TCONS_00017752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017752
Unique NameTCONS_00017752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017752 ID=TCONS_00017752|Name=TCONS_00017752|organism=Clytia hemisphaerica|type=transcript|length=1455bp
ttttgattgaTTACATTCTAACGCAATGTCAGCTTAATATTTTTACAGGT
gaacattataaaaaaataaaaaacgaaacaaaaacAGTGCAACAAATGAG
ATTGAAGATTTTATGGGGATTGAAATGGAAGCAACCAAGTTTCTTTGGAT
GTTGTCACCATTACAAAAGATCAATACATCATAAAATCGCACGTGATGAT
AAATTTGTTCCCAAAAGTCACCAACCCTCAGAAGACACTATTAGGACATT
ATCAGACTTTATAAACAGCTCTCGGAGACTTTTTGTTCTGACCGGTGCTG
GATTATCGACGGAGTCCGGCATCAGAGATTACCGATCCGAAGGAGTCGGG
CAGTATTCAATAACTACGGATAGACCTACACAGCATATTGATTTCGTTAA
GAGTCCAAACAAGAGACAACGGTACTGGGCTCGTAATTTTGCCGGATGGC
CCGTCTTCCGTAACTTTCAACCCAATATTAATCATATGGTTATTGCGGAG
ATGGAGAAATACGGAAATGTTCATTGGTTGGTCACGCAGAATGTTGATGG
TTTGCACTATAAAGCTGGATCATCCAAAATAACGGAATTACATGGCTCCA
CTGCACGTGTTGGTTGTTTATCATGTGACTTCGAAATATCACGTGACAAT
CTCCAAAAAATCTTGCTACGTCACAACATCTGGGACGAAGCTAACATTGG
GCGACAATCCCCTGATGCCGACGTCGTAGTGCCAAATCATGCGGTCGaga
atttcaaaatggttgACTGTCCATCATGTGGCGGAGTTTTGAAACCGAAA
GTTGTTTTCTTCGGTGACAATGTAGCAGCGAGTGTCAAAGactttatttt
ccaaaaattagaTGAATCAGATAAAATGTTAGTGGTTGGTTCGTCTCTAC
AAGTGTACTCAAGCTTTCGATTCATCCTTGGAGCTAAGGAAAGGAATATT
CCGATTGCCATTTTGAACATTGGAGAGACTAGAGGAGACAAACATTGCAA
TCTCAAAATCAATGCAAAAGCTGGTGATGTGTTGCCAAGGCTGTTGTTAC
CATGGAAATAATGAAGCTCTTTATTGAgcatttttgattttacattgGAC
TCCGTTTACTAATATGAATGGTTTATCATCCCTTAAATAAATATCTGACA
TACCAGACGAGATTTCTATTCTCATTGTTGTTATCGGTAGAAAAGTATTT
TCCCAGGTTTTAAAGAAccaaaacctccgttttgggagCCACCTCCGTTT
TgagggccatatactgtatgcTTGGACCATTCGGTCCAAAATAACAAGTA
ACAAATTTGGAAAttcaatttgattattttttcatcATCATCTCTATATc
cttttaaaggtattttttgtCTATATATTTTATTAACCattcttctattt
tttttccattaaaTGGCTTTTGACgtaaataaattatttaaaatctattt
tgaat
Run BLAST on NCBI

protein sequence of TCONS_00017752-protein

>TCONS_00017752-protein ID=TCONS_00017752-protein|Name=TCONS_00017752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
LIDYILTQCQLNIFTGEHYKKIKNETKTVQQMRLKILWGLKWKQPSFFGC
CHHYKRSIHHKIARDDKFVPKSHQPSEDTIRTLSDFINSSRRLFVLTGAG
LSTESGIRDYRSEGVGQYSITTDRPTQHIDFVKSPNKRQRYWARNFAGWP
VFRNFQPNINHMVIAEMEKYGNVHWLVTQNVDGLHYKAGSSKITELHGST
ARVGCLSCDFEISRDNLQKILLRHNIWDEANIGRQSPDADVVVPNHAVEN
