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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016920 ID=TCONS_00016920|Name=TCONS_00016920|organism=Clytia hemisphaerica|type=transcript|length=582bp
AAAACTTTTGATTGCCATGCCAGAGCACAAAAACACAAGCTGTAACGACG
ATTTTTCTATGTGCACATTTTTTTCTAACTCTCTGTTGTTTCTCTTGTGA
TGTTGATATAGAAAACgcttttaagaagatttttttggaaagaataatTA
TGGTTTCAGTTTGATGTGGCTTTAAAGATTTCTCGATGGTTACACCTTTA
GACACCATATTGGTTTTAACTGAATGGAAGTAAGACGACGTTCCCCTAGC
AACAGTGTAAACATGGAATCGTTACCTTCGTCACAAGAATCTACTCCCGA
AATGCCACGCAAAGCGGATGATAAACATGAACGCGCGCCTGAAAACGAAG
ACGAACGCAAACAACTTTCAGATGATTTAAGAAACTTGGACGAACAATCG
GCCCGCGCGGCCCGCATGTTGGTTTATAAAAGGAATAAATATGTGTTTTT
GTTACAATCAATGCTCCTTGGGATTTCATACTCCATCATTTGGCCCACTT
TATTACCGTATATTCTTGAAGATTCAGCTCAGaTTTACAAGTCAGATCAA
TCGCAAGTTGTCAGTCGTATTTTGTATGGAAT Run BLAST on NCBI transcript from alignment at sc0000254:291567..298338+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016920 ID=TCONS_00016920|Name=TCONS_00016920|organism=Clytia hemisphaerica|type=transcript|length=6772bp|location=Sequence derived from alignment at sc0000254:291567..298338+ (Clytia hemisphaerica)
AAAACTTTTGATTGCCATGCCAGAGCACAAAAACACAAGCTGTAACGACG
ATTTTTCTATGTGCACATTTTTTTCTAACTCTCTGTTGTTTCTCTTGTGA
TGTTGATATAGAAAACgcttttaagaagatttttttggaaagaataatTA
TGGTTTCAGTTTGATGTGGCTTTAAAGATTTCTCGATGGTAagtttttag
ctttttcgcGTAAGTTACAGGCTGCTGAAAGTCTATCTTTGATTTAGCCT
GGATGCCCaagttcaaaattttagaaaaaaaaatttacctcaacatacaa
agttctaaaatcatagagcttggtctccctagagaatgaaagtgcaaacc
agaacataaaatatcaaaaactagactgtgaaatagtttacagcctgaaT
ATCCAGGCTATCTTTGATTTTACAGGGGACAAAAAggatagaaaaacaaa
acattaattaaATTTGGTGTCTCAGATTCTAGCTAcgagtctgttcctct
aaagaatcctgcattgtaacacgtatgcgtgaagtcaggtaacttgcatt
agtggagggaaacttgcatagccatcaaatgactgaccaatcaaagcagc
tccgctcgcagctctctactctaccatttttgttttgatttaactttata
ttttaatgaccagccaggtcattcatttgagggctatgcgtgttagcctc
cactgatgcaagttacccgatctcacggtatgcGTGATCTGTCGTTCTTT
TaaccatatgtagttaattcccgtgataaaaaaagacgaatGAATACGta
aggagggggggggggtacagtcacttgttgttttttatgaaatttgtcat
tcttttgtctatttttagtaatgcagtaTTCTTTAAACAAACCCCCTCTA
CATAGTAATAAAACTTCGACTTTAGAAAGATGTATACTATTAGCTCAGAG
AagtgtaaagagatggaaaaacagcttctttaaaacaatggaaatacggT
TCGTCATGTACCAGGTCCTTTTCCCCTAAGGGAGTTAGTTTTAGTTGATG
GATTTCTTTTGctgttgataaaaaaaatctgtATGATTAGCGTGACGtga
cgaaattcttttgtttttagtcTAATTATGCGTAAACTTATATTTTGGGA
ATATCTCACGCAGacctagacgatgttatcgtccattacattgatagtaa
aggcgggaaaaatggcggtatggcgttatggcggtgaacgggaaaaaaat
cggcggtagagtttcgaagaaacggctgtaaactcttttcagcaaaaaac
ccgatttttcgttttctcaagacaacgaaaatattttgttatcaaaagca
aaaataataacatctaCCTTATTCCCAAGAGGGTCCCAAGAgcaattaaa
aatgacaaactttttctctttgtttggaACGCAATATTCTATCAAAACAA
TGAGAAACGataaattgttgttttgattgcGAGAGAAAATACAAGTATCA
GATTGGACGCGATAAAACGAGCCGCAACGAGAGTTGTactaacgcacttt
gtaataacgccacactttgtaatacctgaagcactttgtaataaaaacTG
ACGCACTTTGTAATGAATGACCTAAcgcactttttaataaaaattaacgc
actttgtaataccaaaagctgacgcactttgtaataacaCCCTACGCATT
TTGTAATACAAAAAAgctgacgcactttgtaataacatctgacacacttt
