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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017026 ID=TCONS_00017026|Name=TCONS_00017026|organism=Clytia hemisphaerica|type=transcript|length=314bp
ACCCATGGCAACCAGTTCAAGCTCACCAACAGTGAAACCGGCAGTTAAAC
CGAAATCTTTTCTAAGAacttttttcgaaagaaaaaatgacaaacaacaa
caacaacaacaagcaaCAAATACCCTTCAACCGGCATCCTCACCAACGGT
GAAACAGACAGTTAAACCGAAAACTCTCCCCAGACCCCCAATTCGACTTG
ACgaacaagaagaaaaaaagcaaCAACAACAAGCAACAAATCGCTCTCAA
CCGGCTTCagCCAAATGGGATGGACAGAAAATTCATGAGTTAGTGTTCCA
GGGTGAAACGCTGA Run BLAST on NCBI transcript from alignment at sc0000257:89835..100565+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017026 ID=TCONS_00017026|Name=TCONS_00017026|organism=Clytia hemisphaerica|type=transcript|length=10731bp|location=Sequence derived from alignment at sc0000257:89835..100565+ (Clytia hemisphaerica)
ACCCATGGCAACCAGTTCAAGGTAAACGAAGCACTATGTGTTAGCTTTTA
CTGTaaatcagtttttcattttttctgaaaCTAATTCTAACCGCCTcaaa
aaaagtacttttttttttatttcagctaaaaaatctCTCATCTAGGTGAT
TAAGGAAAGCAAATCAACATTCTGTTGATCTGCGACCAAGCTTGAGTTCT
TTGAAATTGTGctagcgtaaaactcctactaaATCCATAAATTACTTGGG
GCTCTCTTAATTCAaagatttcaaacaatttttgactACACATGAAACAC
ACCGGAAAGAATTGTTTTTTTCAACTTCTAGACTCATTCAACTCTCCTTG
TCCCCCAGGGCTAGACGAGAGTGATCTAGTATGCCATAGCAAGACTTACA
CTTCCATTATATCTCTAAAAGGACCACGATCCGTTAATGGAAGTCAGCAA
ACAAGATAATTTCctaaattctaaaatatttttgaaaataggtgtAAAGT
TCCTCATTTTTCCCTTAAAACAAGAACAACATAAGAATAATCTGAAGCtt
gaaaaataacaacaactgaggctttaaaaaagttaactcaattttataaa
aagaagacaaatcaattgaatttaTGACATCCTCTTCTCCTAGACCTGGT
GGAAACAAggaaaaaaggcaaaaatatgGTGATTTCCCTGTGGATAATTA
TAATCCAATGTTTGTCCCTACTGAAAATAATCGATTGAACAAATTCTCAC
GACAAAATATTGTCCTATTTTTCCATTCTCACtgaaattttctgacttta
atTAAAACAATAGAAGTAACTCCCCAGTCGCAAAGATCATGGGAGTAACA
AGCCCGTTATTTCCACCCCACTGGCTCAAAAGATTCCACCGGTTCTGTGA
TGGTCTTGTGATATACAATATTATCAATCCAACTAATTTAGCTGGTGTCA
ATGACACTTACTTTATTTCAATTTATCTCTTATTAACCCCACCTTTTCAT
CTATTAGCTCACCAACAGTGAAACCGGCAGTTAAACCGAAATCTTTTCTA
AGAacttttttcgaaagaaaaaatgacaaacaacaacaacaacaacaagc
aaCAAATACCCTTCAACCGGCATCGTGAGTATTTAGCGCTTTTAAGCTTT
TAAGAGCACAGTTATTCATTTAAGAGCTCTGACCATAATGAAGTTTTCAT
GATTGCCGTGttcaaaatgtgttttctgactgatgtaaccaacaaaacta
tgacatgttatacattttctgttagacaaactattcctgaatctgaaaat
ttaaaaattgcattgaaaaaatttgatgaagaagaaaatgaagacttttg
agagaaagagtatttcaactttgaagagctaagtttcggcgaagaaaaaa
cattttgaaaaatttttcgcagtagatgatGTATCTtgtaccgaacaata
aaaatttttgcagaaaatttttctaaatgcttttttgtctcgaaatcttc
aaaatagtggtttttcaaaaatttttcatctggattttgtttaaaaaaac
agtcataacttttgacacatctttttagaaagattttccgcaaaatttaa
aatagttcaattctttgcggacagtttgaaaaaacttcgaaacaaaaagg