FKMVDCPSCGGVLKPKVVFFGDNVAASVKDFIFQKLDESDKMLVVGSSLQ
VYSSFRFILGAKERNIPIAILNIGETRGDKHCNLKINAKAGDVLPRLLLP
WK
Run BLAST on NCBI

transcript from alignment at sc0000274:357896..360710-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017752 ID=TCONS_00017752|Name=TCONS_00017752|organism=Clytia hemisphaerica|type=transcript|length=2815bp|location=Sequence derived from alignment at sc0000274:357896..360710- (Clytia hemisphaerica)
TTTTGATTGATTACATTCTAACGCAATGTCAGCTTAATATTTTTACAGGT
GAACATTATAAAAAAATAAAAAACGAAACAAAAACAGTGCAACAAATGAG
ATTGAAGATTTTATGGGGATTGAAATGGAAGCAACCAAGTTTCTTTGGAT
GTTGTCACCATTACAAAAGATCAATACATCATAAAATCGCACGTGATGAT
AAATTTGTTCCCAAAAGTCACCAACCCTCAGAAGACACTATTAGGACATT
ATCAGACTTTATAAACAGCTCTCGGAGACTTTTTGTTCTGACCGGTGCTG
GATTATCGACGGAGTCCGGCATCAGAGATTACCGATCCGAAGGAGTCGGG
CAGTATTCAATAACTACGGATAGACCTACACAGCATATTGATTTCGTTAA
GAGTCCAAACAAGAGACAACGGTACTGGGCTCGTAATTTTGCCGGATGGC
CCGTCTTCCGTAACTTTCAACCCAATATTAATCATATGGTTATTGCGGAG
ATGGAGAAATACGGAAATGTTCATTGGTTGGTCACGCAGAATGTTGATGG
TTTGCACTATAAAGCTGGATCATCCAAAATAACGGAATTACATGGCTCCA
CTGCACGGTAAGTGTCAGTATTACAATATTATTATTTTTTTAACGGAAAA
ACCCTCGAACTTTGCTCCCAATTCGGAAAAGCTCGTTTTCTTCTGGTTTC
TTAGAAGAGGGGCCATGTTTTTCAAGCAAGACAGTTGCTTGTCAAAGNTC
CCGTTTTCTCCTGGTTTCTTAGAAGAGGGGCCATGTTTTTCAGGCAAGAC
AGTTGTGTGTCAAAGAATCACTTACTTGACTCGTCAGCAAAGAATGCACC
ACAAAGTTCTTAACAGTTAAAGGGTTTCATGGGAAAATAACCGAACGCTT
TTAAAGGTTTTGTTTTTAAATAAGAGTGATATTAAAGGAAGAAATTTTGG
CGGGAAGAAAATTTGGCGGATTTGGTCAAAATCCGCCAAATTAAGTTCCC
GCCAAATTTAATTTTTTCCGTCATCCGCCAAATTAAATTCCCGCCAAATT
TAAGTTGCTCTATTTATTCCCCCAAATGTGTGCTATTTCAGGCCTTAAAA
TAGGCTTTTCCTTTTATAATGGCGTTTTTTGGACAAAAATGTCCTTCGTC
CGCCAAATTTAATTTTTCAAGTTAACTGCCAAATTAAATTCCCTCTGCAA
AAACTTTTTCGGCAATTTTCCTTTAATGTACAAGCTTTATTAGCGATATT
GAATTGACACGGATGTGGAGCAAGTTTGGTTAGAAAGAGGAAAAGAAAAA
TCATTTTTTGCTTGTGCCAGTACAATATAACAATAGTCAGACACTGTCCT
GATATGAAACACGTGTCTGANTTTTTTGCTTGTGTCAGTACAATATAACA
ATAGGCAGGCACTGTCCTGATATGAAACACGTGTCTGATATGAAACGGGA
ACACTTATGTGAAAAGAAAACCTTTAATGAAGTTGAGAAATTTGCAAAAA
TTTTCAACTCTAAAACTTGAACAAACTAAAAATTTCATTCAAAGAACAAC
TTTACAAGAAAAAGATCTACGGGTGAGAAGACACTCCCCTTCATCCGCAC
ACCATCAGATAGACTATTTTCTGGAAGTTTTACAGGACTTCACCCGGGGG
GGGGGTCACTCGGACATTCCCGTCACCTCGCAAGCCTAGTACCCCAGCTT
TGCAAGGTGACAGGTATGTCCAAGCGAAAAATCGAAAATCGACCCTTATA
