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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016854 ID=TCONS_00016854|Name=TCONS_00016854|organism=Clytia hemisphaerica|type=transcript|length=765bp
TATATAATGTGACAATTACCTGAgtgataaagaaaaacaaagccATATAA
ACACCAGGAATGTTCACATAAGTTACGTGCCAAGCACCAATGTTGAAATC
GACCGTCGTAAACATGAAATTAACTCCAGGTCCAACAATGAAACCAAGTG
CAAATGCCATTCCCATGGAAGAAAATCTACTGAGGACTTCTGAATCTGGA
TAACATCTTGCAATCTCTCCAGAAATCACCGACCTGAGTGGCCCATCAGC
GCCAGACACCAATCGGCCGAAAACCAAGAACCAAGGCGAGAAATGGAAAG
CATACATTATGTTACCGATGATAACTAAGGTGTTGCAGATCAGGAAGATT
TGACGTACTTTACGCGTGCGGTCGACCCACCGTCCGATGAAGACTGATAA
GATAACAGCTGCAATCAGGTACGAGGAAGCTACTAAGCTGTAGAATAGCT
TTGGCTGATCTGTGTTGATCATTTCCTTGATGTACAGCCAGAGTGTGAGA
AATGTCACCGAATATTCCATACCTAGCATGATACACTCCAAGGTGAAAGC
TTTGGTTGTCCAATAACGTTTGCGTTCCCATTGTTTGATGTCTACAGGCC
CGTCACTCACTGCTTCTTTATCTAggtttttgtacattttgttggTAAGA
TTAAAGCTACGTATCTAGTATTCAATATCTAGTATCgagtttcaaatttt
aaatggaGAATTTCCAGCTACAGAGATTTCATGTCATaaatttcaatgtt
tcaaaTGAAAGCACA Run BLAST on NCBI transcript from alignment at sc0000253:185545..191400+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016854 ID=TCONS_00016854|Name=TCONS_00016854|organism=Clytia hemisphaerica|type=transcript|length=5856bp|location=Sequence derived from alignment at sc0000253:185545..191400+ (Clytia hemisphaerica)
TATATAATGTGACAATTACCTGAgtgataaagaaaaacaaagccATATAA
ACACCAGGAATGTTCACATAAGTTACGTGCCAAGCACCAATGTTGAAATC
GACCGTCGTAAACATGAAATTAACTCCAGGTCCAACAATGAAACCAAGTG
CAAATGCCATTCCCATGGAAGAAAATCTACTGAGGACTTCTGAATCTGGA
TAACATCTTGCAATCTCTCCAGAAATCACCGACCTGAGTGGCCCATCAGC
GCCAGACACCAATCGGCCGAAAACCAAGAACCAAGGCGAGAAATGGAAAG
CATACATTATGTTACCGATGATAACTAAGGTGTTGCAGATCAGGAAGATT
TGACGTACTTTACGCGTGCGGTCGACCCACCGTCCGATGAAGACTGATAA
GATAACAGCTGCAATCAGGTACGAGGAAGCTACTAAGCTGTAGAATAGCT
TTGGCTGATCTGTGTTGATCATTTCCTTGATGTACAGCCAGAGTGTGAGA
AATGTCACCGAATATTCCATACctacaaaaaagaagaattgattTGTTCA
AAAACTGTTCGGGATGGTTAATATTGACTGATGAACGTCATTGAAAAGGA
TTGCTATCAGAGTAAGGAAAAACAAAGTAACTGGATTCGAATCAGTATTT
TATGATTCAAAACATACCTAGCATGATACACTCCAATGTGAAAGCTTTGG
TTGTCCAATAACGTTTGCGTTCCCATTGCTTGATGTCTACAGGCTCGTCA
CTCCCTGCTTCTTTATCTAggtttttgtacattttgttggTAAGATTAAA
