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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017424 ID=TCONS_00017424|Name=TCONS_00017424|organism=Clytia hemisphaerica|type=transcript|length=4999bpRun BLAST on NCBI transcript from alignment at sc0000267:399468..444030+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017424 ID=TCONS_00017424|Name=TCONS_00017424|organism=Clytia hemisphaerica|type=transcript|length=44563bp|location=Sequence derived from alignment at sc0000267:399468..444030+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017424 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3) HSP 1 Score: 666.766 bits (1719), Expect = 0.000e+0 Identity = 499/1619 (30.82%), Postives = 725/1619 (44.78%), Query Frame = 3
Query: 231 AFDARVQRLNR------FQERYNNSRSDLIFLVDVSGSVSYNGFQIEKDFITSLLSKISIQPIATRVSIITFGYSVKKEFDYIDYPANRPRDTMNKCFFKVDFARVKHRRGRATYMSGAFKMARELIASAQRRGIKRNNVNTAVILLTDGFYNKGGNPASIARDLQNRNTYDAEIFGVGIGYHLASTLINVVGS--SDNVVTARNFADFSGLATR-----------IRGDQIEKLYQPTSPKNCKKDCDKNAICSCGTLGGRYLCACLPGYEGDGIMGDCHKCRHGTYKPFTAP---DKCRPCPANSITDNIGETHISACKCRPGFKGHPHLGMPCTPVECPPQPKTIQNGKVT--SCGKFYKETCTFTCNKNYHVVNEVATSKKIECLITGFWNQGLPACVATTCQRPVNPPKLTSTCSGEKVGDK--CSFTCAQGYTLIGPNERTCKVDGQWSHSLPHCQVVTCPTVRKIDNVNIEPVSCLTKATNFNDGCAYSCKPGFKFVSGDQKRVCSHDGTW-IG-QELVCKDLTPPTIHCPESIFAETDVSQSYKEITWPEPTIIDNSISGQDDITVTHTPSEITSPHKFPIGVTLINFKATDAVGNFDECTFRVEIIDRELPRFDYC--PTDIKVTSKAGDPSTKVDWRAPEYSDNSGNVKVTFATHPGXXXXXXXXXXXXXKYIVEDKSLNTAECTFVVKLESKQCPKRESPINGALSCRTLPHVGKLCQVQCNDKYTFN-GPLAPYYMCGTTAVWRSSPPHYPSMWPDCTILNTRKGMGQAMRFFYFSGDCATS--KEQIKQNFIAILDRFL----------------------------RYDGGCA-DPANARACEASKVQVSCGKTQDI------------NGRVRRGTD-NDMMIEVEIDVKSN-------EDTKTQEN------AVKQLTNKVTGLKSDNSAAAQQLKRIKVGRDTITLEKVEAVGSITGVCADGQIFGSIKDMKPDGSEFVKKQTCISCVAGSYYSTESNKCEKCPQGTYTENVGLLGCPPCPRXXXXXXXXXXXSKKCKKPCAPGTYSEDGLVPCKICAPGSYQSSYKGKTCDQCPGITTTNGNGTKDITDCRMKCPKGSFSKTGLEPCTVCPVGHFQHENGKKDCIQCPASQSTHGEGAQQKGECA-------------------------------FIDRCVSSPCLNGGQCTNLVSDFQCQCRPGYRGKRCQEEKNECADKPCYGSATCIDKIDGFECVCPSNFHGKFCSDKRPSCTSSHCQNGGTCSEAPEGAVCSCKPGFTGFYCERTVNECERKPCGPGATCVDDHRGFSCICAKGYTGPTCHELTDNCEANNKCLNGGECVNGLDSFTCRCPNGFAGSRCEVNIDDCANNPCRNGAICEDGVASYKCRCAAQFYGPLCQHRYNSNDFDLVFDRQ-LQGYAETQ-FYQDLNSFTASFWLKVKKEMDTGTIMSYSYGNEESFQDNGLVIRDPDSLTLVLFGEEAHLDM-SVTDDRWHHVAVTWSSQSGKYFGYKDG-IEVANGNIKKDQVLPSDGIFILGQEQDEVGRNFSAAEAFNGRLSQFNLWDTVLPDAKLAELASYRCIQ--TAGNVIAWADF 4712
