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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017190 ID=TCONS_00017190|Name=TCONS_00017190|organism=Clytia hemisphaerica|type=transcript|length=443bp
GCTCTGTTTACACTGCAGCACAACTCGACCGTGAAGTTCAATCATTCATT
ACATTCAATTTAATCGCGGAAGATAGTGCCAGTCCCCCAAACAAAGGAGT
TGCCATAGTAACAGTTAATATCACTGATTACAACGATAATAAGCCGATCT
TTTCTCGTGAAAAATACGAGTTTGATGTTCGGGAAGACATCAACACGACG
ACAATCGTCGGGAAAGTCACGGCCACCGACCAAGATGTTGAATATTTTAA
CGGGTTCATTTTTCCGGATCGATTTTGAGAATGGATACATTTACGCTAAA
AGGGGTCTGGATCGAGAAACAAGAAGTTTCTACGAATTCACTGTACAGgC
AGCAGACCACGGCGATGTTCCAAACCACCAGGCTTTCGTTGCCGTGAAAA
TCTCCCTCATCGATGTCAACGATAACAACCCCATCTTTACCTC Run BLAST on NCBI transcript from alignment at sc0000260:232200..233982- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017190 ID=TCONS_00017190|Name=TCONS_00017190|organism=Clytia hemisphaerica|type=transcript|length=1783bp|location=Sequence derived from alignment at sc0000260:232200..233982- (Clytia hemisphaerica)
GCTCTGTTTACACTGCAGCACAACTCGACCGTGAAGTTCAATCATTCATT
ACATTCAATTTAATCGCGGAAGATAGTGCCAGTCCCCCAAACAAAGGAGT
TGCCATAGTAACAGTTAATATCACTGATTACAACGATAATAAGCCGATCT
TTTCTCGTGAAAAATACGAGTTTGATGTTCGGGAAGACATCAACACGACG
ACAATCGTCGGGAAAGTCACGGCCACCGACCAAGATGTTGAATATTTTAA
CGGGTTGGTGGCTTACAATATACAACCTTCGCAGTTCAGTAAGTTGCTGT
TGTGTAACTTTCCGAGATTTTTTGATAAAGTTTCCTTTGATTCTTAAGAG
AAGGGTTTTCAGAAATTCTTATGATTTTGGACTATTTAATCGGGATATTG
GGCTTCTCCAGTAATAGTCCGTGCCTCCCTCCCCTGTTGAGGCGGATATC
CATGGGGTTAAATATCTACAAGGGAGTGGATAAAGTGTCTTTTCAAGTAA
AATATACGATATCCAGGGGTAAGCATCTTTATAAGAGAGGATATCCAGGG
GGTTGAGCATATTTTTAAGAGTGGATATCCTAATAAAGTAGGATATCCAG
GGGGTTCGATACTTCGAAAAATCAATATCCTCAACAGTGGGGTAATTTTT
CTTTCCGGAAAAGCCCATTTTAGGAGTTTACTACATAGTGTTATGTTTTT
AGAAGAAAAGAAATTTTCTCGACTTTAGTATTAACCTTTCAACCAATTGC
GAAAATTCCTCGAAACTGACAGAATATTTTGTTCTGCTTAGAGCGAAAGG
GTATTTTCAGCAACAAATTTCTGAGATGAAGTTTCACACGTTTACTTTTC
TTTAGTCGAGAGTAGATTTTGTTTACTTTTTTTCACAGGTTCATTTTTCC
GGATCGATTTTGAGAATGGATACATTTACGCTAAAAGGGGTCTGGATCGA
GAAACAAGAAGTTTCTACGAATTCACTGTACAGGTAACAAATACAAATGA
AATTGGATAATTTCGAAAAAAGATTTTATTTTCTTTGAGGTAGATAGATG
AAATGTTAATGGTNGGATCGAGAAACAAGAAGTTTCTACGAATTCACTGT
ACAGGTAACAAATACAAATGAAATTGGATAATTTCGAAAAAAGATTTTAT
TTTCTTTGAGGTAGATAGATAAAATGTTAATGGTCTAAAGTTGTTTGCTT
TAAGGGGTTATCAGATGATTTTTGATATTTGGCTTAGAGATTTGGCTTAG
AGACCTTTTATGTTCCAGAGACACACCTCTAAATCTTTTGACGCAATTTT
TTCCCAAAGAAAAGCTGAGATATTTGACTTCTTTGAAATCTCTAAAAATG
AGTCTTTACACAGTCTTTACGTTGAATTTCTATTGTTTTCAAGTAAAAAT
TTGAATCTCAGCTTTGGAAAATAATTGGGTCGAAAACTTTGGAGGTGTTT
CTTAGGACCATAAAAGGTATCTCTAAGCCAAAATATCAAAAATCATCTGA
TAATCCCTTTGAATTGTGATAGTATTTTGTAAAATTTTAGCTCGATAAAA