ttaattactcattcaaacttagcactttttataaaagaaggtgatgcaac
atattattaacgtctttttaaagttcataacgtcattcttgcaattaagt
tcttaattactcttaagggatttgattaaaaagcaatttataaaggcaat
tctttgttaaaagtgctaaagaatctaaaacataactttcatgttcagat
actaaaatcaattttccgactatggtcagagcccttaagaaccCCCTCTC
GGTGTAGGCAGACCCCCGTTGGGGTCCCTCTCCTTGcgaaattgaattga
aatatcttttcattgaaatggaaattttcaattttatttatggGATACAC
AATATACTAAATAATTATGAATTCCTTCACCTAATGTTCTTTTTCGCAGT
GAAATTACACTCGAAGAATAAGTGAATGTAAACTCTAAATTATCTAGAAT
GACCCAATTGATGAGAATTTAATTGCTGTTTATCTATATCGTCGATGTAt
tttactgaaatttttttacattcagaTAGTTAGTAAGAAagacatttgaa
aaattcagATTTCAAACGAAAAAATGTTCAGTAGTAACCAAGTTACGAAA
AACTATTTATTAGCAAAAATTGATTGTCAGTCTTAAAAATAAAACGTTGG
CGAAAATATCATATATGTAGCTTCATAAAAAAGTTCTAATGGTACAGTAA
AGGGTTAGTCTATTATGTTTTCTCACGTGTTCTCCTGACGAATAATCTGA
AGCTCAAAGTGctaaaaaataaagattatCTGAGACTCAACAAAAGTTTT
TccggttcttataaaaattagCGTATACCCAATAATTGGTTATAAGGTTG
GGTTAAAACTTGTACATATTTTCATCAATCAAATTAAACTGGCTTGTATc
aatgacaatttattttattgcaAGTATATCTCTTATTATATCAGCCCTAA
TTATTCATTTACTAGCTCACCAACGGTGAAACAGACAGTTAAACCGAAAA
CTCTCCCCAGACCCCCAATTCGACTTGACgaacaagaagaaaaaaagcaa
CAACAACAAGCAACAAATCGCTCTCAACCGGCTTCGTGAGTATTTAGCAC
TTTTAAGACCATTATTGCTCATATATAACCCTTAAACAGCTAAGTACGTG
AATGTACGTTTAAAAAGCACCAAAACCCAGACTTTAAGACCTAGCTCCTG
atcacttgatttaaaaagggCGTGAACCAAATGCTTTTAAAAGTGTATAA
CATTTGCTTTCTAATGGTGGTAAATCCACAACTACAAGCTACAAGCTCTT
ATGCTATTTCaaacttttagattttcaaaaaaaaaatgggttattttaaa
aagcatgATACCCCAATTACTTATTGGGGTACCACTTTCCGCCCTTAATT
TTGTTAAATGACGCTTAATTTCTTTATAATATGGTATGATAACCTTCCAT
TAATGGTTTGATAAAGTTAGATTTAAGATTGTCACAAAACTTTTGCCACA
GTTGCTGTTCTCCGACAGGTAGTGAAAATCTACTGCTTTTTAATTAAATC
AGCCGCAAATCCACAAAAGGATACAAATTAACAGTCATTTTAGCCTTGGA
AAATTTGTAAAGATAGCTTTTAGAGCAAGAAAAGCAATGACACTTTCTGT
TGTCATTTTTATCACTAAACTGACACTTTCtaccaaaaattttgatgaca
tcataaaATGCAATAGTTCTAAGGTTACTTTGATTAAGAATTACATTCAT
ACTCGgtgtgatgcaggaaatataatTGGATATGAATTGACATTAGGTAG
TAGTTAAAGTTAGTTAAAATAGTCTTTGATTCTCTCAAACACGTGTTTTA
AAgcaaataaaccagctgcgctggaagctccggctttagagattaaaaga
tgtgaaagatgagcttgttgagttagttgtgttcgaacgttgcccacaaa
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNaggtaccaatctttagacaaattgactacggatcggtct
gataccacttaatcttcatctggataaataaacgctcataaaatgctgtt
atctgaaaaaaatacgtgtgatttgaagtgcgatatctcacgaatgaaaa
gtgcatgaaggttgcctgatacaaaataaacagatgaatgtttttagaac
aataatatctaattaaaaaattccttctgtgaggctgcctataggaaaat
acactttttctaacccaaattttggaaagatatacatcacgtgatcgatt
ctgtccaatagaaggttgcaaatgaagcaagtttttatttaattgcactt
tttacgatgcaaaatgtcattaatatttttacaaccgtaacacggatgtt
ttttgagaatcaaggcaagttggttatctattatttttacatcgttgttg
aaatacacaagtaaacattcaaaaagtatttgtttgacaaattttgagtt
ttgtttagaaatatttcgcggatgaggcctttccaaatttccattgagac
