TCONS_00017997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017997
Unique NameTCONS_00017997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1700

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017997 ID=TCONS_00017997|Name=TCONS_00017997|organism=Clytia hemisphaerica|type=transcript|length=1700bp
aaaaagcgtcaTATAGAATGAAGGACTAAAACctcttatattttttttaa
gtaGAGTCAACGATAGAATGTTCTCAAATTTCTTGTTTGCACAAAGCGGG
AGAGAAACAAGCTTATTATTCCTTTGTTTATAAAGGACGTCTTCTCGTAT
AATGAATGTCATTTACGGTTTATGAGGTGAAAGTGGAAATTTTGAGCGAA
GTAGGAATCAAGCATAGACGATTGTTCAAGATGGCTGCCGCTTCTACATC
ATCTGAAAAACTCAATTCTTGTGTAAAAACAGATGTATTTTTATCTCACG
ATTGGGGTGAAGATGGTATAACTAATCACAAAAAGGTCGAGAAAATCAAC
GAGGCGATCAAAGGATTGGGATACGTGACTTGGTTCGACAATGAACGAAT
GGTTGGTAACGTACGAGAACAAATGGCAAACGGGATCGAAAACACCAAAT
GTTTTATTGCTTTCATTACAAAACGTTATCACAACAAAGTGGTCTTCGGT
ACTGATAGAGATAATTGTCGAGTTGAATTCGATTTTGCCAGCATGAAAGT
CCCAATGGTAGCTGTACTTCTTGATCCATCGATGAAAAACCCTCATGATT
GGAAAGGGAATCTAGGATTAACACTAGCAACCAAATTATATATTGACTTG
TCTGGTGACATCAATGATGAAAAGTATTTGACGAATCAACTCAAACTTCT
GGAAAAAGATTTGACGTCTAAAAGAATCTTCCCAAATAAATTAGAAGAGA
CAACGAATGAATTGAAAGTTTTAGATATTCGAAAGGAAGAGAACCCTTTG
GGGAAGAACGCTGTTGAAAATCAAGAAACAATACCGGATGAAAGAATTGA
GGAAATGAAGGGGAAAGCAGATAATCTACTGAAAAATGGGGAGTGGGCCG
AAGCTATTCCTCTTTATGAAGATATTATTAAGAAACAAACTACCACTTTG
GGTGAAAACCACGAGGCTACTCTGACTACCAGATTCTTGTTGGCTCATTG
TTATTACGATCAAAAAGATTACCAAAAAGCTAAACAAATTCTCCAGGATG
TAGGTGAGAAACAAAGTTCCACTTTGGGTGAAAACCACGACGATACTGTT
CGAAGCAAGGGACTCTTAAAAGCTTGCAATGAATTGATTAACTAGTAAAA
TACCAATACATTTTGACTTCATATTTTTAGTTTCATAGTTTTATTGTCGT
TTTTTGAATTATCGAACGTGCACACCGCATCGGGTTCAACTAGAGCAAAA
ATGCCAGctaaatccgaccatttttgaataCTATAGGCTGCCCAAAGTAT
TTTTGACAGGCAGGCAGAAATTCTCAgatttctaactcaactgaagtgaa
aaaattgaagtTAAGAACATAATTTCCATTTACTTTTAATCATACATTCT
GTCATCATTTTTGTGGTAACATTTCATAGATATATTTCAACCGCTAGCGA
ATTAGTTAACATTTCATAGATATATTTCAATCGCTAGCGAATTAGTTAAC
ATTTCATAGATATATTTCAATCACTAGCGAATTAGTTAACATTTCATAGA
TATATTTCAATCGCTAGCGAATTAGTTAACATTTCATAGATATATTTCAA
TCGCTAGCGAATTAATTAACATTTCATAGATATATTTCAATCGCTAGCGA
ATTAGTTAAGGTCTTAATATTTCtagatcaatattttttgtttttgcgtC
Run BLAST on NCBI

protein sequence of TCONS_00017997-protein

