TCONS_00001732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001732
Unique NameTCONS_00001732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001732 ID=TCONS_00001732|Name=TCONS_00001732|organism=Clytia hemisphaerica|type=transcript|length=375bp
GGACAAGGCAACAAATACTGATAAGGTTAATAATGGAGAACAACAAGGAG
ATAAATCTACAAACGCTCGATTGGACAGGCTGGAGAAGAAAATCGAGAAA
CTTTTAGATAAGGAAGATGTCgctaaagataaaaaacaaaggacATACGC
AGAAACTACCAAAGAAGAACTGAAGAAGCAAGAGTTAACTATGAAACAAC
CGACATATGCTAGCATTACAGAGTTAAAGAAACAAGAGGTAACGATCAAG
AACTTcatcaaagaagagaaagaagaagtaCGATGGCTGAACCTGACAAA
GTGCAATATCATTGTTCACAACATTGGTGAACTCAAACATGAAACCCTTG
AAGACCAGCGAACAAGTGATAAAGA
Run BLAST on NCBI

protein sequence of TCONS_00001732-protein

>TCONS_00001732-protein ID=TCONS_00001732-protein|Name=TCONS_00001732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
DKATNTDKVNNGEQQGDKSTNARLDRLEKKIEKLLDKEDVAKDKKQRTYA
ETTKEELKKQELTMKQPTYASITELKKQEVTIKNFIKEEKEEVRWLNLTK
CNIIVHNIGELKHETLEDQRTSDK
Run BLAST on NCBI

transcript from alignment at sc0000011:549844..550218

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001732 ID=TCONS_00001732|Name=TCONS_00001732|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at sc0000011:549844..550218 (Clytia hemisphaerica)
TCTTTATCACTTGTTCGCTGGTCTTCAAGGGTTTCATGTTTGAGTTCACC
AATGTTGTGAACAATGATATTGCACTTTGTCAGGTTCAGCCATCGtactt
cttctttctcttctttgatgAAGTTCTTGATCGTTACCTCTTGTTTCTTT
AACTCTGTAATGCTAGCATATGTCGGTTGTTTCATAGTTAACTCTTGCTT
CTTCAGTTCTTCTTTGGTAGTTTCTGCGTATgtcctttgttttttatctt
tagcGACATCTTCCTTATCTAAAAGTTTCTCGATTTTCTTCTCCAGCCTG
TCCAATCGAGCGTTTGTAGATTTATCTCCTTGTTGTTCTCCATTATTAAC
CTTATCAGTATTTGTTGCCTTGTCC

Coding sequence (CDS) from alignment at sc0000011:549844..550218

>TCONS_00001732 ID=TCONS_00001732|Name=TCONS_00001732|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000011:549844..550218 (Clytia hemisphaerica)
TTTATCACTTGTTCGCTGGTCTTCAAGGGTTTCATGTTTGAGTTCACCAA
TGTTGTGAACAATGATATTGCACTTTGTCAGGTTCAGCCATCGtacttct
tctttctcttctttgatgAAGTTCTTGATCGTTACCTCTTGTTTCTTTAA
CTCTGTAATGCTAGCATATGTCGGTTGTTTCATAGTTAACTCTTGCTTCT
TCAGTTCTTCTTTGGTAGTTTCTGCGTATgtcctttgttttttatcttta
gcGACATCTTCCTTATCTAAAAGTTTCTCGATTTTCTTCTCCAGCCTGTC
CAATCGAGCGTTTGTAGATTTATCTCCTTGTTGTTCTCCATTATTAACCT
TATCAGTATTTGTTGCCTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000918XLOC_000918Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001732-proteinTCONS_00001732-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001732-exon-sc0000011-1491911889:549844..550218TCONS_00001732-exon-sc0000011-1491911889:549844..550218Clytia hemisphaericaexon
TCONS_00001732-exon-sc0000011-1510915933:549844..550218TCONS_00001732-exon-sc0000011-1510915933:549844..550218Clytia hemisphaericaexon
TCONS_00001732-exon-sc0000011-1575043694:549844..550218TCONS_00001732-exon-sc0000011-1575043694:549844..550218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:549844..550218 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.56466	0.625236	4.83972	3.55119	1.44108	0.455503	1.64864	2.31515	1.08059	0	0	0.711686	1.27925	1.62374	1.09222	1.30236	0.481319	0.328891	0.454381	1.42643	2.27302	4.23321	1.22524	0.44557	1.83571	2.45748	1.17222	1.56378	0.474428	0.966734
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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