ttaatttcgcgaatgacacccgaaatttaatccccgcgaaagtttatccc
attaagccACGggttttagctaagcattattttttctgctgggataatac
ttggagaaGATAGGATAAActaaataaaatggtacaataNAGCCCatccc
ccgcccactcatcctcaactaaaaagttcaaaattggagctaaaggagat
aaacatttagaagtcaatatttccaagttcttataaattagtccagccat
gatgcgccgttgatttgattgtccggataaaatttcgttaattggataaa
ctttcgcgaggatttaatttcgcgattgggCCTACCCTACCTAAttttgc
ggggacttaatttcgtggGTGGCattattgggtggcaatattttcacgat
tttgtgacttaacTGTCAAATCGTGcattttggttgttgaaatcaacgat
gtaaaaataatagataaccaactacctctagaaggcacttctcccaagag
aacaaccattgttttcctatcgNtagtatcctttactgaattctcatagt
gatatgtttgtaaaaaatctgtgtcgggcttgaaaaatcaaaaggaacgg
tcgccagccgcgacgaaattacgacaaaatccaaaaacgatcattttcag
ccatgtaatactgtgaaaatttctccaatcttgttcaaatttacacagaa
attgtgttttagtatcctttactgaattctcatagtgatatgtttgtaaa
aaatctgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNaaatcaaaaggaacggtcgccagccgatgatgaatacgacaa
taacaaagtccaaaacaggatcattttcagccatacataacaccacaaaa
aaatactgtggctgtgtgtttgaaagtttcattgtcaagtttgaaaatcc
aaaagggaCAACCACCAATTATGAATTTtatatcatcatgaaaaatgacc
aaaagtccaaaatagatCATTTTTACAGCATAAAATCATGAGAAACACAC
GTATTTGAATTCAGTATACAGTACAACGTACAGCGCaccatcaaacttct
cataaatcatgtccaaaacatcatgaataaggatgaaaatgatcaatttt
tcactgagatttgtcAGTATTTGCTACACTGTCAGCTAGGGTAgatgtta
tatcggatggccaatcgtcaccttgttttctttcctatctcttatcctat
ttttctcttttctgactgtctgagtttctgagacttagtNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatttctgactgagt
tttcatacctgtcaatcatttgtccatcaatttcgaccagtctaattttc
gcaccgagtgggattcgaaccaccactaaagaaagaccttcagattcgga
agccagcgctctatccatggtgccatcgccgcacagcaaaaccaTGCAAT
TCATAACAtcttataccgaactggcaaaagacgggggtaatattattata
atatgggtaacagtaccccttttttaaacctgactgaaattNGTTtttgt
taaatcggaatagatcatcggattagataaacagacaaaaaatgtcttaa
ccattgtcggaagagagaattaaaggctcctaggccggagcaacaAGCAT
GATATTATGGTATCAACACATTTCATATTATCTGTAttatttgttattat
tatatCACTCTACATTAATTTTTAAAAGcatatgttattctttttcacCC
GATTTAATCCTGGTAAGTAAACTAAATGGTTTTCAAAATaacccaaaaaa
aatcaagaaaaaaacgcagatttatcaaaaaaattaaggcATGCTAGGTT
AAGAATCCCTTTGTCTAGAAAGACCTACCGTGAAAATATCATATattgac
ctgtgccgaccattcgagattctattcagcgcgtaatcaacgcagagaaa
agtaaccatgacgaccatccaagatcttggatgaagttcaaagttgatat
ttctaTTCTCATCGTTGAAGACgtaactcaaaaatgtcatcaatgctttt
taaaaacagTCAGTGATAGATAATTGTAACATAAAGTGTGCCTATTATTT
CGATttaattaaagtgacatttccataattgagagtttagtaattactgt
taaaCATTTCGGAATcatgtaaaacatttttttcgaaagaaactcatttt
aattacacttggaggtttctggagagttcgtaaatagtaaactgcatact
gatacagtctgctagacattaatgaggtaatatttgctcttcatctttga
ttctttctacagttaTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NACTAAGCTATCATAAAATTACACGTTAAAAGTTTTATAGCTATTGTTTg