AGATGATGGCATATATAATATTTTGCTTAACTCATTGAAATACTAAAGTC
TGAGAATTCAGTAATGAACTTCCTTGCGAGAGTCTTTACTCGAGTAATTT
TTGAATTATAACATTTAATTTTTTTCTTCTTCTTTCAGGCAGCAGACCAC
GGCGATGTTCCAAACCACCAGGCTTTCGTTGCCGTGAAAATCTCCCTCAT
CGATGTCAACGATAACAACCCCATCTTTACCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017190-exon-sc0000260-1575043694:233730..233982 | TCONS_00017190-exon-sc0000260-1575043694:233730..233982 | Clytia hemisphaerica | exon |
| TCONS_00017190-exon-sc0000260-1575043694:233000..233094 | TCONS_00017190-exon-sc0000260-1575043694:233000..233094 | Clytia hemisphaerica | exon |
| TCONS_00017190-exon-sc0000260-1575043694:232200..232294 | TCONS_00017190-exon-sc0000260-1575043694:232200..232294 | Clytia hemisphaerica | exon |
| TCONS_00017190-exon-sc0000260-1510915933:233730..233982 | TCONS_00017190-exon-sc0000260-1510915933:233730..233982 | Clytia hemisphaerica | exon |
| TCONS_00017190-exon-sc0000260-1510915933:233000..233094 | TCONS_00017190-exon-sc0000260-1510915933:233000..233094 | Clytia hemisphaerica | exon |
| TCONS_00017190-exon-sc0000260-1510915933:232200..232294 | TCONS_00017190-exon-sc0000260-1510915933:232200..232294 | Clytia hemisphaerica | exon |
| TCONS_00017190-exon-sc0000260-1491911889:233730..233982 | TCONS_00017190-exon-sc0000260-1491911889:233730..233982 | Clytia hemisphaerica | exon |
| TCONS_00017190-exon-sc0000260-1491911889:233000..233094 | TCONS_00017190-exon-sc0000260-1491911889:233000..233094 | Clytia hemisphaerica | exon |
| TCONS_00017190-exon-sc0000260-1491911889:232200..232294 | TCONS_00017190-exon-sc0000260-1491911889:232200..232294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000260 | supercontig | sc0000260:232200..233982 - |
Blast
BLAST of TCONS_00017190 vs. Swiss-Prot (Human)
Match: PCD12 (Protocadherin-12 OS=Homo sapiens GN=PCDH12 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.654e-18 Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 3
Query: 21 QLDREVQSFITFNLIAEDSASPPNKGVAIVTVNITDYNDNKPIFSREKYEFDVREDINTTTIVGKVTATDQD------VEYF 248
+LDRE+ SF L A D+ +PP G ++V VN+ D NDN P F+ +++ED T++ K+TATD D VE+F
Sbjct: 201 ELDREIHSFFDLVLTAYDNGNPPKSGTSLVKVNVLDSNDNSPAFAESSLALEIQEDAAPGTLLIKLTATDPDQGPNGEVEFF 282 HSP 2 Score: 40.817 bits (94), Expect = 1.654e-18 Identity = 25/57 (43.86%), Postives = 30/57 (52.63%), Query Frame = 1
Query: 262 FRIDFENGYIYAKRGLDRETRSFYEFTVQAADHGDVPNHQAFVAVKISLIDVNDNNP 432
F ID + G + +R LD E YE VQA D G P A V I ++DVNDN P
Sbjct: 295 FSIDAKTGQVILRRPLDYEKNPAYEVDVQARDLGPNPI-PAHCKVLIKVLDVNDNIP 350
The following BLAST results are available for this feature:
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