AACAAGAAAAATTGGCATTTTTGAGACACTTACAGAAGCCTTTCCCAAAA
TGAGATATTGTTTTTGTACCTATGAAAGACTTTCGAGGGTGTGAAAAAGG
GACTCTTATGGCTCGTACACTTTGCGTAAGTATCCCCCGCCCCCGGACTT
CGTCCAAATTTCCTGGTTTGTGAAATGTGTAAAGACATTTTAATGTTCCT
TATTTTCTATATTCTAGTGTTGGTTGTTTATCATGTGACTTCGAAATATC
ACGTGACAATCTCCAAAAAATCTTGCTACGTCACAACATCTGGGACGAAG
CTAACATTGGGCGACAATCCCCTGATGCCGACGTCGTAGTGCCAAATCAT
GCGGTCGAGAATTTCAAAATGGTTGACTGTCCATCATGTGGCGGAGTTTT
GAAACCGAAAGTTGTTTTCTTCGGTGACAATGTAGCAGCGAGTGTCAAAG
ACTTTATTTTCCAAAAATTAGATGAATCAGATAAAATGTTAGTGGTTGGT
TCGTCTCTACAAGTGTACTCAAGCTTTCGATTCATCCTTGGAGCTAAGGA
AAGGAATATTCCGATTGCCATTTTGAACATTGGAGAGACTAGAGGAGACA
AACATTGCAATCTCAAAATCAATGCAAAAGCTGGTGATGTGTTGCCAAGG
CTGTTGTTACCATGGAAATAATGAAGCTCTTTATTGAGCATTTTTGATTT
TACATTGGACTCCGTTTACTAATATGAATGGTTTATCATCCCTTAAATAA
ATATCTGACATACCAGACGAGATTTCTATTCTCATTGTTGTTATCGGTAG
AAAAGTATTTTCCCAGGTTTTAAAGAACCAAAACCTCCGTTTTGGGAGCC
ACCTCCGTTTTGAGGGCCATATACTGTATGCTTGGACCATTCGGTCCAAA
ATAACAAGTAACAAATTTGGAAATTCAATTTGATTATTTTTTCATCATCA
TCTCTATATCCTTTTAAAGGTATTTTTTGTCTATATATTTTATTAACCAT
TCTTCTATTTTTTTTCCATTAAATGGCTTTTGACGTAAATAAATTATTTA
AAATCTATTTTGAAT

Coding sequence (CDS) from alignment at sc0000274:357896..360710-

>TCONS_00017752 ID=TCONS_00017752|Name=TCONS_00017752|organism=Clytia hemisphaerica|type=CDS|length=2118bp|location=Sequence derived from alignment at sc0000274:357896..360710- (Clytia hemisphaerica)
TGTTGGTTGTTTATCATGTGACTTCGAAATATCACGTGACAATCTCCAAA
AAATCTTGCTACGTCACAACATCTGGGACGAAGCTAACATTGGGCGACAA
TCCCCTGATGCCGACGTCGTAGTGCCAAATCATGCGGTCGAGAATTTCAA
AATGGTTGACTGTCCATCATGTGGCGGAGTTTTGAAACCGAAAGTTGTTT
TCTTCGGTGACAATGTAGCAGCGAGTGTCAAAGACTTTATTTTCCAAAAA
TTAGATGAATCAGATAAAATGTTAGTGGTTGGTTCGTCTCTACAAGTGTA
CTCAAGCTTTCGATTCATCCTTGGAGCTAAGGAAAGGAATATTCCGATTG
CCATTTTGAACATTGGAGAGACTAGAGGAGACAAACATTGCAATCTCAAA
ATCAATGCAAAAGCTGGTGATGTGTTGCCAAGGCTGTTGTTACCATGGAA
ATAATTGATTGATTACATTCTAACGCAATGTCAGCTTAATATTTTTACAG
GTGAACATTATAAAAAAATAAAAAACGAAACAAAAACAGTGCAACAAATG
AGATTGAAGATTTTATGGGGATTGAAATGGAAGCAACCAAGTTTCTTTGG
ATGTTGTCACCATTACAAAAGATCAATACATCATAAAATCGCACGTGATG
ATAAATTTGTTCCCAAAAGTCACCAACCCTCAGAAGACACTATTAGGACA
TTATCAGACTTTATAAACAGCTCTCGGAGACTTTTTGTTCTGACCGGTGC
TGGATTATCGACGGAGTCCGGCATCAGAGATTACCGATCCGAAGGAGTCG
