TCONS_00017209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017209
Unique NameTCONS_00017209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017209 ID=TCONS_00017209|Name=TCONS_00017209|organism=Clytia hemisphaerica|type=transcript|length=326bp
CATTGGGGCAATTttatcaatgaaaaaaaaatctaattattCATTGATCT
AAACTACCAACATTGTTTAAGAAATAATAATGCCTGTACTTTCAGGTGCC
GAATAAACgtcccccgcttgttaatttttcgattttttttcaacctcccc
ccggaccttatttaggtccattttccaacccccccggtaattaggtcccc
ctccccgtttatttaatttgaaaaacttttacgACCCCCTCCTTTATTTT
GACCCCCGGTTTATTTGGCACCTGAGAGTAAGTAGTAATTTGTAATAAGT
AGTAATTAAATAATCATGAAGAGTCC
Run BLAST on NCBI

transcript from alignment at sc0000260:292392..292717

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017209 ID=TCONS_00017209|Name=TCONS_00017209|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at sc0000260:292392..292717 (Clytia hemisphaerica)
GGACTCTTCATGATTATTTAATTACTACTTATTACAAATTACTACTTACT
CTCAGGTGCCAAATAAACCGGGGGTCAAAATAAAGGAGGGGGTcgtaaaa
gtttttcaaattaaataaacggggagggggacctaattaccgggggggtt
ggaaaatggacctaaataaggtccggggggaggttgaaaaaaaatcgaaa
aattaacaagcgggggacGTTTATTCGGCACCTGAAAGTACAGGCATTAT
TATTTCTTAAACAATGTTGGTAGTTTAGATCAATGaataattagattttt
ttttcattgataaAATTGCCCCAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009629XLOC_009629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017209-exon-sc0000260-1491911889:292392..292717TCONS_00017209-exon-sc0000260-1491911889:292392..292717Clytia hemisphaericaexon
TCONS_00017209-exon-sc0000260-1510915933:292392..292717TCONS_00017209-exon-sc0000260-1510915933:292392..292717Clytia hemisphaericaexon
TCONS_00017209-exon-sc0000260-1575043694:292392..292717TCONS_00017209-exon-sc0000260-1575043694:292392..292717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:292392..292717 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21285	0.591359	0	0	0.408898	0.646234	1.16948	2.18971	0.766533	0.316492	1.84317	0.605813	0.806627	0.209423	0.688695	0.184769	0.682861	0.233303	0.322321	0	0.293163	0	0	0.632141	0.976636	0.871624	0	0.887429	0	0.342883
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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