GCTACGTATCTAGTATTCAGTATCCAGTatcgattttcaaattttaaatg
gaGAATTTCCAGCTATATATGAGTTTTCATGTCATAAATGTTTCAAATGA
AAGCACATGAAAGATTGATATTGAATCTAACGAACAGACCTTGCACTTTT
TATAGGTGTCTACACACGTTCTTAACACCTTATAAGGATATCCGGAGGTA
CGGCAGACAGACTTGTCAAACTGGTTTGACTAAGATCAACGGACTTTTAT
TGTTAAGAAATATGTGATTCagcgttttcattttattaatttcaattaat
ttcaattaatttcaattaattaacattAACTGCTAAACGTAGGAGGTCCA
TTTGGGGCTAACGACACTTCCGCTAGGCCCCAGAACGACATAACATAACA
CACAAAATGATTTCCGTCCTGGTCCTAACGACCATAACTTACGAAATTGC
CTATCCGACAAATGGTATAAAATCACCCAAAAATATGACCTAGAGAGGAA
AAGAGAAGAGAAGAGAAGGAGACACATACGAAAACAACAAACACCAAGAG
TCGCCGAGAAGCACGAGTTTAACATCCTTGTTTTTACCGTCTTTGGAGAA
GATTTAGTTAACGTCGAAAGTATCTTTGTTGGAATATTCTGAACTTTTTA
TATGGTGTTGGATTATCATTTAAATAACATGTAGaggtttttcacaaaaa
aacttaTTAATGATTGTTGGGAAATGGACATCAGTTCATCAGTTATCAGT
ATTTGGTTAAATTTGTGATTTTCTAAAACCATTTACTCTATACTAAAATA
TACTTAATTTTGTATCTCAAAATAGAGATCAATCTTGTCAGTTTCTTGTG
TCTTGGCCTTTCTATATATTCATATATAGATCATGCGAAAGCTACCTGGT
CGAACTTTAGGAAAAATTAGGGCCTGACCATTTAGCTTTTCCTTCTTAGT
TTTCACGCGTGTCAAAAAATTACCACACAAACAATAAAAACCACTTTGct
tatttttgtttgaagaagaaaatgaaagcgaCTGGTTTCTAATGTTTATA
TTTGTGATAGGCTTTTGATGTTGGGGCTTTAGCCAATCACCACgcttaaa
agctcatttaattttcatttcaaattaagATGAGAAAAATCAATGCTGTG
TGTcaacctgggcagattctcttactGTGCCATGACTTttactttgaaaa
tatttatcggtatcagaatctgctcggaaATTACTTCAACACcagactta
agggctctgaccatagtcaaaaaaaTTCGTTAATGGATATGttgataaaa
ctttttttttgttttccttgaCACCTATAACAAAAAACTGTCTTTACAAA
TTGTTTGGTGATTTATTGTGTcaaaagtaattaagaatttaattacacAA
ATTACataatgaactttaaaaagacgttaataaaatcttatatattaccc
tcttttacaaaaagtgctgaATTTCAATGcgtaattaacctttttctttC
GATAATTTTTTAAACTGTCTGCGAAGAATTGatctatttgaaatttttcg
gaaaaatcttCTGAATTGGtgtatcaaaaattatttaaatgcttttcttc
gaaaattaaaTGCTTTTCTTCGAAAAAAAATGGCATAGAAAATTGGTCGA
AAGCCggtattttgaagattttgagacaaagaagcttttacaaaaatttt
ccgaaaatctatttttagtttGGTTGAATATACACCTTCTGACGcaaaag
tattttcaaaatgttttttctctgCCGAAAATAAGGTCCCCAAAGTTTAG
ATTCTCCTCTTTGCAAAAGTCTTCGTTTTATTCTTCTTGGATCCATATAA
TAGCAATCAAATCATGTAATGTAAATCATGTAAATAAAGTGAATCCAAAT
GCTAGAGTCAAATCTCCCTATCAAGGATTCGACGCTCACTTACTTCTTAC
ATAGGTTGCGTGGcccgcgtggttttcatacaaacaCAGCAACATTTACC
AccagaaaatataaaaaatttaaaacgcCAAAACAAAAAAGTGCCAGGTT
CAATGAAGCACAAATTTTAAAGGCTTCATATTTTCTTGTTTGATAGGTTG