>TCONS_00017997-protein ID=TCONS_00017997-protein|Name=TCONS_00017997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MSFTVYEVKVEILSEVGIKHRRLFKMAAASTSSEKLNSCVKTDVFLSHDW
GEDGITNHKKVEKINEAIKGLGYVTWFDNERMVGNVREQMANGIENTKCF
IAFITKRYHNKVVFGTDRDNCRVEFDFASMKVPMVAVLLDPSMKNPHDWK
GNLGLTLATKLYIDLSGDINDEKYLTNQLKLLEKDLTSKRIFPNKLEETT
NELKVLDIRKEENPLGKNAVENQETIPDERIEEMKGKADNLLKNGEWAEA
IPLYEDIIKKQTTTLGENHEATLTTRFLLAHCYYDQKDYQKAKQILQDVG
EKQSSTLGENHDDTVRSKGLLKACNELIN
Run BLAST on NCBI

transcript from alignment at sc0000282:55337..66169-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017997 ID=TCONS_00017997|Name=TCONS_00017997|organism=Clytia hemisphaerica|type=transcript|length=10833bp|location=Sequence derived from alignment at sc0000282:55337..66169- (Clytia hemisphaerica)
AAAAAGCGTCATATAGAATGAAGGACTAAAACCTCTTATATTTTTTTTAA
GTAGAGTCAACGATAGAATGTTCTCAAATTTCTTGTTTGCACAAAGCGGG
AGAGAAACAAGCTTATTATTCCTTTGTTTATAAAGGACGTCTTCTCGTAT
AATGAATGTCATTTACGGTTTATGAGGTGAAAGTGGAAATTTTGAGCGAA
GTAGGAATCAAGCATAGACGATTGTTCAAGATGGCTGCCGCTTCTACATC
ATCTGAAAAACTCAATTCTTGTGTAAAAACAGATGTATTTTTATCTCACG
ATTGGGGTGAAGATGGTATAACTAATCACAAAAAGGTCGAGAAAATCAAC
GAGGCGATCAAAGGATTGGGATACGTGACTTGGTTCGACAATGAACGAAT
GGTTGGTAACGTACGAGAACAAATGGCAAACGGGATCGAAAACACCAAAT
GTTTTATTGCTTTCATTACAAAACGTTATCACAACAAAGTGGTCTTCGGT
ACTGATAGAGATAATTGTCGAGTTGAATTCGATTTTGCCAGCATGAAAGT
CCCAATGGTAGCTGTACTTCTTGATCCATCGATGAAAAACCCTCATGATT
GGAAAGGGAATCTAGGATTAACACTAGCAACCAAATTATATATTGACTTG
TCTGGTGACATCAATGATGAAAAGTATTTGACGAATCAACTCAAACTTCT
GGAAAAAGATTTGACGTCTAAAAGAATCTTCCCAAATAAATTAGAAGAGA
CAACGAATGAATTGAAAGGTAATTTTTTGTCTCGTTTTGTAGAAATTGTA
TCGATAAAGGCCAGCAAAACTAAGTTTTTAAGCTTCATGAAAACTATAAC
CATCAACTAAATTATTTTTCTCCTGATAACTACTTTAACTTTGATTATAA
ACATAGTCGAACGTGCGCATCGCACTTGGGCTCAACTTTGGCAGCTTTAA
ATTATTAATAGGCCAGATTGTGGCCAAACAAACACAAAAAGTATTGCCCA
GGCCCTATAAATATTTCATATTTCACCCAAGGAATAAGTCTGTCAAATTT
GTATTGAATAAAACTTGTATTTTCTTCGTGTAAAATAAGAAATATAACAT
TTTTGAACGCATTTTTAGCCAATCAAAATGCTAATATTTTTCATGTTGGT
TGACGATTACTAAAATTGTTATATACCTGTAGGCAAAAACAGCCACTGAA
TAATTTCTCATACACCGTGTTTAATACAGACTACGGTAGATTCCTTTGTT
CAAATTCAGGACCTGCCTGAATGATAGCAAGATGCGCAATGGTAAAACTT
CAAATTAATTCGCTGGAAGACAGAATCAAGTAAAGCAGGGCCAAATTTAG
