TCONS_00017139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017139
Unique NameTCONS_00017139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017139 ID=TCONS_00017139|Name=TCONS_00017139|organism=Clytia hemisphaerica|type=transcript|length=471bp
TGaagaaaaaggtcagtaacCATATCTTAATGGAAAAAATTCTGGTGGGA
ATTTGGCAGTTgacagaaaaaatttttcagagggaatttaattggGCAGA
TGTCTTGAAGAATTAAATATGgctggaatttaatttggctaATGAAGCCA
AAAAAGCCTGAAATAAGACACATTAGGGGAATGAATGCAATAATTATATA
TAATATGTGAGTGCacattcttttttaaagaaatttttgtttgcttgcgA
CGTTTTCTTGATGCCCCTGGATGCCCTggtaaataatttcaaaatgtttg
gtTGGTGATtttgtgaagaaattttttcaaaacaactaAGAAAAGTTTGT
TCCCAAATTGTGCGCCTACTGAATTTTTAGATGGCCCCAGCTGCTTGACT
ATTATTTCAaagtcattttttatttgaaaatatttaatttattgATACCC
ACAACTAAAACATTGAAATAG
Run BLAST on NCBI

transcript from alignment at sc0000259:261836..262306

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017139 ID=TCONS_00017139|Name=TCONS_00017139|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at sc0000259:261836..262306 (Clytia hemisphaerica)
CTATTTCAATGTTTTAGTTGTGGGTATcaataaattaaatattttcaaat
aaaaaatgacttTGAAATAATAGTCAAGCAGCTGGGGCCATCTAAAAATT
CAGTAGGCGCACAATTTGGGAACAAACTTTTCTtagttgttttgaaaaaa
tttcttcacaaaATCACCAaccaaacattttgaaattatttaccAGGGCA
TCCAGGGGCATCAAGAAAACGTcgcaagcaaacaaaaatttctttaaaaa
agaatgtGCACTCACATATTATATATAATTATTGCATTCATTCCCCTAAT
GTGTCTTATTTCAGGCTTTTTTGGCTTCATtagccaaattaaattccagc
CATATTTAATTCTTCAAGACATCTGCccaattaaattccctctgaaaaat
tttttctgtcAACTGCCAAATTCCCACCAGAATTTTTTCCATTAAGATAT
GgttactgacctttttcttCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009590XLOC_009590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017139-exon-sc0000259-1491911889:261836..262306TCONS_00017139-exon-sc0000259-1491911889:261836..262306Clytia hemisphaericaexon
TCONS_00017139-exon-sc0000259-1510915933:261836..262306TCONS_00017139-exon-sc0000259-1510915933:261836..262306Clytia hemisphaericaexon
TCONS_00017139-exon-sc0000259-1575043694:261836..262306TCONS_00017139-exon-sc0000259-1575043694:261836..262306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000259supercontigsc0000259:261836..262306 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.270822	0.132047	0	0.299998	0	0.432902	1.39274	1.79282	0.342325	0.84805	0.13719	0.450916	0.360231	0.374103	0.153782	0.330063	0	0.104191	0	0.451885	0.261847	1.14948	0.31052	0.423461	0	0.129753	0.185676	0.198158	0.901775	0.918766
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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