gtaataattTAGAGAATTTAAACGTTTTTTACCACCTGataacacaggaa
aaaattttcgatttccaaggttggaaatctcaaattttcttagttggaaa
aaagataaaatccaatggaaaatccaacctgaaaatgtgggacattgtcc
aaggttggaaatgttgcattttccatggcttggaatNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaa
aaaagccaaaatccaagcttaaacaaggttggaatttttaaaaattcagt
tggaaaaaagccaaaatccaagcttaaacaaggttggaattttttaaaat
tcagttggaaaacaaggttggaattttcgaaaatctaggttgaaaaaagc
caaaatccaaatttaacNTAGCTacacatcaaaacagttttgagcgaaaa
atcgcttgtggttttctcaaaggagcatgcgcagaaaatggttagaaaaa
cgtaatttccacatggattttttaacgttttccaaactgtttggagaaac
acaaatttccaacccaaaaagtctagttttccaatcgaaagggttgcaat
ttcacaaaaatgtaatttccacatggatttttaacgttttccaaactgtt
tggagaaacacaaatttccaacccaaaaagtctagttttccaagaaaggN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtataaaaccaaaa
tttccaacccaaaaatatcgaatttccaaccttggaaatcgaacattttt
tcctgtgtaatgTCATCCATTTTGCCACCGCTTAAAAAAAAGGACTCCTC
TAACTTTTTACCACTTTAATTTCAtctatttcattttattttttctcgtT
TGTATTAAACTTTTGAGCAAGCATAATCGTCTGTATTTGACATTCGAAGA
ATACAAAGaattttatctataagaattgcTCAAGGACCAAGCTAAAAGTT
AATatgatgaaataaaattttaaacaaatttagCTTACAACCTACAATGG
TGGCCAAAATATGATTATACCTTTTATGACATTACAGTATTTCCAAAAAG
GATACTTTTCGCATATTCTGTCTGCAGGGAAGATAAAAAGGCTGTAGACT
TGGATAGTATTCGAATAGCGCTTCGTCGTGCAAACGTCatgattattact
tctctcatttgaccgaaattcaatcccacaatccttttcgtcttatttca
aaagtcgtgaaagttattactttttctttgtaattgagtgtaatttgcgt
gcaagTGTAATAAACGCAAAGtgtgatgggattgaatttcggtcaaacag
aaaaatcaatgtctatttttagattcgcgacGGTATGCTATTGAATACaa
taaaacctctaattaacagacactctaaaaggcggataCCTCTGATTAGC
CGACAATTCTATTTTCCCCGGCCATTTCCTATTTAaatcaaatcctcata
aaagaTTGGCGGACCCTCAATTAACGGACCCTCCGATTAGCGTTTAATTT
CAATTCGAATTGAATGGCGGTTTTGTGCTCTCCTCCTGCAATAACTAATG
TTAGCTATTTGAGGGGCAGAGACTACTATATGTTAGAGAAGTACCtaaag
ttttttctcatttttgcttTCACCAAATAGGTTACACCTTTAGACACCAT
ATTGGTTTTAACTGAATGGAAGTAAGACGACGTTCCCCTAGCAACAGTGT
AAACATGGAATCGTTACCTTCGTCACAAGAATCTACTCCCGAAATGCCAC
GCAAAGCGGATGATAAACATGAACGCGCGCCTGAAAACGAAGACGAACGC
AAACAACTTTCAGATGATTTAAGAAACTTGGACGAACAATCGGCCCGCGC
GGCCCGCATGTTGGTTTATAAAAGGAATAAATATGTGTTTTTGTTACAAT
CAATGCTCCTTGGGATTTCATACTCCATCATTTGGCCCACTTTATTACCG
TATATTCTTGAAGATTCAGCTCAGGTCAGTGTATTATGATATATAACAAC
CTTGTTCActgtgtattatcagctttctgatgcttactgatagcgctaga
taataccctggcattgtctgTTTTTCGAATGCGTAAGATGACgtaattca
aaacaaaacgtcagatttcatttgtttctggatttgaaaccattgcatta
CAGTGCAACTTTATAACGTCAGATTTTTTCATGGCGTATTGTTTCGAGAA
GTTCCTTCTCTGAGAGGGGGGACTcgcgcatcagccaacaccagggtttt
ctctggcgtccataagtaacgtaaataTATATTGGTTGAATATACAGTAG
TAACCGTTAACAATCCaacccagttggcacacaacgttgtttcaacgtcc
atctaacgttatatggacgttatgaacattagataaacgttgaaacaacg
ttgtgtgccagctgggaaaagCTCAAATGCAAAAAGTAGTGATAGTAACG
CTGTACAGTCactatgaaaaaaaacaaaaacaaactggTGCATAGTTCAC
AAAAGACATTTGCAGTGTTTTTTTAGACGGTCGGCTTGATTCGTCTCTCA
CATTATTCACAAATATTTGCATTTGATTATTGAGCAAATTTTTTATCGTT
AATGGCAACTACAGTAGGTATTTatttagcctgtaccaaactcttcttcg
ctgaGTGAAAAGATAACGCGAAGTTTGGTTTGTTACGGTTACGTAACATT
CCATGTCTCagacattagcgagtttatgtatttgcacttttgaggacggt