AGGTTTTTGGATCACTCGTTGACCAAAAATGGTCAAAAAACGGTCAAAAA
CGGTCACAATCTTAAAATAGTGGATTTTGTCAAATTTTTCCATTTTTTTG
ACTTTTTGGCTTAAAAGTCCGCTGGAAAGACTTACTTTTGATTTTTTTTT
TTTGCTTGACCATGAAGCCCAATCCAATTCCTACGAGTTAGACCAAAAAT
GACAATTTCTAAATCAAACTGGGCATTACATGAGAGCTTCGCCCTCCTAC
ATAGCCCATGTCTGATATAAACGACATTGGCACTTAAAGGGTTAACTTTG
ATTATAAACATACGAGTAAAAGTGTGATAAATAGTTTAACTGGTTAAAAT
TTCGAGCGGCTCATTTAAACATGTCGATTTCATTGTATTCACTTTGATTA
CAAATATATTTGAAATCATTTTCCTCCATTGTCTGTTTATTATTCCGTCA
TTCATTTACAATTTTACGTTTTTATGATAAGGACACTTCTTTCATTCATG
CTCCCGCTATCGATATCTAAAAATATCCGAAATGCGAAATTTTACTAATG
GAAGTATCGAAAGTGCCAAGTATTTTTCTTAATTTTGAAAATTAAAAAAA
TGAGAAATTTCATAAATTTCAAATTCAAAATTGAAAGATCACCTAAATTT
GCAATTCTGTCAAATTTGAAGACAGTTCCTTGTATCAAAAGTGCCAAAGC
AATTATTGATGATTTCAAACTGTAGTTTTTATGCTTTTTTTCATTGCATC
GAAATTTGAAAATTAATTTTATGAACTCAGTTGAAGTATCTGGATGTTAT
GGGGAATTCCCGCTTTGTTCTTGTAGTAATTCCTCAAGCAGAGTTAATGG
GATCATTGATGGGGTCAAAATCATCCTCAACTAAACTGTCCTATGAAAGT
CACATCCTTATCATGTTTGCTTAAAATGGTTTAATAGATAATGTTTTAGT
CAAAAACAGAGCACGAAATGTTACCATAAAGGGTCCTATCTAAAGTTTTA
TTGTTCTGGTATTTAGGGTAGGGCAGAACTTCTAGACGTGTGTCAATTTC
TCAAAGAATACAATTAACCCATGATCACTGGGTATTCAACCAATGAAAGT
ATTGTAAATTCCTTAAATTTCATGGAAAGCTACAACTTACAAAGGACATG
GCGATTAAACATTTGTAAACTACATGGTTTGAACAGTACGGGTTCTGCAG
AAAAATCGCAAAGTGGTCAAGTAAACAGTGAGGGACAGAAACACAATTAA
ACTTCCAAAAATAAAAAGAAAACTTTAAGAAACTATCAAAGATTTAGCTT
GGATTAAAAATAAATCATTACCTTCAAAATTTCAAAATCGTAAAAAGATC
TCAAATTTCATTTAAAAAAATTTCAAAACTTAGAAAAATACTTGGTACTT
TCGATACTTCCATTTTTTCGGTATCCGATTTTTATTGTCGAATATCTGTT
TTATACAAAATTATTATACTCAAGTTAACACCCCAGTAACAAATATTACG
CTTACAGTTTTAGATATTCGAAAGGAAGAGAACCCTTTGGGGAAGAACGC
TGTTGAAAATCAAGAAACAATACCGGATGAAAGAATTGAGGAAATGAAGG
GGAAAGCAGATAATCTACTGAAAAATGGGGAGTGGGCCGAAGCTATTCCT
CTTTATGAAGATATTATTAAGAAACAAACTACCACTTTGGGTGAAAACCA
CGAGGCTACTCTGACTACCAGATCCTTTTTGGCTTTTTGTTATCACGAAC
AAAAAGATTACCAAAAAGCTAAACAAATTCTCCAGGATGTAGGTGAGAAA
CAAAGTTCCACTTTGGGTGAAAACCACGAGGCTACTCTAAATACCAGATT
CTTGTTGGCTGGTTGTTATTACCAACTAAATGATTACCAAAAAGCTATAC
CAATTTTCCAGGATGTAGGTGAGAAACAAAGTTCCACTTTGGGTGAAAAC
CACGAGGCTACTCTAAATACCAGATTCTTGTTGGCTGGTTGTTATTACCA
ACTAAATGATTACCAAAAAGCTATACCAATTTTCCAGGATGTAGGTGAGG
AACAAAGTTCCACTTTGGGTGAAAACCACGAGGCTACTCTAAATACCAGA