AAGATTCTCCTCTAGctttcggcttgaaactcaatgtcaAATAATTATTG
ATGAAAATCTTAAATCATGACAGCCTTGTTCTAtatgttatttaaaaaac
ttattttttcaatgattaTCTTTTGTGGAAAATAATTACAGTAGATACTT
TAAAATGATAcaaatttactttaatttttttgaaaatatatgtGCTTTGC
AGAGCTCAAAAGAAGGTGCCTGACCAATCAATGGACATTCAAATGACAGA
AGCTATAggtttcatttgatttttttctttttctaggcATTTGCTTATAA
TTATAAAATTTCACATGTTATAATTTTTCTATATTGTGCCATTTGTTATT
GCCACTTTTTTCTATTCCACTAAGGAGTATCATTTTCAAtgagtttctta
taaaaaatattattatctAGAAAAAAATGTACATTGCAGATATGCTATCT
TGATCTATATACAATTTATACAATTAAAATAGTGCAAAAAAGTTATAACT
ATTATAAAATTTACTTAATACAAATCACGGGAGCTCTCAATGATTTTCTC
CGTTTAATCAAAATTACTAAAGTCAGTAACGATACAATAACTCCAACCCC
ACATACATATTCAATCCATTCAAACAAAgctgctgatgtcagcaaagcTA
ATAAAGCTCCGAAGCGTGACATTGAGAGTCGAAGGCTCTCAGAGAATGTT
TGTACTTTAGAGCTGGTCATCTTTGCCATAACACCAACCAGGAATACTTC
ATCCATAATAACCACAATGGCAAATAAGGTGCCCCAAATGATCCATAAGA
CAATATTGACATACATTTGGGAATGTTGGAATCGCATGTAGATGAAGATG
AGCTCCATTATAGCTAAAGAGATCATACATATGATTGAGAGATTGTACAA
CATTCGATCAGAGAATGATTTTAAAGACATTATACCAAGAATAACAGCTG
AGATGCAACCGAAACCGAAGACAATGCCATTGAGTTCTGTAATGCTCATC
TCCATAACATCGACCACCATAATTGGCAACCACATATCAAATGCAACCAT
CCAGTACCAGAGAATGAAGGTGAGCGCGAGGATTAAGAGGGAATCTGCAT
TGGTTAGGATGGTACAGAGGATATGGTCAGCTTTGGATTGTTCAGCACTG
GATGTCGATGATGAGGAGGAGGTAGAGCTGTAGTTTGATGAGGAGCTGGA
TGTTAGGGATGAATCTTCAGTGATTACTGGAACAACTTGATTGGATGCTA
ACTTTGGGAATGCAAAGGGTCTTATAAACATACCAGACATTTCGAGTCGT
TGCATTTTGAATTTGTTACGTCGTTCTTGTTGATTGTCATGTGATGTTTC
AATCAAAGTGTCATCGTAAAAGTTGATGGTTGTTTCTTTTGGTTTGACTG
GAATCTGAACTGATTTTGTGAACCGATCTGATTGTGATTGGGTATTAGCG
TTGGATTTAGCATAAAAAAAGCTTGTTGTAACTGGTAGTGGTTTGATATC
TCCTGGTAAAATTGGTTTAAGGATGGCGTCAGCTTTGAGGTCGTACTCAC
GTGAGAGATCATGAACCATGAAGAAAACACATATCTGTAAAAAGACAGTC
AGTGATCATTAAATAAAAACTACTTTAATTCAGGATCTATAGTACATTAA
AGTAGACTTTAAGACTAAAATCCTAATACGAGTCCAATTTCGAACAAagt
atttttgggaaaaaatggttatttcttcatttttcgcttttttATAGTTG
ATAGAAAGATTTGCAATACCAAGGTATTGGTAAGGTAGATgaattctttt
ttataatatGACAATTACCTGAGTGATAAAGAAAAACAGTGCCATATAAA
CACCAGGAATGTTCACATAAGTCACGTGCCAAGCACCAATGTTGAAATCG
ACCGTCGTAAACATGAAATTAACTCCAGGTCCAACAATGAAACCAAGTGC
AAATGCCATTCCCATCGAAGAGAATTTACTGAGGACTTCTGAATCTGGAT
AACATCTTGCAATTTCTCCAGAAATCACCGACCTGAGTGGCCCATCAGCA
CCAGACACCAATCGGCCGAAAACCAAGAACCAAGGCGAGAAATGGAAAGC