A +RV+RL + R + R +L+FLVD S SV F+ E F+ LLS + P ATRV+I+TF S +DY + R R +KC + RG TY GAF+ A +++ A R N V L+TDG Y+ GG+P IA L++ EIF GI L ++ + ++ +F +F LA R I+ D + Y K+C CD+ C CGT G + C C GY G G+ +C C GTYKP +P C PCP + T G T C CR G++ G C V CP K +NG +C + C C+ + +V S I CL G W+ C TC P +CS ++ K C C +GY L G ++ TC+ + QW P C C T + +V I P +C + F C SC+ GF + C+ G W +G Q VCKD+ P I+CP+ I A+T Q +TW PT DNS + ++V H T P+ FPIG I + ATD GN C F +++ID E P D+C P ++V+ K S W P++SDNSG V +H ++Y D S N C + ++ C +P+NG C T + G C + C + Y F G YY VW+ P Y + WPDC ++ FY + C + ++ + F L + + Y+ G A P A A+++ S D + R++R +D I++ ++ ++ DT EN ++ +TNK+ + + + QL + D+ +LE +A + C G + ++ + C++C G+YY+ E CE C G+Y + G L C CP G T + + CK C GTYS GL C+ C G+YQ + ++C CP T+T G +I+ C + CP+G FS++GL PC CP ++Q GK C+ CP +T G++ EC+ C +PC N G C L + C C GY G +C+ + +EC+ PC + C D + F C CPS + G+ C + C+SS C N G C + G C+C GF G +CE VNEC+ PC A C D GF C C G+ G C + D C + C NG C +G +SF C C GF GS CE+NI++C +NPCRN A C D + SY C+C F G C+ S F+L F+ + GY L++ T +FW+K +M+ GT +SY+ N DN L++ D + L + G E + SV D RWHH+A+TW+S +G + Y DG + + +P G +LGQEQD+ G FS AE+F G +SQ NLWD VL ++ LA+ C + + GNV+AW DF
Sbjct: 56 AAGSRVERLGQAFRRRVRLLRELSERLELVFLVDDSSSVGEVNFRSELMFVRKLLSDFPVVPTATRVAIVTFS-SKNYVVPRVDYISTR-RARQHKCALLLQEIPAISYRGGGTYTKGAFQQAAQILLHA------RENSTKVVFLITDG-YSNGGDPRPIAASLRDSGV---EIFTFGIWQGNIRELNDMASTPKEEHCYLLHSFEEFEALARRALHEDLPSGSFIQDDMVHCSYLCDEGKDC---CDRMGSCKCGTHTGHFECICEKGYYGKGLQYECTACPSGTYKPEGSPGGISSCIPCPDENHTSPPGSTSPEDCVCREGYRAS---GQTCELVHCPAL-KPPENGYFIQNTCNNHFNAACGVRCHPGFDLVG----SSIILCLPNGLWSGSESYCRVRTCPHLRQPKHGHISCSTREMLYKTTCLVACDEGYRLEGSDKLTCQGNSQWDGPEPRCVERHCSTFQMPKDVIISPHNCGKQPAKFGTICYVSCRQGFILSGVKEMLRCTTSGKWNVGVQAAVCKDVEAPQINCPKDIEAKTLEQQDSANVTWQIPTAKDNS---GEKVSV-HVHPAFTPPYLFPIGDVAIVYTATDLSGNQASCIFHIKVIDAEPPVIDWCRSPPPVQVSEKVHAAS----WDEPQFSDNSGAELVITRSH--TQGDLFPQGETIVQYTATDPSGNNRTCDIHIVIKGSPCEIPFTPVNGDFIC-TPDNTGVNCTLTCLEGYDFTEGSTDKYYCAYEDGVWK---PTYTTEWPDCAKKRFANHGFKSFEMFYKAARCDDTDLMKKFSEAFETTLGKMVPSFCSDAEDIDCRLEENLTKKYCLEYNYDYENGFAIGPGGWGA--ANRLDYSYDDFLDTVQETATSIGNAKSSRIKRSAPLSDYKIKLIFNITASVPLPDERNDTLEWENQQRLLQTLETITNKLKRTLNKDPMYSFQLASEILIADSNSLETKKA----SPFCRPGSV--------------LRGRMCVNCPLGTYYNLEHFTCESCRIGSYQDEEGQLECKLCPSGMYTEYIHSRNISDCKAQCKQGTYSYSGLETCESCPLGTYQPKFGSRSCLSCPENTSTVKRGAVNISACGVPCPEGKFSRSGLMPCHPCPRDYYQPNAGKAFCLACPFYGTTPFAGSRSITECSSFSSTFSAAEESVVPPASLGHIKKRHEISSQVFHECFFNPCHNSGTCQQLGRGYVCLCPLGYTGLKCETDIDECSPLPCLNNGVCKDLVGEFICECPSGYTGQRCEENINECSSSPCLNKGICVDGVAGYRCTCVKGFVGLHCETEVNECQSNPCLNNAVCEDQVGGFLCKCPPGFLGTRCGKNVDEC-LSQPCKNGATCKDGANSFRCLCAAGFTGSHCELNINECQSNPCRNQATCVDELNSYSCKCQPGFSGKRCETE-QSTGFNLDFEVSGIYGYVMLDGMLPSLHALTCTFWMKSSDDMNYGTPISYAVDNG---SDNTLLLTDYNGWVLYVNGREKITNCPSVNDGRWHHIAITWTSANGIWKVYIDGKLSDGGAGLSVGLPIPGGGALVLGQEQDKKGEGFSPAESFVGSISQLNLWDYVLSPQQVKSLAT-SCPEELSKGNVLAWPDF 1611 The following BLAST results are available for this feature:
BLAST of TCONS_00017424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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