TTCTTGTTGGCTGGTTGTTATTACCAACTAAATGATTACCAAAAAGCTAT
ACCAATTTTCCAGGATGTAGGTGAGGAACAAAGTTCCACTTTGGGTGAAA
ACCACGAGGCTACTCTAAATACCAGATTCTTGTTGGCTGGTTGTTATTAC
CAACTAAATGATTACCAAAAAGCTATACCAATTTTCCAGGATGTAGGTGA
GGAACAAAGTTCCACTTTGGGTGAAAACCACGAGGCTACTCTAAATACCA
GATTCTTGTTGGCTGGTTGTTATTACCAACTAAATGATTACCAAAAAGCT
ATACCAATTTTCCAGGATGTAGGTGAGGAACAAAGTTCCACTTTGGGTGA
AAACCACGAGGCTACTCTAAATACCAGATTCTTGTTGGCTGGTTGTTATT
ACCAACTAAATGATTACCAAAAAGCTATACCAATTTTCCAGGATGTAGGT
GAGGAACAAAGTTCCACTTTGGGTGAAAACCACGAGGCTACTCTAAATAC
CAGATTCTTGTTGGCTGGTTGTTATTACCAACTAAATGATTACCAAAAAG
CTAAACAAATTCTCCAGGATGTAGGTGAGAAACAAAGTTCCACTTTGGGT
GAAAACCACGAGGCTACTCTAAATACCAGATTCTTGTTGGCTCATTGTTA
TCTATATACTAAAAGTCTAATTTTCTATGAGCCGTGGGGTGGCCATTATG
GATTTTTTTTCCAAGTTTCTTTTTAAATCGAGCTCCGAGCGGGAAAACAG
TACAGTGTTCTTTTTTCGAGGCGGAGTACGTTTCTTTTGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNACCAACCATCTTAACAAAATGAACAA
AGACCAAAGACCGACCAATGGAAACAATTGAGAGTGGCATATTTTTGCTG
CATGGTAATACATCCAAGTAATTTGGTTGTCTTTGTAGGCGGCAATCACA
AATATGTTCATTTCCACGGCGGACCGACCGACCGACCGACCGACCGACCG
ACCGACCGACTCACTTTTTAGATCGACCGACTCACTTTTTAGATCGACCG
ACCGCCTCACTTTGGAGACCGACCGACTGCCTCACTTTGTAGACCGACCG
ACCGCCTCACTTTGTAGACCGACTCACTTTGTAGACCGACTCACTTTTTA
GACCGACAGACCGCCTCATTTTGTAGACCGACCGACTGCTTCACTTTGTA
GACCGACCAACCGCTGCTTCACTTTGTAGACCGACCGACCGCCTCACTTT
GTAGACGGACCGACCGCCTCACTTTGTAGACCGACTGACCGACTCACTTT
GTAGACCGACCAACCGCTGCTTCACTTTGTAGACCGACCGACCGCCTCAC
TTTGTAGACTGACCGACCGCCTCACTTTGTAGACCGACCGACCGCTTCAC
TTTGTAGACCGACCGCCTCACTTTGTAGACCGACCGACCGCCTCACTTTG
TAGACCGACCGACCGACTCACGTTTTAGACCGACCAACCGACTCACTTTT
TTAGGCCGACTGACCGACTCACGTTTTAGACCGACCGACCGACTCACTTT
TTAGACCGACCGACCGACCGACTCACTTTTTGAACCGACCGACTGACTCA
CGTTTTAGACCGACCGGCCGACTCACATTTTAGACCGACCGACCGACTCA
CATTTTAGACCCAACGAGGACGCAAAATGAAGATATTTGTGATTGCCGCC
TTATACGTTTCTCTTTGATACTTTACTTTGCTTGCGGGCTGTGCTGCGCA
AGAAGAAGCAGCAACAATGAATATTTGGTACGTACAATAGTGTACATTAT
CTGAAACGTATGGTTGAATATCATTGACAATGACTATATATTAGACTTTT
TCCTTATCACAATNAGAAGCAGCAACAATGAATATTTTGATATATTTTCA
TTTTTTACCCTACCAGTTTTTTGCCCTCCCTAAATTCATGTTTTCTGTCT
AAATGATTTTGGCCTTCGAGCTTAGCTTCTTCCTTTTAAAGTATTCAGTT
ATTAATCATTATATGTCTATATAAAAAGTAAAATGGTTTTAATCGGGAGG
