTTGTGTTATTCATGTCAACATAGAATTGAGATAATTT
GACCGTCATTCTTGCGGTTGTAATTCATAGAAACTCTCATTCGTCATTTA
GACTGTCAAGATCAGTTTATACAGTAATGATCTAAGATCTAGAGAGAGGG
AGATATTTGAGACATTTTATGGAGATATCCTTCTAAGTACTCAGGATGAC
AAGGTATCTGGTAAGGAAGCAAATAATCGGTTTGGCTTTGGTTGTTTTTG
TTTATGCTGGCTTATTGCAAGGTCAAGTTGGTAAGTTGATTTGATTTGAT
TAGTTACTTATGATAAAGTCATATTTTTTCTTTATCAGCATCCGTGTTGT
ATTCCCTATGATAGACCTGGAGAGTTTAATTGACGTCTTTTTCAGTTGCC
AATCTTTGAGATTTTTGCCAACTGTCATACCACATACATTCTATCCACGG
TGAGGAAAACGGAGTTGCCAACAAGGGTTACAGAGTGACTACTGATTCAC
CAAATTGTAGAGTCATACTATATATCTTTTCCTTCCAGTGGACATCAAAA
CGAAGAGCTTTGGATGTTATCTCGTCGGTGACAGTTCCACAATTACTGTC
AACGGTACTGGATACCTCTTCATGCAAGATGGTATCAGTGTGCTCACTAT
ACAACATACCTCCCCTGATACACCGCCTCTCATTGAGATCACGACAATCG
GACCTGCATCGTTTCACGACGACAGCGTTTTATCACAACTGAACTCAACC
CTGACATCAAGGTTACTGTTTTATTATTCAATCTTCTAGCCGACTTAGAG
CACCAAGGAAACCAAGAACCTTAAATATCAATGAAGGAAGACATTGAATT
TTTTGGGCTGAATCTTTAATTATCCCCCCTCAGCCCCTTGAAATTGTGAC
TCAAAATTTGAAGCCCCACCCATTAATAGCAAAGGATTTCCATTCCCACT
GGTACTTAACATCATAAATTTTCCCCCAGTTGGAAAAAAGTCATTTCAAA
AACACTTAGACAGGGGCGCTACAGTTAAAAAGTCTGATAAAACGTAAATA
CTCCACGCAAGCTTACCTCAATACATCATTTCTTCCAATAGGCTGACAAA
GGAAGGGACAGTGCTGGTGATTGCCTTACAATCAACTTGTTTCGATGAAT
ATGCTGGCTGGTTGAAACTGGTTCAATCTGTCCCTAATCTTGATATCGGG
AAAAATGATTGGGACGACGACATATCAGCAGGTTGGTTAGATTCCTAATG
ATTGGTCAATTTTGGTGCTGTATTCATGCTAGCTACCTTGTTCTCTCCTA
AAGTCAGGAACATCCCTGTTTCACTAGCTGGAGGATTTGATTAATTTAGT
GAAATGGTCTGCATGAAAGTTCATTCCAAACAAAAGTTTTCTAGCATGGC
CTTGTTGGGAGTTTTTTTAAACACTGACTATTATAAGGTATATTGCACTT
TAATCATCGTTACACTTTATATACCCACATCACCTTAGGTGTTATCATTG
GTTGTTATAAGAAATGTCCGGANGAGTTTAATTGACGTCTTTTTCAGTTG
CCAATCTTTGAGATTTTTGCCAACTGTCATACCACATACATTCTATCCAC
GGTGAGGAAAACGGAGTTGCCAGCAAGGGTTACAGAGTGACTACTGATTC
ACCAAATTTGTAGAGTCATATACTATATATCTTTTCCTTCCAGTGGACAT
CAAAACGAAGAGTTTTGGATGTTATCTCGTCGGTGACAGTTCCACAATTA
CTGTCAACGGTACTGGATACCTCTTCATGCAAGATGGTATCAGTGTGCTC
ACTATACAACATACCTCCCCTGATACACCGCCTCTCATTGAGATCACGAC
AATCGGACCTGCATCGTTTCACGACGACAGCGTTTTATCACAACTGAACT
CAACCCTGACATCAAGGTTACTGTTTTATTATTCAATCTTCTAGCCGACT
TAGAGCACCAAGGAAACCAAGAACCTTAAATATCAATGAAGGAAGACATT
GAATTTTTTGGGCTGAATCTTTAATTATCCCCCCTCAGCCCCTTGAAATT
GTGACTCAAAATTTGAAGCCCCACCCATTAATAGCAAAGGATTTCCATTC
CCACTGGTACTTAACATCATAAATTTTCCCCCAGTTGGAAAAAAGTCATT
TCAAAAACACTTAGACAGGGGCGCTACAGTTAAAAAGTCTGATAAAACGT
AAATACTCCACGCAAGCTTACCTCAATACATCATTTCTTCCAATAGGCTG
ACAAAGGAAGGGACAGTGCTGGTGATTGCCTTACAATCAACTTGTTTCGA
