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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018093 ID=TCONS_00018093|Name=TCONS_00018093|organism=Clytia hemisphaerica|type=transcript|length=939bp
TCAAGATTTTACTGTCACTGACTGCTGCTGCCATTCATAAAGAGTTTTGG
ACCATCTATCATCCATATACATCAAGACTGTTATCGTACATCATATCCAG
ACTGATTGGTTCCCACTGATTGATTGATACCCAATCTTAAGggttCATCA
AGTCCACATCATTCAGTGTATAGCTACTCTGGTCAATCTGGATTTACATT
AGATAGCTTGGTTATTAAAAGCTAACTTGGATTTACACAGTTAACTCATA
TTTAAAGGATTCCCCTCTATTCACTTGGCTCACCAGAATACACTTGGAAT
ACTTTGTTTTACTCAGTTTATTTGGTTTTACACAGCTCaattgatattac
tcggctcacttgatattactcggctcacttgatattactcggctcacttg
atattactcggcctacttgatattactcggctcacttgatattactcgtc
TCACTTGATactactcggctcacttgatactactcagctaacttgatatt
actcggctaacttgatattactcggctaacttgatattactcggctaact
tgatattactcagctaacttgacactactcagctaacttgatattactcg
gctaacttgacagtactcggctcacttgattcTACATAGCTCACTTGATT
CAATTAACTTGTGTTTCATTGGCTAACCcggaatttatgattttttttga
catttcattgTTTACCACTTACTTGCTCAGCTTTTTTAACTTGTTAAAAA
ACAATAGgctattaaaataaatatacatTATATTTGAAACTGAcgtattt
ataatttttttacattcccCTTTTCAAAACATGATATCAATCGAAGCATA
CCGTAGTTCAATCGGCAACTTTAACGGGACAAGGCAATATGATCTCCGTA
GTCAACTCTTCTATTTCAAGCAACGGGGTTTCACGATTA Run BLAST on NCBI transcript from alignment at sc0000287:277531..280069+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018093 ID=TCONS_00018093|Name=TCONS_00018093|organism=Clytia hemisphaerica|type=transcript|length=2539bp|location=Sequence derived from alignment at sc0000287:277531..280069+ (Clytia hemisphaerica)
TCAAGATTTTACTGTCACTGACTGCTGCTGCCATTCATAAAGGTAAATCT
CTATTGTGTGCTCCAGTAGTATCATAAGAATATTGGCCTTTTGCAACAAG
ACACTCTGCGAAATACAAAAAATCTGCAAGGTTAATTCTCAAATTAAGGG
CTAGGTAGGAGGGGGAAAGAACCAGGCAATTCCACTTATACAAAAAGTGC
AGCGTCGGTCACTATTGGGTCGTTTGGCGTctgcttttattttgaaaaca
gctATTCTATCGATTACGTCGGTCGGTCGATACTCGAAACCAATGATCTC
AGTCGAACGGAACCAATGATCGAACCAGATCGAACTCAATCAAACGATTA
AAATTGATTGGCCTTTTGCAACAAGACACTCTGCGAAATACAAAAACTCT
GCAAGGTTAATTCTCAAATTGAGGGCTAGGTAGGAGGGGTAAGAATCAGG
CAATTCCACTTACAAAAAGTGCAGCGCAGATCGTTTGGCGTCTGCTTTAC
GAAAATCTCAGTCGAACGAATCAAATATTACCTAGAATTCGGCCGTTGGA
TTGAGATTTgtttgcgttcgacaatcgaatttcaattccgttcgattgag
atcgtctggtcaaaattgagaaaaaaattttacttggGGCagcaaaaact
tgaaattcactAATTTAAGTTCGAACCAAAATTGATTCTTGTCgtcaatc
attaaaaaaaggtaatAGAAAGGGAAGATTTGCCtggccattcgccaaaa
taagttcttgtcaaaatttaaaatatattcaTTCACATTTTTGCTGACTT
CAGTtgtttgccaaaataagttcttttTGTATAGTTTTGGACCATCTATC
ATCCATATACATCAAGACTGTTATCGTACATCATATCCAGACTGATTGGT
TCCCACTGATTGATTGATACCCAATCTTAAGGTGAgtttgaatttcattt
tcttcaggATTTATCATTAAAAGGCTTGGTAACCTAATGACTTAAGTGAA
AAATCAAGTTGTGTATTACCATTTACTGCGAAATCTTTGTGAGGCTGGGA
GAAACGTGGTAAAGAGAAGGCCATTGTTGGTTATAGTCTAGAGAaggatt
tctttttttgattcgtaattttttgtcctttttgaaacttttaaagggat
aacgagataaaatatgaaaattggctaaaagATTCTTTCCATGGTCCTTA
GTAAGCcctccaaatattttttgagaaataacaTTCCAGAGTCAAGATAT
GACAATTAGAAATCTCCGTTTTTCCTACCTCACACGTACctcacgttgaa