GAAAAATTGGGAAAATAAACTTTTTCTAATTTTTGTTCCTTGTGTTTTGT
TTATATCGGGAATCCGCCATTTTTCTTTAAATCCGTTCACATAGCAACGT
GATAGACCGTATATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGGGAAGAGTGAAAATTAGCGTTTTTTTAA
AGAAGTCGTTGCAGTGCAAATCTTTCGCAAATTTAAAAACCCACTTTCCC
GTGGAAATAATTGACGTTTTTTAGCTTTTTGGGACCCTTGGGGCATAAGC
TACCCGTTGACCGCAAAAATTTCAAAATTCGCGAAATTGACCGTTGACAA
CATTAGGGGTAAAGGGACCCAATGACGTCACAGATTTGGGAAAAACTTGA
AGATGCGATATCTCGAGTTTGAAAAGGAGTTGGGAGGTCGGTGACCCCTC
TTTCGATCGAGAATTCTATGGCGAATAAGATGGAAGGGGTTATAAGGCTT
GAAAGTGACTTTGAAATTTGGCTTAAATTTTAGGCGTTTTCAATTGATGA
CGTCATCAAAACAGGAAAAATGCAATAATATTGCCAATATCTCGAGATTG
GAAAGGAGTTAGGAGATGGTTGACCCCTCATCGGATCGGAAATTTAATGG
AGAATAAGTTGGCAGGGGTAAAAGTGGGTATATAGAAACTTTCAAAAGTA
AATGTATTCAAATTGGGGCCATTTTGAGTCCGATGACGTCATCAAAACCT
AGAAAATACAATATCTCGAGTTTGATAAGGATTTAAGCAATGGTTGACCC
CTCATTGGATCGGAAATCATCAAGAGAATCTTTTCAGTCAATGAAGAAAT
AATTTCAGTGGAGTGAAAAGTTTATTACCCTTTCGATGACGTCGCTTAGG
TCCTAAATGACGTCACCAAACATAAAATATGTGATTTTTCAAGCTTCAAT
CATTGATAAGTGGTAATATTTCGTTTTTTCGGCTTAGAATTCAATCTTAT
TACCCTCCCCCACCATCCAAAGGGCTTTTGATGTGTTCAACAACACTCTA
CTCGGCGGGTGCGACGCCGGGTGACGGCTAGTCTATATACTAAAAGTCTA
ATTCTCTATGAGCCGTGGGGGAGCCATTATGGATTTTTGAGATGGGGGTT
CGAGAGCTACGTGACCGATTTTTTGGTTGGATGGATGGATGGGTGGTTGA
AAACGAAAGCGAAAGTGGTCAAGGGAAGAGTGAAAATTAGCGTTTTTTTA
AAGAAGTCGTTGCAGTGCAAATCTTTCGCAAATTTAAAAACCCACTTTCC
CGTGGAAATAATTGACGTTTTTTGTTTTTTTGGGACCCTTGGGGCACAAG
CTACCCGTTCACCGCAAAAATTCCAAAATTCGCGAATTGACCGTTGACAA
CATTAGGGGTAGAGGACCCAATGACGTCACAAATTTGGGAAAAACTTCAA
AATGCGATATCTCGAGTTTGAAAAAGAGTTGGGAGGTCGGTGACCCCTCA
TTGGATCGAGAATTTTATGGAGAATAAGATGGGAGGGTTTATATAGCTTG
AGTATGACTTTAAAATTTGGCTGAAAATTCAGGCGTTTTCAGTTGATGAC
GTCATCAAAATAGAAAAAATGGGATATCTCGAGATTGGAAAGGAGTTTGG
AGGTCATTGACCCCTCATTGGATCGGAAATTTATGGAGAACAAGTTGGGA
GGGATAAGAGTGGGTATATAGAAACTCTCAAAAATAAATGTATTCAAATT
GAGGCATTTTGGGTCCGATGACGTCATCAAAACCTTAAAAATACAATATC
TCGAGTTTGATAAGGATTTAAGCAATGGTTGACCCCTCATTGGATCGGAA
ATCATCAAGAGAATCTTTTGGATGAATGACAAATTGATTTCAGTGAAGTA
AAAAGTTTATTACCCTTTCGATGACGTCACTTAGGGCCAAAATGACGTCA
CCAAACATGAAATATGCGGTTTTCCGAGTTTTGATTAGTGAAAAGTGGTA
ATATTTTGTTCTTTGGGCTTACAATATACAAATCAGATCTTTTTACCTTC
CCGCCGTGCCCCACCATCCAAAGGGCTTTTGATGTGTTCAACAACACTCT