ATACATTATGTTACCGATGATAACTAAGGTGTTGCAGATTAGGAAGATTT
GACGTACTTTACGCGTGCGGTCGACCCACCGTCCAATGAAGACTGATAAG
ATAACAGCTGCAATCAGGTACGAGGAAGCTACTAGACTGTAGAATAGCTT
TGGTTGATCTGTGTTGATCATTTCTTTGATGTACAGCCAGAGTGTTAGAA
ATGTCACCGAATATTCCATACctacaaaaaagaagaattgacttgttcaa
aaattgttcggGATTGTTAACCcggaggggggtactagggttgcgagctg
cgGGGGGGGGGTGTcaccgactttcgacccttggaCCCATACctggacta
aaaaggagaaaacaaagaaaaatcttgTGAGTTTTGCAATCCTTACTGGG
ACAAATTtcaccaattttgaccaaatttcgatctttctgggggtaaaaag
ttgaaattttcctatttttccgactgttagcgggactgaaatttgatttt
cagatttttccaacccttagcgggactttggaaatcgaAAAAAGGGTTGA
TATCAAAGTaaggaaaaacaaagaaactggATTCGAATCAGTATTCTATG
ATTCAAAACATACCTAGCATGATACACTCCAAGGTGAAAGCTTTGGTTGT
CCAATAACGTTTGCGTTCCCATTGTTTGATGTCTACAGGCCCGTCACTCA
CTGCTTCTTTATCTAggtttttgtacattttgttggTAAGATTAAAGCTA
CGTATCTAGTATTCAATATCTAGTATCgagtttcaaattttaaatggaGA
ATTTCCAGCTACAGAGATTTCATGTCATaaatttcaatgtttcaaaTGAA
AGCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016854-exon-sc0000253-1491911889:185545..186062 | TCONS_00016854-exon-sc0000253-1491911889:185545..186062 | Clytia hemisphaerica | exon |
| TCONS_00016854-exon-sc0000253-1510915933:185545..186062 | TCONS_00016854-exon-sc0000253-1510915933:185545..186062 | Clytia hemisphaerica | exon |
| TCONS_00016854-exon-sc0000253-1575043694:185545..186062 | TCONS_00016854-exon-sc0000253-1575043694:185545..186062 | Clytia hemisphaerica | exon |
| TCONS_00016854-exon-sc0000253-1491911889:191154..191400 | TCONS_00016854-exon-sc0000253-1491911889:191154..191400 | Clytia hemisphaerica | exon |
| TCONS_00016854-exon-sc0000253-1510915933:191154..191400 | TCONS_00016854-exon-sc0000253-1510915933:191154..191400 | Clytia hemisphaerica | exon |
| TCONS_00016854-exon-sc0000253-1575043694:191154..191400 | TCONS_00016854-exon-sc0000253-1575043694:191154..191400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:185545..191400 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005215 | transporter activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005215 |
transporter activity |
Blast
The following BLAST results are available for this feature:
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