GGCAGTATTCAATAACTACGGATAGACCTACACAGCATATTGATTTCGTT
AAGAGTCCAAACAAGAGACAACGGTACTGGGCTCGTAATTTTGCCGGATG
GCCCGTCTTCCGTAACTTTCAACCCAATATTAATCATATGGTTATTGCGG
AGATGGAGAAATACGGAAATGTTCATTGGTTGGTCACGCAGAATGTTGAT
GGTTTGCACTATAAAGCTGGATCATCCAAAATAACGGAATTACATGGCTC
CACTGCACGTGTTGGTTGTTTATCATGTGACTTCGAAATATCACGTGACA
ATCTCCAAAAAATCTTGCTACGTCACAACATCTGGGACGAAGCTAACATT
GGGCGACAATCCCCTGATGCCGACGTCGTAGTGCCAAATCATGCGGTCGA
GAATTTCAAAATGGTTGACTGTCCATCATGTGGCGGAGTTTTGAAACCGA
AAGTTGTTTTCTTCGGTGACAATGTAGCAGCGAGTGTCAAAGACTTTATT
TTCCAAAAATTAGATGAATCAGATAAAATGTTAGTGGTTGGTTCGTCTCT
ACAAGTGTACTCAAGCTTTCGATTCATCCTTGGAGCTAAGGAAAGGAATA
TTCCGATTGCCATTTTGAACATTGGAGAGACTAGAGGAGACAAACATTGC
AATCTCAAAATCAATGCAAAAGCTGGTGATGTGTTGCCAAGGCTGTTGTT
ACCATGGAAATAATTGATTGATTACATTCTAACGCAATGTCAGCTTAATA
TTTTTACAGGTGAACATTATAAAAAAATAAAAAACGAAACAAAAACAGTG
CAACAAATGAGATTGAAGATTTTATGGGGATTGAAATGGAAGCAACCAAG
TTTCTTTGGATGTTGTCACCATTACAAAAGATCAATACATCATAAAATCG
CACGTGATGATAAATTTGTTCCCAAAAGTCACCAACCCTCAGAAGACACT
ATTAGGACATTATCAGACTTTATAAACAGCTCTCGGAGACTTTTTGTTCT
GACCGGTGCTGGATTATCGACGGAGTCCGGCATCAGAGATTACCGATCCG
AAGGAGTCGGGCAGTATTCAATAACTACGGATAGACCTACACAGCATATT
GATTTCGTTAAGAGTCCAAACAAGAGACAACGGTACTGGGCTCGTAATTT
TGCCGGATGGCCCGTCTTCCGTAACTTTCAACCCAATATTAATCATATGG
TTATTGCGGAGATGGAGAAATACGGAAATGTTCATTGGTTGGTCACGCAG
AATGTTGATGGTTTGCACTATAAAGCTGGATCATCCAAAATAACGGAATT
ACATGGCTCCACTGCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009941XLOC_009941Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017752-proteinTCONS_00017752-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017752-exon-sc0000274-1575043694:360104..360710TCONS_00017752-exon-sc0000274-1575043694:360104..360710Clytia hemisphaericaexon
TCONS_00017752-exon-sc0000274-1575043694:357896..358743TCONS_00017752-exon-sc0000274-1575043694:357896..358743Clytia hemisphaericaexon
TCONS_00017752-exon-sc0000274-1510915933:360104..360710TCONS_00017752-exon-sc0000274-1510915933:360104..360710Clytia hemisphaericaexon
TCONS_00017752-exon-sc0000274-1510915933:357896..358743TCONS_00017752-exon-sc0000274-1510915933:357896..358743Clytia hemisphaericaexon
TCONS_00017752-exon-sc0000274-1491911889:360104..360710TCONS_00017752-exon-sc0000274-1491911889:360104..360710Clytia hemisphaericaexon