ACTCGGCGGGTGCGACGCCGGGTGACGGCTAGTTACCAACTAAATGATTA
CCAAAAAGCTATACCAATTTTCCAGGATGTAGGTGAGAAACAAAGTTCCA
CTTTGGGTGAAAACCACGAGGCTACTCTAAATACCAGATTCTTGTTGGCT
CATTGTTATTACGATCAAAATGATTACCAAAAAGCTAAACAAATTCTCCA
GGATGTAGGTGAGAAACAAAGTTCCACTTTGGGTGAAAACCACGAGGCTA
CACTGACTACCAGATTCTTGTTGGCTCATTGTTATAACGATCAAAAAGAT
TACCAAAAAGCTAAACAAATTCTCCAGGATGTAGGTGAGAAACAAAGTTC
CACTTTGGGTGAAAACCACGAGGCTACTCTAAATACCAGATTCTTGTTGG
CTGGTTGTTATTACCAACTAAATGATTACCAAAAAGCTATACCAATTTTC
CAGGATGTAGGTGAGAAACAAAGTTCCACTTTGGGTGAAAACCACGAGGC
TACTCTGACTACCAGATTCTTGTTGGCTCATTGTTATTACGATCAAAAAG
ATTACCAAAAAGCTAAACAAATTCTCCAGGATGTAGGTGAGAAACAAAGT
TCCACTTTGGGTGAAAACCACGACGATACTGTTCGAAGCAAGGGACTCTT
AAAAGCTTGCAATGAATTGATTAACTAGTAAAATACCAATACATTTTGAC
TTCATATTTTTAGTTTCATAGTTTTATTGTCGTTTTTTGAATTATCGAAC
GTGCACACCGCATCGGGTTCAACTAGAGCAAAAATGCCAGCTAAATCCGA
CCATTTTTGAATACTATAGGCTGCCCAAAGTATTTTTGACAGGCAGGCAG
AAATTCTCAGATTTCTAACTCAACTGAAGTGAAAAAATTGAAGTTAAGAA
CATAATTTCCATTTACTTTTAATCATACATTCTGTCATCATTTTTGTGGT
AACATTTCATAGATATATTTCAACCGCTAGCGAATTAGTTAACATTTCAT
AGATATATTTCAATCGCTAGCGAATTAGTTAACATTTCATAGATATATTT
CAATCACTAGCGAATTAGTTAACATTTCATAGATATATTTCAATCGCTAG
CGAATTAGTTAACATTTCATAGATATATTTCAATCGCTAGCGAATTAATT
AACATTTCATAGATATATTTCAATCGCTAGCGAATTAGTTAAGGTCTTAA
TATTTCTAGATCAATATTTTTTGTTTTTGCGTC

Coding sequence (CDS) from alignment at sc0000282:55337..66169-

>TCONS_00017997 ID=TCONS_00017997|Name=TCONS_00017997|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at sc0000282:55337..66169- (Clytia hemisphaerica)
GCTACTCTGACTACCAGATTCTTGTTGGCTCATTGTTATTACGATCAAAA
AGATTACCAAAAAGCTAAACAAATTCTCCAGGATGTAGGTGAGAAACAAA
GTTCCACTTTGGGTGAAAACCACGACGATACTGTTCGAAGCAAGGGACTC
TTAAAAGCTTGCAATGAATTGATTAACTAGTTTTAGATATTCGAAAGGAA
GAGAACCCTTTGGGGAAGAACGCTGTTGAAAATCAAGAAACAATACCGGA
TGAAAGAATTGAGGAAATGAAGGGGAAAGCAGATAATCTACTGAAAAATG
GGGAGTGGGCCGAAGCTATTCCTCTTTATGAAGATATTATTAAGAAACAA
ACTACCACTTTGGGTGAAAACCACGAGATGTCATTTACGGTTTATGAGGT
GAAAGTGGAAATTTTGAGCGAAGTAGGAATCAAGCATAGACGATTGTTCA
AGATGGCTGCCGCTTCTACATCATCTGAAAAACTCAATTCTTGTGTAAAA
ACAGATGTATTTTTATCTCACGATTGGGGTGAAGATGGTATAACTAATCA
CAAAAAGGTCGAGAAAATCAACGAGGCGATCAAAGGATTGGGATACGTGA
CTTGGTTCGACAATGAACGAATGGTTGGTAACGTACGAGAACAAATGGCA