attctattgttttccagcagaaattaaaaattacaaacctAAATATTTCG
ACTTTGAAAAACAAGTAGCCTGTAAAATTTGAAGGTTTTGCTAAGGACTA
TGGAAGGAATCTTTGggctgaattttattttttatctggttatcccttta
agtTAGCTGCCCTGGAAATGAGATTTTCACTTGTATTTGTAAAACATCAT
GATCAGATTTCATCTCGGGTTCTTTATGTTGTGCGAAAAAATTGTGACCT
ATAAATACTTGCATGcctcaattttcaacaaaaagcaaGTGTCTTCCTAA
CGGGTGGACATAATTAGGAAAGTCTTCCAGAACTTGGAACAAGCTTACGC
TGCACTTGAGCTTTACGATTTATGAACATGGTAGTATACTCCAGTTGAAC
GCGATTGTTTGGgtaatttcgtttttgtttttatttttcagggttCATCA
AGTCCACATCATTCAGTGTATAGCTACTCTGGTCAATCTGGATTTACATT
AGATAGCTTGGTTATTAAAAGCTAACTTGGATTTACACAGTTAACTCATA
TTTAAAGGATTCCCCTCTATTCACTTGGCTCACCAGAATACACTTGGAAT
ACTTTGTTTTACTCAGTTTATTTGGTTTTACACAGCTCaattgatattac
tcggctcacttgatattactcggctcacttgatattactcggctcacttg
atattactcggcctacttgatattactcggctcacttgatattactcgtc
TCACTTGATactactcggctcacttgatactactcagctaacttgatatt
actcggctaacttgatattactcggctaacttgatattactcggctaact
tgatattactcagctaacttgacactactcagctaacttgatattactcg
gctaacttgacagtactcggctcacttgattcTACATAGCTCACTTGATT
CAATTAACTTGTGTTTCATTGGCTAACCcggaatttatgattttttttga
catttcattgTTTACCACTTACTTGCTCAGCTTTTTTAACTTGTTAAAAA
ACAATAGgctattaaaataaatatacatTATATTTGAAACTGAcgtattt
ataatttttttacattcccCTTTTCAAAACATGATATCAATCGAAGCATA
CCGTAGTTCAATCGGCAACTTTAACGGGACAAGGCAATATGATCTCCGTA
GTCAACTCTTCTATTTCAAGCAACGGGGTTTCACGATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018093-exon-sc0000287-1491911889:277531..277572 | TCONS_00018093-exon-sc0000287-1491911889:277531..277572 | Clytia hemisphaerica | exon |
| TCONS_00018093-exon-sc0000287-1510915933:277531..277572 | TCONS_00018093-exon-sc0000287-1510915933:277531..277572 | Clytia hemisphaerica | exon |
| TCONS_00018093-exon-sc0000287-1575043694:277531..277572 | TCONS_00018093-exon-sc0000287-1575043694:277531..277572 | Clytia hemisphaerica | exon |
| TCONS_00018093-exon-sc0000287-1491911889:278363..278461 | TCONS_00018093-exon-sc0000287-1491911889:278363..278461 | Clytia hemisphaerica | exon |
| TCONS_00018093-exon-sc0000287-1510915933:278363..278461 | TCONS_00018093-exon-sc0000287-1510915933:278363..278461 | Clytia hemisphaerica | exon |
| TCONS_00018093-exon-sc0000287-1575043694:278363..278461 | TCONS_00018093-exon-sc0000287-1575043694:278363..278461 | Clytia hemisphaerica | exon |
| TCONS_00018093-exon-sc0000287-1491911889:279272..280069 | TCONS_00018093-exon-sc0000287-1491911889:279272..280069 | Clytia hemisphaerica | exon |
| TCONS_00018093-exon-sc0000287-1510915933:279272..280069 | TCONS_00018093-exon-sc0000287-1510915933:279272..280069 | Clytia hemisphaerica | exon |
| TCONS_00018093-exon-sc0000287-1575043694:279272..280069 | TCONS_00018093-exon-sc0000287-1575043694:279272..280069 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000287 | supercontig | sc0000287:277531..280069 + |
Blast
The following BLAST results are available for this feature:
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