TCONS_00017752-exon-sc0000274-1491911889:357896..358743TCONS_00017752-exon-sc0000274-1491911889:357896..358743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:357896..360710 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7595	9.96798	26.9195	32.14	21.1956	17.5986	15.2651	14.668	11.733	9.0647	10.4139	10.2021	6.02187	5.34914	6.53191	8.53661	14.5349	16.9134	4.6007	4.52924	10.2135	9.14445	10.1858	10.596	8.92659	8.15776	7.37904	5.83342	5.75177	6.9549
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003000Sirtuin
IPR029035DHS-like_NAD/FAD-binding_dom
IPR026590Ssirtuin_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0070403NAD+ binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0070403 NAD+ binding
Blast
[Close]
BLAST of TCONS_00017752 vs. Swiss-Prot (Human)
Match: SIR4 (NAD-dependent protein lipoamidase sirtuin-4, mitochondrial OS=Homo sapiens GN=SIRT4 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 5.455e-91
Identity = 143/276 (51.81%), Postives = 179/276 (64.86%), Query Frame = 3 
Query:  204 FVPKSHQPSEDTIRTLSDFINSSRRLFVLTGAGLSTESGIRDYRSEGVGQYSITTDRPTQHIDFVKSPNKRQRYWARNFAGWPVFRNFQPNINHMVIAEMEKYGNVHWLVTQNVDGLHYKAGSSKITELHGSTARVGCLSCDFEISRDNLQKILLRHNIWDEANIGRQSPDADVVVPNHAVENFKMVDCPSCGGVLKPKVVFFGDNVAASVKDFIFQKLDESDKMLVVGSSLQVYSSFRFILGAKERNIPIAILNIGETRGDKHCNLKINAKAGDV 1031
            FVP S     + ++ L  FI  S+RL V+TGAG+STESGI DYRSE VG Y+ T  RP QH DFV+S   RQRYWARNF GWP F + QPN  H  ++  EK G ++WLVTQNVD LH KAGS ++TELHG   RV CL C  +  R  LQ+     N    A     +PD DV +    V +F++  C  CGG LKP VVFFGD V     DF+ +++ E+D +LVVGSSLQVYS +RFIL A E+ +PIAILNIG TR D    LK+N++ G++
Sbjct:   32 FVPASPPLDPEKVKELQRFITLSKRLLVMTGAGISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQFSSHQPNPAHWALSTWEKLGKLYWLVTQNVDALHTKAGSRRLTELHGCMDRVLCLDCGEQTPRGVLQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGHLKPDVVFFGDTVNPDKVDFVHKRVKEADSLLVVGSSLQVYSGYRFILTAWEKKLPIAILNIGPTRSDDLACLKLNSRCGEL 307
The following BLAST results are available for this feature:
BLAST of TCONS_00017752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIR45.455e-9151.81NAD-dependent protein lipoamidase sirtuin-4, mitoc... [more]
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