AACGGGATCGAAAACACCAAATGTTTTATTGCTTTCATTACAAAACGTTA
TCACAACAAAGTGGTCTTCGGTACTGATAGAGATAATTGTCGAGTTGAAT
TCGATTTTGCCAGCATGAAAGTCCCAATGGTAGCTGTACTTCTTGATCCA
TCGATGAAAAACCCTCATGATTGGAAAGGGAATCTAGGATTAACACTAGC
AACCAAATTATATATTGACTTGTCTGGTGACATCAATGATGAAAAGTATT
TGACGAATCAACTCAAACTTCTGGAAAAAGATTTGACGTCTAAAAGAATC
TTCCCAAATAAATTAGAAGAGACAACGAATGAATTGAAAGGCTACTCTGA
CTACCAGATTCTTGTTGGCTCATTGTTATTACGATCAAAAAGATTACCAA
AAAGCTAAACAAATTCTCCAGGATGTAGGTGAGAAACAAAGTTCCACTTT
GGGTGAAAACCACGACGATACTGTTCGAAGCAAGGGACTCTTAAAAGCTT
GCAATGAATTGATTAACTAGTTTTAGATATTCGAAAGGAAGAGAACCCTT
TGGGGAAGAACGCTGTTGAAAATCAAGAAACAATACCGGATGAAAGAATT
GAGGAAATGAAGGGGAAAGCAGATAATCTACTGAAAAATGGGGAGTGGGC
CGAAGCTATTCCTCTTTATGAAGATATTATTAAGAAACAAACTACCACTT
TGGGTGAAAACCACGAGATGTCATTTACGGTTTATGAGGTGAAAGTGGAA
ATTTTGAGCGAAGTAGGAATCAAGCATAGACGATTGTTCAAGATGGCTGC
CGCTTCTACATCATCTGAAAAACTCAATTCTTGTGTAAAAACAGATGTAT
TTTTATCTCACGATTGGGGTGAAGATGGTATAACTAATCACAAAAAGGTC
GAGAAAATCAACGAGGCGATCAAAGGATTGGGATACGTGACTTGGTTCGA
CAATGAACGAATGGTTGGTAACGTACGAGAACAAATGGCAAACGGGATCG
AAAACACCAAATGTTTTATTGCTTTCATTACAAAACGTTATCACAACAAA
GTGGTCTTCGGTACTGATAGAGATAATTGTCGAGTTGAATTCGATTTTGC
CAGCATGAAAGTCCCAATGGTAGCTGTACTTCTTGATCCATCGATGAAAA
ACCCTCATGATTGGAAAGGGAATCTAGGATTAACACTAGCAACCAAATTA
TATATTGACTTGTCTGGTGACATCAATGATGAAAAGTATTTGACGAATCA
ACTCAAACTTCTGGAAAAAGATTTGACGTCTAAAAGAATCTTCCCAAATA
AATTAGAAGAGACAACGAATGAATTGAAAGGCTACTCTGACTACCAGATT
CTTGTTGGCTCATTGTTATTACGATCAAAAAGATTACCAAAAAGCTAAAC
AAATTCTCCAGGATGTAGGTGAGAAACAAAGTTCCACTTTGGGTGAAAAC
CACGACGATACTGTTCGAAGCAAGGGACTCTTAAAAGCTTGCAATGAATT
GATTAACTAGTTTTAGATATTCGAAAGGAAGAGAACCCTTTGGGGAAGAA
CGCTGTTGAAAATCAAGAAACAATACCGGATGAAAGAATTGAGGAAATGA
AGGGGAAAGCAGATAATCTACTGAAAAATGGGGAGTGGGCCGAAGCTATT
CCTCTTTATGAAGATATTATTAAGAAACAAACTACCACTTTGGGTGAAAA
CCACGAGATGTCATTTACGGTTTATGAGGTGAAAGTGGAAATTTTGAGCG
AAGTAGGAATCAAGCATAGACGATTGTTCAAGATGGCTGCCGCTTCTACA
TCATCTGAAAAACTCAATTCTTGTGTAAAAACAGATGTATTTTTATCTCA
CGATTGGGGTGAAGATGGTATAACTAATCACAAAAAGGTCGAGAAAATCA
ACGAGGCGATCAAAGGATTGGGATACGTGACTTGGTTCGACAATGAACGA
ATGGTTGGTAACGTACGAGAACAAATGGCAAACGGGATCGAAAACACCAA
ATGTTTTATTGCTTTCATTACAAAACGTTATCACAACAAAGTGGTCTTCG
GTACTGATAGAGATAATTGTCGAGTTGAATTCGATTTTGCCAGCATGAAA
