TCONS_00001611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001611
Unique NameTCONS_00001611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001611 ID=TCONS_00001611|Name=TCONS_00001611|organism=Clytia hemisphaerica|type=transcript|length=479bp
GATGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGA
AAATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAG
TATCAAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATC
ACGGAAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTT
TCCCTCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTG
ATTCTTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACA
TCAGCCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTC
ATCTCCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTC
ACCGAAAAAGAGCAAGAGCTTCTCAAGATTATTTATTAAAGATCTTTCTT
GGCGACTTTGAAGGAAGAAAAATAGGtaa
Run BLAST on NCBI

transcript from alignment at sc0000011:837210..839523+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001611 ID=TCONS_00001611|Name=TCONS_00001611|organism=Clytia hemisphaerica|type=transcript|length=2314bp|location=Sequence derived from alignment at sc0000011:837210..839523+ (Clytia hemisphaerica)
GATGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGA
AAATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAG
TATCAAGACTTTCTACGGTATTTAAGGTGAGCTTTTACTGACCTTCTATC
ACTCATTTTGTAAACAGTTATGGTAATGAccgaaaatttaaaacagtcCA
ACATttaattctaaatattttttgagtccGATTAAAAGCAGAGCGGAAAG
ttgctgactctgcagaaaataagaaatatttattctaaaattttgggTTT
CAAAAAAAGTATTGAATTATTAATGAATTCCAGAGTGAGAAGAACAATTG
TGGCTTGGCTATGTTAAATACAactctctttttttattttttttagatcG
ACCAAGCGTCACTATTCATCACGGAAGAGTTCAGCGGACCATCTGAGTTC
CCAGACTCATCAGGAAATTTTCCCTCTCTTGACAACGTTAGGGTCGAAAC
AGTGTACGAAGTAGAAGGTGATTCTTTGACGATTCGTCCAATACCAAGCA
CGCCAAATACGCCAAGCACATCAGCCTATGAAATCCCATCGTCATCTTCA
GATCGACAAGGATCATCCTCATCTCCAGAATTTGGCGCATTTAGAAGATA
CAATTTGCCTGGGTAAGTCTAATATTTTTTAAgctaacattacagaatca
cgACTGGGtactgatttttttatgattttctttttgattttttttcaatg
attgcgttatttttacagatttttacaTTGATTTTTTAACTAATTAGATA
CTTTTGATCATAATCTGAtcataattattttttaaattctttaattggtt
tctatttctttttttgaaatgtttttctgATCATTTAATTAATGGTTCTG
ACTTTTGCAAAAATCTCAGCAAAAGAAGCAAGATTTATGTTGACGGAATT
CACTTCTTTCTTTTAGACCGGCTCACCGAAAAAGAGCAAGAACTTCTCAA
GATTATTTATTGAAGATCTTTCTTGGCgactttgaaggaaaaaaaatagg
taattttaatatttctttttctcttttttattagaatacttgaatttgtt
ttttttttatgttccttaattttttttgtcaattttcagtCCGAGTGTTC
TTATATAAACTATAACTTATATAAActtctaaaatcaaaaagtatacaTT
TTTTCCTTGTTATTATACTTTCCTTGAAATAACGTTTTGCAATATAGATA
GCCAAATCACAGTCAGGTTGGGTTTAAGTTTCAAACATTGtaaatatcat
tgtttttctctGTTTGTACAGTATCAACCAACAGAATGCAACATATTTCT
ATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGCGCAA
TGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGTATCA
TTGAAGACACGGAGGTTACAAGAGGTAATCATATTTTACTTGAAGTTTGA
CCAGATTTGGTGAGGGGTAAATCAACATGAAAAGTTGTgcgatatttttt
gattttttgactttatttctgacttttttatgttttattttactATTTGG
ACTttagattttttgactttttcgcgGAGATGTACTATAATTTAGTAATT
TGAGTAATTTACTCCTCCAGATTCGGTTCCAATTTTTCCTATTATTGTTT
GCTCATCTCTTTTTGAAAGATTATATCGAATTAATTAATGGAATCTTATC
TTTAACACCACGTCTggtaattttttctctaaaagaTCATATTTGCTTCA
TAatcatttcaatatttcttTCAGATTTCACTTTCTGGAGATCGGCTGCC
AGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAACGTC
TACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATAATTG
AAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGATACCT
AATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCAGACT
GATTGAACCAGNTTTTGATCATAATCTGAtcataattattttttaaattc
tttaattggtttctatttctttttttgaaatgtttttctgATCATTTAAT
TAATGGTTCTGACTTTTGCAAAAATCTCAGCAAAAGAAGCAAGATTTATG
TTGACGGAATTCACTTCTTTCTTTTAGACCGGCTCACCGAAAAAGAGCAA
GAGCTTCTCAAGATTATTTATTAAAGATCTTTCTTGGCGACTTTGAAGGA
AGAAAAATAGGtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000839XLOC_000839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001611-exon-sc0000011-1491911889:837210..837335TCONS_00001611-exon-sc0000011-1491911889:837210..837335Clytia hemisphaericaexon
TCONS_00001611-exon-sc0000011-1510915933:837210..837335TCONS_00001611-exon-sc0000011-1510915933:837210..837335Clytia hemisphaericaexon
TCONS_00001611-exon-sc0000011-1575043694:837210..837335TCONS_00001611-exon-sc0000011-1575043694:837210..837335Clytia hemisphaericaexon
TCONS_00001611-exon-sc0000011-1491911889:837606..837871TCONS_00001611-exon-sc0000011-1491911889:837606..837871Clytia hemisphaericaexon
TCONS_00001611-exon-sc0000011-1510915933:837606..837871TCONS_00001611-exon-sc0000011-1510915933:837606..837871Clytia hemisphaericaexon
TCONS_00001611-exon-sc0000011-1575043694:837606..837871TCONS_00001611-exon-sc0000011-1575043694:837606..837871Clytia hemisphaericaexon
TCONS_00001611-exon-sc0000011-1491911889:839437..839523TCONS_00001611-exon-sc0000011-1491911889:839437..839523Clytia hemisphaericaexon
TCONS_00001611-exon-sc0000011-1510915933:839437..839523TCONS_00001611-exon-sc0000011-1510915933:839437..839523Clytia hemisphaericaexon
TCONS_00001611-exon-sc0000011-1575043694:839437..839523TCONS_00001611-exon-sc0000011-1575043694:839437..839523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:837210..839523 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.63462	5.1677	4.24746	4.6854	0.954856	9.52281	0.665624	0.300668	0.158581	0.115462	0.0746127	0	0	0	0	0	0.127044	0	0	0	0	0.125908	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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