TGAATATGCTGGCTGGTTGAAACTGGTTCAATCTGTCCCTAATCTTGATA
TCGGGAAAAATGATTGGGACGATGACATATCAGCAGGTTGGTTAGATTCC
TAATGATTGGTCAATTTTGGTGTTGTATTCATGCTAGCTACCTTGTTCTC
TCCTCTAAAGTCAGGAACATCCCTGTTTCACTAGCTGGAGGATTTGATTA
ATTTAGTGAAATGGTCTGCATGAAAGTTCATTCCAAACAAGAGTTTTCTA
GCATGGCCTTGTTGGGAGTTTTTTTTAAAACTGACTTTTATAAGGTATAT
TGCACTTTAACCATCGTTACACTTTATATACCCACATCACCTTAGGTGTT
ATCATTGGTTGTTATAAGAAATGTCCGGTAAAAGTGTCCGGAGAAACGAT
CCCTGTGACGGAGCTGGGTGATGATGACACAGAGGTTGATATCGATGTTG
TTCTCGACCTTAATCGTAAGTTCTTTGCTTTTGGTTATAATTTTCAACCT
TTCTACAGGACAAATACATTAACTTGCAAGCGGCATAGACCTATTTAGGA
GTCTCGTTACCCTTTAGAATGAAAAGGTATATCTGGCATTTTGTTGTCGA
TATTACTTGGCTAACTCGTGATCTATAGAGCTATAGAACTTTGTGTTTTC
AACGTTTTCAATGTCGTAATTCAATAAAGGAAAAAAGTTAGAAAATTAGT
CATTTGGGAAAAGTGCTTTAATTGGTGCTAGACACTTTTGATCAATTGAA
TCATTTAGAAATTGTGCTGACAGAATGAAATACGACTAATACCTTAATTG
ATTGTTCATCATTGAATTCTCAATTTTTGAAAGTGAAAGTGAAACTTACT
TATGAAATATTGACTTAACCAGAACAATAACTGTCAAAATTACAATTGAT
CAGTAATGCGTATGATTACTACTTTGCATAATATAGCAAGGGGGTAATAT
GAAATAACCGTTCTATTTCTATGAACATCGTAAGAATTCAGATTATCAAG
GAGCACTTCATCGCCTAAGATATTCAAGAGCGCAACAAGTTCTAATCCAG
ATCTCCAAAAATAAATAGATGCAAACTACCATACTGCAATCGTATGTAAA
AAAAATAAGTTTCATCCTTCTATTAAAACAGAGAATAAAGTAGGCTATGG
TAATGAGATCAAAATACTGAAACCTACCATTCTCGATTACAGATCTGGTC
GAGCCAGCGTTACCATCGCACAAGAAGAAATCATCGCCCAAACTTATTCT
CTACATCATTCCCGTCATTTTCATCTTCCTTTTCATTGTCGTTTTCCTCC
TCTACTTCTGTTGCTATAAGAAACGACGACGACGCCGATTGACTAAACGT
CGAGAAGCAGAGGATTATGGGGGCGAATCGACCAATCAACAGCAAGAACT
GAACCAATGTCTCCTCAATGAACTTCAAGAAGAACAAGTAACCATGGAAG
ATAAACTAGTACCCAAGCTGCAAAAGCTTTTACATAAAGATGGGGATGGG
AAACAAAATGAGTACACTCATCATCCAAACACCAAACGAGAAGATGAAAA
TCATTTATATGAACCAGTCACCGAAGACCAAAGCTCAAAACCTCTCTTAA
ATGCACCACAACAGAAACCTGAAGCAGAAGTCATTTACAAAACTCCTTCA
GGGGCGTCCAATCGTAGCGGTTTCATTCGTCTACCAACTCAAAACCAGCC
TCCTAAACGATACCAAGATTTGCATACCAGAGAAATCCATGACAGCCCTG
GAGATTCTAACAACACAACTGATGATAATTATGAGAACTATGAACCACCT
AAAGATTCTCCAATATACAAAGTTCCTCAAACAGCTATCTACAAAACCCC
ATCAGTCACCACAAGCAACGAGGACAATACACCAATCTATAAATCACCAT
CAGTGACCACAAGCAACGAGGACAATACACCAATCTATAAATCACCACCA
GTCACCACAAGCAACGAGGACAATACACCAATCTATAAATCACCATCCAC
AGGACATTACCAAGCACCTACCAAACATTCAGAACCAAACAACAATGCAC
CAAAGACATTACCATCAAACATGAAATTACAAGCATCACCACCAACAACG
AACATTGAAAAACAATCACCGGGAACCTCACGAAAGATGTTCCAACAGTG
TGGTGACACAGAACCACAAAATGATGACGGTTTCGCTTCTTATATACAAC
TTAATGACGAAGAGAACACGATATATAAAACACCATCAAATGCAAAGAAA
