TCONS_00001730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001730
Unique NameTCONS_00001730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length159

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001730 ID=TCONS_00001730|Name=TCONS_00001730|organism=Clytia hemisphaerica|type=transcript|length=159bp
AGAgtctttatttttatcatttagttaaaaaatcaaaaatggaaTGGAAA
TTAGATCATGTTAAAAGACACGGTTTGGTCAATCGTATACCATTGATGGA
ACAGTTATTAGAGTTCCTTTTGAACAAGACAAAAAGTGGATGAAATAATG
TGGAAAATG
Run BLAST on NCBI

transcript from alignment at sc0000011:501686..501844

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001730 ID=TCONS_00001730|Name=TCONS_00001730|organism=Clytia hemisphaerica|type=transcript|length=159bp|location=Sequence derived from alignment at sc0000011:501686..501844 (Clytia hemisphaerica)
CATTTTCCACATTATTTCATCCACTTTTTGTCTTGTTCAAAAGGAACTCT
AATAACTGTTCCATCAATGGTATACGATTGACCAAACCGTGTCTTTTAAC
ATGATCTAATTTCCAttccatttttgattttttaactaaatgataaaaat
aaagacTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000916XLOC_000916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001730-exon-sc0000011-1491911889:501686..501844TCONS_00001730-exon-sc0000011-1491911889:501686..501844Clytia hemisphaericaexon
TCONS_00001730-exon-sc0000011-1510915933:501686..501844TCONS_00001730-exon-sc0000011-1510915933:501686..501844Clytia hemisphaericaexon
TCONS_00001730-exon-sc0000011-1575043694:501686..501844TCONS_00001730-exon-sc0000011-1575043694:501686..501844Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:501686..501844 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top