tgagataaaaaattgtttacgCTAAAAACATTCGCAGGAGATAGAAGAAG
GCATTGCTACCTTTTCACCTATCCCCTTGATTGCGAAAGTGTTTATTTAC
ATCTGCTACATGTTTCATATAAtagaaaaagagaaataaaagaataaaaa
agaaaaaaaggattaTATAATTTATTTACACCTATGTGATAAATTGTCAT
TTAGTAATATTTCTCAACATCTGTGTTAAAgatgattagattgacacatg
cgtgataaaatttctcaacctctgatactccgGGTAAGAAAGACCCCCTT
TTACTATTTTCTCAGGCAATTTAAGGCATGTCcaaactttttaataaaat
tttatcaaaaggatcactttcaaaacaaaatattttgaaatctcGCTGAC
GTCACCACTATATCACAAAATTTAGGATTTTGCTGATTTCTACTAACGTA
agcaagttttgaaaaagagttTTATGCAAAAATGGtccttttaatgatgt
gcaactttggtccaaattttatGTTCATACCACCAGCGAAGgtgaagtta
ttcaaaaaacaacttttacTGACATAAGCTTTTTTCGGTTTTTGCCTACT
ATCTTTTTTaggtcaaaaaattaattatgatACAGCTGTTCTATACTCCA
ATGACGCTTCTTTCGATGCATGAAGTGATATGATTTGATAAGTGGGAACG
GTGGTAAAAAATTACGGTAAATTTGGCTCTGGTAAATTAATTTACCCGAG
TCATCCTTAAagataaaattttcattttgattatgGAAACTTTACTATTA
ATGGCAGGGGTACTGCAGTTCTTACATGAATGGTAATttacaaagaaaga
ttttttcagaattttttcggaaaaacgGTCAAAAATTTTACACACTCCCC
TCAAAGTTCTGTTATAAGAAGAGTGAAACAGCTTGTTCTTCAGGAAAGGT
CCAGGTTTTTCAGAATAAGGTCCAAATATTTTTACCAAACATTTACGAGG
ACAACAAAGTTGACCCAAATTTCACATCATCacgtcaaaatttttatttt
aacaatCAGGCCATTTCTCTCGATTTTTATCAAGTCCGCAAAGCTTGATT
CTTTTGGACAAAAAGGTCAGAGACGAGTTTCTCACATAGCCTCACTTTTC
TATCTTAGCACGAGTTCTTTGAATATGAAGATTTCAATTGAAACTTTTAT
ATTACACCTCCCCTCTTCTTGTTATATTGCCGAAATTAGCCTTGTTTGTA
GGGACAGTATGACTGTGTAATTTCCTCATAAAGACTTACCAAAGGGAAAA
AAGATTTAAGGTTCCGATATTGGTAATTTATTTTGTCACATCCagatacc
agtggataccccttaaaatcacataccccttaaaacccacaatgttgcat
ttttggctttcataactaccagatttaattttatgtggtatgtttcactt
ttttacaacctcttataaatgttCTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAACACCAA
ATTTGTATCCATCAGCTTGAGTATCCCGTTAGCAAGGGTCGGACTTTGtg
gtttttagccttatttttgtaggttttaaggggtattttcattttaacac
atatttttgagatcatttaggtactaatggtatattcaaaacattagtaa
ctttacagtgaatcactgttcaaaatttgaggtcaactgaacttttttgt
aaaaagttattcgagaaaaaccattttgtaggttttaaggggtaaatagc
taaaactgcactttttcacttcctcgtgaaaaactgaaaactNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNACaacgtactttcaacacaaaaagtttcagccttacactccaactaaa
caatgagatagagggtaccactttttattgtgggttttaaggggtatcca
ctggtagttAGCAGAAAAAGGAATACAAAAGGCTTATTTGAATACTTTTA
TCTATATGATAATAACCGTACATGTCTGAAACCTTCTTTGCggtcttttt
gtttttgctagCGCTTTTAGCACTTGCAGGAATTTATGAAGGGTATTGTT
TCATTCAAAAGCAAGAGTTTTCTAcctaatttattcaaaatatagATAGT
CAAACCCCCCTGATGAGAATCATTATCATGTCGCAAAATTACTTGCGAAA
TAGAGAAAACAACAGCATTACTCACAAAATCATCGTGTAAGTTTTACAAT
AAAAGATAATTAGCAGTAGCAATAAATTATAGTTTCTGAACGAGTTTGAA
GGTACGCtatattcaattttgataatatttgcAGGTGAATTAGAAGTCCA
TCCTTGACTAGGGGGACGGGGTATAGAATGTTTAAAAGAGATTTCATTAA
TTTTCTAAGTTATACCACTTAGATGTGTTCATATTTACATGTTCGAACCT
TTTACCTGTTGATTACAAATCCAATCCATTATATCATTTGCAAGATAAAG