CACGAGCCTCCTTCTGGCAACCCTGGTGCACCTGCCAGAGATGATGGTGA
TGATGAAACTGATGACCATGATTATGAACCTCCTGTTGATCGGTCCAACC
AGATCTATCAGAATGTCAATATTAAGTGATTCCGATTTCATATACTTGGC
ATTTTTGGCCATTTACTATCGATCATACCAAATACACTAGAATGTAAATA
TTGATTAACTTAAACTTTTTGGTACATTAGCTCAAAGCAAAGCCAATAAC
ACCATTAACGTCCTCGAGGAATTCAATATCAATGATATTTTATAATGCTG
GAAAGCATGAAAATAATTGTTTTATCAATCTAATAAATGCAATATTCAAA
AATTCAGGTCTCAGAATATATTTACCAGGCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCAA
CAGAAGGCGAGTTAGTTGCCGCGCGAGTTACGTCACGCACTCCACCTCAG
CGCACAACGAACGGTGTTTCAGTAATTATCAATAATTATAAGAATGTCTT
ATGTGCTTAACTTCAGTAAACGNAAACCAGCCTCCTAAACGATACCAAGA
TTTGCATACCAGAGAAATCCATGACAGCCCTGGAGATTCTAACAACACAA
CTGATGATAATTATGAGAACTATGAACCACCTAAAGATTCTCCAATATAC
AAAGTTCCTCAAACAGCTATCTACAAAACCCCATCAGTCACCACAAGCAA
CGAGGACAATACACCAATCTATAAATCACCATCAGTGACCACAAGCAACG
AGGACAATACACCAATCTATAAATCACCACCAGTCACCACAAGCAACGAG
GACAATACACCAATCTATAAATCACCATCCACAGGACATTACCAAGCACC
TACCAAACATTCAGAACCAAACAACAATGCACCAAAGACATTACCATCAA
ACATGAAATTACAAGCATCACCACCAACAACGAACATTGAAAAACAATCA
CCGGGAACCTCACGAAAGATGTTCCAACAGTGTGGTGACACAGAACCACA
AAATGATGACGGTTTCGCTTCTTATATACAACTTAATGACGAAGAGAACA
CGATATATAAAACACCATCAAATGCAAAGAAACACGAGCCTCCTTCTGGC
AACCCTGGTGCACCTGCCAGAGATGATGGTGATGATGAAACTGATGACCA
TGATTATGAACCTCCTGTTGATCGGTCCAACCAGATCTATCAGAATGTCA
ATATTAAGTGATTCCGATTTCATATACTTGGCATTTTTGGCCATTTACTA
TCGATCATACCAAATACACTAGAATGTAAATATTGATTAACTTAAACTTT
TTGGTACATTAGCTCAAAGCAAAGCCAATAACACCATTAACGTCCTCGAG
GAATTCAATATCAATGATATTTTGTAATGCTGGAAAGCATGAAAATAATT
GTTTTATCAATCTAATAAATGCAATATTCAAAAATTCAGGTCTCAGAATA
TATTTAACAGGCTTTTGAGTCAAACCCAAGCTAAGAATGACTTTAACTCG
ATAATTTTGGAACAATAAATTATTAGTATCGTTACACCTTCCCCAATGAA
CCCTCTTTGTAATTATAGTACAGTAATTAGGAATATTATAATTGTACATT
TATGATGAAATAGAATTTGAAACGCCAAAATCTATATTATAATACGCTTA
AATCGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010452XLOC_010452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018688-exon-sc0000304-1575043694:220112..220541TCONS_00018688-exon-sc0000304-1575043694:220112..220541Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1575043694:219631..219853TCONS_00018688-exon-sc0000304-1575043694:219631..219853Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1575043694:219161..219300TCONS_00018688-exon-sc0000304-1575043694:219161..219300Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1575043694:217627..217746TCONS_00018688-exon-sc0000304-1575043694:217627..217746Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1575043694:215464..216899TCONS_00018688-exon-sc0000304-1575043694:215464..216899Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1575043694:214134..214331TCONS_00018688-exon-sc0000304-1575043694:214134..214331Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1510915933:220112..220541TCONS_00018688-exon-sc0000304-1510915933:220112..220541Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1510915933:219631..219853TCONS_00018688-exon-sc0000304-1510915933:219631..219853Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1510915933:219161..219300TCONS_00018688-exon-sc0000304-1510915933:219161..219300Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1510915933:217627..217746TCONS_00018688-exon-sc0000304-1510915933:217627..217746Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1510915933:215464..216899TCONS_00018688-exon-sc0000304-1510915933:215464..216899Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1510915933:214134..214331TCONS_00018688-exon-sc0000304-1510915933:214134..214331Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1491911889:220112..220541TCONS_00018688-exon-sc0000304-1491911889:220112..220541Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1491911889:219631..219853TCONS_00018688-exon-sc0000304-1491911889:219631..219853Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1491911889:219161..219300TCONS_00018688-exon-sc0000304-1491911889:219161..219300Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1491911889:217627..217746TCONS_00018688-exon-sc0000304-1491911889:217627..217746Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1491911889:215464..216899TCONS_00018688-exon-sc0000304-1491911889:215464..216899Clytia hemisphaericaexon
TCONS_00018688-exon-sc0000304-1491911889:214134..214331TCONS_00018688-exon-sc0000304-1491911889:214134..214331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:214134..220541 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.614563	4.59682e-06	0.188994	0.112061	1.7891	0.561349	5.25691	8.98598	2.5209	1.74517	0.559646	1.51591	5.82692	6.0127	0.478266	1.4795	2.90859	5.9473	12.1249	11.9975	3.95641	5.39029	4.97285	4.45274	8.39859	10.2096	27.1558	21.367	2.1446	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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