TCONS_00016858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016858
Unique NameTCONS_00016858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016858 ID=TCONS_00016858|Name=TCONS_00016858|organism=Clytia hemisphaerica|type=transcript|length=598bp
tgttcgatgaaatttaacgtccccgtcaacaagaaactctcataaacgac
attCTACTATATTCGATattttattcgatgaaaatcaaccttagtcgaat
tagagagcataaATTGTAGTttagattttcatttcatttagcTAAATTCA
GATTTTTAGAAGTTTATAATagcacatttttttatatattttaaaattac
aagattttcaagaaaatttacGTGGCAATATATAATTTTCACGGTTGTTT
AAGCCAATCTAAAAATAACTAATTCTTTGATTACAGAGAAGGCTCTCAGT
GAAATCATGGCTATAGAAAAAACTATAGCAGTCTTCAAggaaaaataatg
gaaattcAACATCCATTTCACGCTATTTGGTAAACGTAATTTGTATGTTC
TTGTCCCATGCAAATGGAATCCGTCTTGCCGCCTTTTTCACACGTCGTCG
CGTATTGGTCGTCAACACATTTCCCTGAAGCTCCATATTGGTCGAAAGTA
TGAGAGCTGCCACTCATACAGAGACCATAGTATTGCAGACCAAAGTATTT
GTAGCCTTGATTCTTTGCCTTCTTTGCACATTCACAAACCAGTCTagt
Run BLAST on NCBI

transcript from alignment at sc0000253:197007..197684+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016858 ID=TCONS_00016858|Name=TCONS_00016858|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at sc0000253:197007..197684+ (Clytia hemisphaerica)
tgttcgatgaaatttaacgtccccgtcaacaagaaactctcataaacgac
attCTACTATATTCGATattttattcgatgaaaatcaaccttagtcgaat
tagagagcataaATTGTAGTttagattttcatttcatttagcTAAATTCA
GATTTTTAGAAGTTTATAATagcacatttttttatatattttaaaattac
aagattttcaagaaaatttacGTGGCAATATATAATTTTCACGGTTGTTT
AAGCCAATCTAAAAATAACTAATTCTTTGATTACAGAGAAGGCTCTCAGT
AAAATCATGGCTATAGNTTCACGGTTGTTTAAGCCAATCTAAAAATAACT
AATTCTTTGATTACAGAGAAGGCTCTCAGTGAAATCATGGCTATAGAAAA
AACTATAGCAGTCTTCAAggaaaaataatggaaattcAACATCCATTTCA
CGCTATTTGGTAAACGTAATTTGTATGTTCTTGTCCCATGCAAATGGAAT
CCGTCTTGCCGCCTTTTTCACACGTCGTCGCGTATTGGTCGTCAACACAT
TTCCCTGAAGCTCCATATTGGTCGAAAGTATGAGAGCTGCCACTCATACA
GAGACCATAGTATTGCAGACCAAAGTATTTGTAGCCTTGATTCTTTGCCT
TCTTTGCACATTCACAAACCAGTCTagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009438XLOC_009438Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016858-exon-sc0000253-1491911889:197007..197297TCONS_00016858-exon-sc0000253-1491911889:197007..197297Clytia hemisphaericaexon
TCONS_00016858-exon-sc0000253-1510915933:197007..197297TCONS_00016858-exon-sc0000253-1510915933:197007..197297Clytia hemisphaericaexon
TCONS_00016858-exon-sc0000253-1575043694:197007..197297TCONS_00016858-exon-sc0000253-1575043694:197007..197297Clytia hemisphaericaexon
TCONS_00016858-exon-sc0000253-1491911889:197378..197684TCONS_00016858-exon-sc0000253-1491911889:197378..197684Clytia hemisphaericaexon
TCONS_00016858-exon-sc0000253-1510915933:197378..197684TCONS_00016858-exon-sc0000253-1510915933:197378..197684Clytia hemisphaericaexon
TCONS_00016858-exon-sc0000253-1575043694:197378..197684TCONS_00016858-exon-sc0000253-1575043694:197378..197684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:197007..197684 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.344475	0	0	0	0.267183	0	0.19122	0	0	0.186092	0	0.149803	0.105433	0	0.0274629	0	0.168819	0	0	0	0	0	0	0	0	0.170324	0	0.467264	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top