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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001612 ID=TCONS_00001612|Name=TCONS_00001612|organism=Clytia hemisphaerica|type=transcript|length=935bp
GGAAACCCTCGGTGAGCGTTACAACAATTACCTCGCCACAAAACACAACA
TCGGAAAATGTTTAATGAATTTATCTCATTATCAAGACGCATTACGTATC
TTTAAGGAAATCGAAATCGTTTTTAAAGAAACCTTCGGTGAATGTCACAG
CGATTACCTCGCCACAAAACACACAATCGGACAATGTTTAATGAATTTAT
CTCATTACGAGGACGCATTAAGTATCTTCAAAGAAATCGAACTAGTTTGG
AATGAAACAATAGGCCAAAGAAACAGGAATTACTTGATTGGCAAAATCTA
TATCGGAGAATGCTTGAAGAGAATGAAAGCATTCAACGAAGCGTTACAAA
TTTTTCAATCATCCAAACCGATATTGTCAGAAGTTTTAAGTGACCATCAC
GATCGATACTTGAGAAACGATTTCCACATCGGTCATGTTCTATCAAAGAA
AGGACGTTTTGACGATGCATTGGAAATTCTCGAATCAACACAAACAAAAC
AGATCGAAATATTCGACAAATCCCATCTGGAAGTTTTACAAACGACAAAC
GTTATCGGGCGATGTTTGGCAGAAAAAGGACTTTTTGATAAAGCCCATGA
TACTTTATCACAAACTCTTGAAGATGGTTTACAGGTGTTGGATAAGAAAC
ATCCAATTATTCTCTCCATCAGAATCAATTTGGCACACTGCTTGTTTGGt
atgaaaaagattgaagaagcaAAGAATCACTTGACTGAAGTTGAAGAGAT
ATCTTTGCAACGGTTTGGTGATTATCATTCGATTTATCGTGAAGCTGTCG
AAATGAAAGAACAGCACGAACAGAAACGAAAGCAAAAAGAAGAAGGTGTA
GATGTTTCACCTGTTACTGAAAGGATGCAATCAACAAAGTTGGAATGATT
TCTAGTTGGAGAAGAACTTTGATAAATAACCACAC Run BLAST on NCBI transcript from alignment at sc0000011:881022..882715+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001612 ID=TCONS_00001612|Name=TCONS_00001612|organism=Clytia hemisphaerica|type=transcript|length=1694bp|location=Sequence derived from alignment at sc0000011:881022..882715+ (Clytia hemisphaerica)
GGAAACCCTCGGTGAGCGTTACAACAATTACCTCGCCACAAAACACAACA
TCGGAAAATGTTTAATGAATTTATCTCATTATCAAGACGCATTACGTATC
TTTAAGGAAATCGAAATCGTTTTTAAAGAAACCTTCGGTGAATGTCACAG
CGATTACCTCGCCACAAAACACACAATCGGACAATGTTTAATGAATTTAT
CTCATTACGAGGACGCATTAAGTATCTTCAAAGAAATCGAACTAGTTTGG
AATGAAACAATAGGCCAAAGAAACAGGAATTACTTGATTGGCAAAATCTA
TATCGGAGAATGCTTGAAGAGAATGAAAGCATTCAACGAAGCGTTACAAA
TTTTTCAATCATCCAAACCGATATTGTCAGAAGTTTTAAGTGACCATCAC
GATCGATACTTGAGAAACGATTTCCACATCGGTCATGTTCTATCAAAGAA
AGGACGTTTTGACGATGCATTGGAAATTCTCGAATCAACACAAACAAAAC
AGATCGAAATATTCGACAAATCCCATCTGGAAGTTTTACAAACGACAAAC
GTTATCGGGCGATGTTTGGCAGAAAAAGGACTTTTTGATAAAGCCCATGA
TACTTTATCACAAACTCTTGAAGATGGTTTACAGGTGTTGGATAAGAAAC
ATCCAATTATTCTCTCCATCAGAATCAATTTGGCACACTGCTTGTTTGGt
atgaaaaagattgaagaagcaAAGAATCACTTGACTGAAGTTGAAGAGAT
ATCTTTGCAACGGTTTGGTGATTATCATTCGATTTATCGTGAAGCTGTCG
AAATGAAAGAACAGCACGAACAGAAACGAAAGCAAAAAGAAGAAGGTGTA
GATGTTTCACCTGGTAAGTTCAAACTTTATATTTACATTTATTTTCCTGA
ACTTGGGAAGGACgaaaccaatgaagtaaaagcaTGAAGGGGTAGAAGCA
AATCTGCTAGGTTTGATTGGAAGCCGCTGAATCCTACTAAGTTGCGCGGG
GTTGAATGTCCATggtgaaaatggccaaaaaattaagaatatgctaagaa
tatcaccatcatggaattttgagacgtatgtactaaatgttaaatctagt
gctgaattaggatcctaacctgagaatgctgtaagaatattttaggatga
ttttcccaaaaaagataagaatatccatgatgaaatggatttacaccatt
cttataaaaaaaagcgtgtaatttcaTTGGGCGAAACACGTGTCTACGGA
CAgagattttttagtttttgtcaaATCAGGATTTGATGCTAAGTTTCATT
TGAACCATACGATTTACCAAACCATCTCTTTAAAAAAGAATGTTGAAAAT
CTCTACTTTAAGGCATTGATTCTCACAAGGGCTTTGAAATTAGTGCTAGG
TATCACACAATGGCTTGGGATAAATGCATTATGCCATGAACTTCTCAAAT
ATATAAAGCTGctacttttgaaaatatttcgaaTGTTGAAATTGGTTTAC
TCCCACATTTTGATGTATTTTCAATTTGATCATCATGACAATAtcttttc
gaaaagttttttcatccccaatacatttttaaaaattacaatattaattt
tatttttcgattttatatATAGTTACTGAAAGGATGCAATCAACAAAGTT
GGAATGATTTCTAGTTGGAGAAGAACTTTGATAAATAACCACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001612-exon-sc0000011-1491911889:881022..881884 | TCONS_00001612-exon-sc0000011-1491911889:881022..881884 | Clytia hemisphaerica | exon |
| TCONS_00001612-exon-sc0000011-1510915933:881022..881884 | TCONS_00001612-exon-sc0000011-1510915933:881022..881884 | Clytia hemisphaerica | exon |
| TCONS_00001612-exon-sc0000011-1575043694:881022..881884 | TCONS_00001612-exon-sc0000011-1575043694:881022..881884 | Clytia hemisphaerica | exon |
| TCONS_00001612-exon-sc0000011-1491911889:882644..882715 | TCONS_00001612-exon-sc0000011-1491911889:882644..882715 | Clytia hemisphaerica | exon |
| TCONS_00001612-exon-sc0000011-1510915933:882644..882715 | TCONS_00001612-exon-sc0000011-1510915933:882644..882715 | Clytia hemisphaerica | exon |
| TCONS_00001612-exon-sc0000011-1575043694:882644..882715 | TCONS_00001612-exon-sc0000011-1575043694:882644..882715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:881022..882715 + |
Blast
The following BLAST results are available for this feature:
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