gaAGCGGTTTGGAAAAACCCACAactctgacccgcaaaatcgaggacggt
gaAAGtgttgatttaccgtcgtcctcggctggttaggatctagtcaaatt
agaaccttaccgtcttcgtcactgaaaaacacacatacataaactcggga
TTTTTTCGTAAGTGGTGGAGGATAgctatttttagcattcaatTTAGCTC
AACTAAAGTGACCTTACTTTTAACGCATCAATGCAATGGTATCTTTCATT
TCTAAAAAGAGCACTCCTACGCTTTTGTTTTCTCGGATTTTATCCCAGAA
AACTGACACAGAATCTCGCTTGCCAAAACAGACtggcaagttttttcaaa
atatatgaaAACGTCCCTTGGGCGGGGTGGTACACAGTAGTTATTTGTTT
CAACATCAATTTCTTTCAGAGGTAGGAAGCTTTTAAAGCGGGTTGTCCAC
TTTGTATAAAGAATGTAAGAATGTTCTTGAGGGATATCGacatgacgtca
cttttaacttttgtAAAGTTCTAGCAGGATATCATGAGCCCCGCTGGGAG
GGGGCATGGCCCTCACCTTTTTTGCAgactatttttttcaaaagtcaaaa
acatttttcatgtttttttttatgttgcTCTGCCGTTGTGGGTGACAATC
TTTTCCCAAAAGTTTTGATCCTCATTTCAAACAGCTCTCCAGGGGCCCAT
GACATTCACAGCAGATAGAAGAACTGACATCAGTTTAATGTACCTTTTCG
Actgtagactagtaaaccacgtcgttgtatttcgctgcagattaaacttt
caaatgggattaattttttttatatgttcacagtccttttttcgcaccta
tagacaatagaaaaatgtgtcaaaaaaggcctgggacagttttagtggga
taagcggacaaaaaaatgcccgcgcagcaattagcggctacggtcgaaaa
ggtgtatgcAAGACATTTAAGGATGATGGTAAtgagactgggttcgagtt
tgctAGGAAGAATGACGTTGAAATATATGCAGTCGTTTCTTAGACAttct
aaaaaaacaatgaatttcATCCTCATTTTTTTTGTATACTTTGTGTTAGC
CAAAACCAATAACAATGCTCAATGTTAATGATAACAGAGCTTTATACTAG
TTTGAGTACtctcatttttttgtaaattcaatACCAGACCCCTCAAGCCG
ACCGTGCCATCAAAATTAATAGCGTatataaaagttttattttctaaaag
tttcatttactttcgtttttagaTTTACAAGTCAGATCAATCGCAAGTTG
TCAGTCGTATTTTGTATGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016920-exon-sc0000254-1491911889:291567..291754 | TCONS_00016920-exon-sc0000254-1491911889:291567..291754 | Clytia hemisphaerica | exon |
| TCONS_00016920-exon-sc0000254-1510915933:291567..291754 | TCONS_00016920-exon-sc0000254-1510915933:291567..291754 | Clytia hemisphaerica | exon |
| TCONS_00016920-exon-sc0000254-1575043694:291567..291754 | TCONS_00016920-exon-sc0000254-1575043694:291567..291754 | Clytia hemisphaerica | exon |
| TCONS_00016920-exon-sc0000254-1491911889:295897..296240 | TCONS_00016920-exon-sc0000254-1491911889:295897..296240 | Clytia hemisphaerica | exon |
| TCONS_00016920-exon-sc0000254-1510915933:295897..296240 | TCONS_00016920-exon-sc0000254-1510915933:295897..296240 | Clytia hemisphaerica | exon |
| TCONS_00016920-exon-sc0000254-1575043694:295897..296240 | TCONS_00016920-exon-sc0000254-1575043694:295897..296240 | Clytia hemisphaerica | exon |
| TCONS_00016920-exon-sc0000254-1491911889:298289..298338 | TCONS_00016920-exon-sc0000254-1491911889:298289..298338 | Clytia hemisphaerica | exon |
| TCONS_00016920-exon-sc0000254-1510915933:298289..298338 | TCONS_00016920-exon-sc0000254-1510915933:298289..298338 | Clytia hemisphaerica | exon |
| TCONS_00016920-exon-sc0000254-1575043694:298289..298338 | TCONS_00016920-exon-sc0000254-1575043694:298289..298338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000254 | supercontig | sc0000254:291567..298338 + |
Blast
The following BLAST results are available for this feature:
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