gattgaaaatagaaatgtcattttttcacaATAATTTAGCCTTTTATGCA
AGTGTTTTTTCCACCGAAAGTTAGTTTAGACGTCAATCATTCAAATGTAC
GTCAGgaatatttttaattatcgCACCAACTAGGCAGTcgtaaattttca
tattttcattagaAAAACCGGTCATTCATACATGGTATTTTGTATAAAGT
TTTTTGTTAAGAAAATACGGTAATCAGAAGGGTGTTTTACTAAGAATACC
AATTctcaaaaattgtttctttTCTTCTAAATGATTAAATATGGCAACTA
TCAATATATTTCGGATCCCAAATTGTTCAAAAGTATGAGATTTTCATccc
caaagaaattttttctttgttccgCAAGATTCTTTCGCTGTAagaatttt
ggatatttttgaCAATGGAATTTTGATCTTTGCTTATTCCATCTCTTTCT
TATAATTGTTTTGTATTATTGTTTCATTTAGAGCCAAActctattttcaa
cttttcgatCAGATTTTTATGTCTCCTAGTGCAACCAAGCTACTTGTTtt
acaaatttctttttaatatttttagagCCAAATGGGATGGACAGAAAATT
CATGAGTTAGTGTTCCAGGGTGAAACGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017026-exon-sc0000257-1491911889:89835..89855 | TCONS_00017026-exon-sc0000257-1491911889:89835..89855 | Clytia hemisphaerica | exon |
| TCONS_00017026-exon-sc0000257-1510915933:89835..89855 | TCONS_00017026-exon-sc0000257-1510915933:89835..89855 | Clytia hemisphaerica | exon |
| TCONS_00017026-exon-sc0000257-1575043694:89835..89855 | TCONS_00017026-exon-sc0000257-1575043694:89835..89855 | Clytia hemisphaerica | exon |
| TCONS_00017026-exon-sc0000257-1491911889:90842..90958 | TCONS_00017026-exon-sc0000257-1491911889:90842..90958 | Clytia hemisphaerica | exon |
| TCONS_00017026-exon-sc0000257-1510915933:90842..90958 | TCONS_00017026-exon-sc0000257-1510915933:90842..90958 | Clytia hemisphaerica | exon |
| TCONS_00017026-exon-sc0000257-1575043694:90842..90958 | TCONS_00017026-exon-sc0000257-1575043694:90842..90958 | Clytia hemisphaerica | exon |
| TCONS_00017026-exon-sc0000257-1491911889:92450..92569 | TCONS_00017026-exon-sc0000257-1491911889:92450..92569 | Clytia hemisphaerica | exon |
| TCONS_00017026-exon-sc0000257-1510915933:92450..92569 | TCONS_00017026-exon-sc0000257-1510915933:92450..92569 | Clytia hemisphaerica | exon |
| TCONS_00017026-exon-sc0000257-1575043694:92450..92569 | TCONS_00017026-exon-sc0000257-1575043694:92450..92569 | Clytia hemisphaerica | exon |
| TCONS_00017026-exon-sc0000257-1491911889:100510..100565 | TCONS_00017026-exon-sc0000257-1491911889:100510..100565 | Clytia hemisphaerica | exon |
| TCONS_00017026-exon-sc0000257-1510915933:100510..100565 | TCONS_00017026-exon-sc0000257-1510915933:100510..100565 | Clytia hemisphaerica | exon |
| TCONS_00017026-exon-sc0000257-1575043694:100510..100565 | TCONS_00017026-exon-sc0000257-1575043694:100510..100565 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000257 | supercontig | sc0000257:89835..100565 + |
Blast
The following BLAST results are available for this feature:
|