GTCCCAATGGTAGCTGTACTTCTTGATCCATCGATGAAAAACCCTCATGA
TTGGAAAGGGAATCTAGGATTAACACTAGCAACCAAATTATATATTGACT
TGTCTGGTGACATCAATGATGAAAAGTATTTGACGAATCAACTCAAACTT
CTGGAAAAAGATTTGACGTCTAAAAGAATCTTCCCAAATAAATTAGAAGA
GACAACGAATGAATTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010087XLOC_010087Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017997-proteinTCONS_00017997-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017997-exon-sc0000282-1575043694:65402..66169TCONS_00017997-exon-sc0000282-1575043694:65402..66169Clytia hemisphaericaexon
TCONS_00017997-exon-sc0000282-1575043694:63116..63312TCONS_00017997-exon-sc0000282-1575043694:63116..63312Clytia hemisphaericaexon
TCONS_00017997-exon-sc0000282-1575043694:55337..56071TCONS_00017997-exon-sc0000282-1575043694:55337..56071Clytia hemisphaericaexon
TCONS_00017997-exon-sc0000282-1510915933:65402..66169TCONS_00017997-exon-sc0000282-1510915933:65402..66169Clytia hemisphaericaexon
TCONS_00017997-exon-sc0000282-1510915933:63116..63312TCONS_00017997-exon-sc0000282-1510915933:63116..63312Clytia hemisphaericaexon
TCONS_00017997-exon-sc0000282-1510915933:55337..56071TCONS_00017997-exon-sc0000282-1510915933:55337..56071Clytia hemisphaericaexon
TCONS_00017997-exon-sc0000282-1491911889:65402..66169TCONS_00017997-exon-sc0000282-1491911889:65402..66169Clytia hemisphaericaexon
TCONS_00017997-exon-sc0000282-1491911889:63116..63312TCONS_00017997-exon-sc0000282-1491911889:63116..63312Clytia hemisphaericaexon
TCONS_00017997-exon-sc0000282-1491911889:55337..56071TCONS_00017997-exon-sc0000282-1491911889:55337..56071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:55337..66169 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.324739	0.372947	0.0517111	0.0899309	2.52834	1.98948	3.30252	2.69227	1.35329	1.04671	1.32876	1.13368	0.79958	0.768114	1.46441	0.974681	1.53395	0.661871	0.149812	2.16874	2.41292	2.28897	0.732966	1.19443	1.17248	0.567101	2.02318	1.48027	1.94867	1.16744
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000157TIR_dom
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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