TCONS_00016869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016869
Unique NameTCONS_00016869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016869 ID=TCONS_00016869|Name=TCONS_00016869|organism=Clytia hemisphaerica|type=transcript|length=1316bp
CGTCAATTTACACAATTGCTCAAACATACTAAGCACACATTAAATGTAGT
GACGATACTCTAAAAGATTTGTCCAGCTTTTAAGTGTGTTGTTCCACATG
CTTCAAAGTCAGACAAAGAGCTTCCCAAATATTTGTCTTGGAATTTATGC
ATTTAAAAAGCACCGATCTAACTAACTAAGACATTGCTTCATTATAAAGA
AAAGCATTGTACAGAAGATATCTCACACTTGCACACCATGGGACAAACGG
TTCTTCGTATTGCTAGTCTCATCCTCTTTTGTGCATGCGCCCTTGCAGAA
GAGGAATGCACTTTGATCGATGATCTTAAAAGACTAAAAATACAGTCTCG
CCTCAATCGTCATTTAGTGGGACATTGGAAAATGGACGAGCAGGAGAAAA
ACAATGTTGATGATGACTCTGGTAATGAACTTCATGGTATGGCTACATCG
ACAACTAAAGTATCTCGTGGCAAATTCACTCGTGGAAGATATTTCTCATC
GACCAGTGATAatatcattgtgccaaaaagtCCTCTCATGGATTTCGGAA
GTAACAGTTTTTCATTCGCTGGTTGGATCAAGGCAGAAAATTACACTTAT
CCCCACACAGCATTTTCAGCCCGTCAAGGATTTGGTTGTTACTTTAAACC
AGGGAGACCAGGATTCACCGCAGGTTGGGAAATAGGTCATGGACATTCAG
TGGGTAATGATAAAACCAGTATCTGTATACGAGATGATTCTCAAAATTAT
GTTCGTAAATATATCAAACATGACGCAGGGTTCCAGGGAGCCGCTCTTTT
GAACAAGTGGGCCCACTTCACAATTGCCTTTGACAGACATGCTCGACGCG
TCTATCTCTACATCAATGGGAAGAAACAAGACGACTACGCTGACATCTCC
AAAGTCAAAGGCAGCATCAACAATGACAAACCATTGAATTTTGGCACACT
CTACGGCTGGAAAACTAAAGGTACAATCGATGACTATAGAATGTACAACA
TCGCTTTGAAAAGCGAAGAGGTCGCAGTCATATTCGAGAATCATAGACTG
TAAAATAGTTATGTGGAATTTTATTTTACAATGAATACGGTATAGATTGT
AAAACAGGTCACttgtttttaaagatttcaGTCAGAAACAAGATTcgcaa
aaatgcgactaaatatttccttaaaaatgaaggtcattattgacatatac
tagcaagtagctgtcgctaagaatgccccgcagagcttcctatcgaaata
tccctaagtaagcaaaattacgcttgtgtagattttaaatttgttttatc
gataaaatttaagttg
Run BLAST on NCBI

protein sequence of TCONS_00016869-protein

>TCONS_00016869-protein ID=TCONS_00016869-protein|Name=TCONS_00016869-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MGQTVLRIASLILFCACALAEEECTLIDDLKRLKIQSRLNRHLVGHWKMD
EQEKNNVDDDSGNELHGMATSTTKVSRGKFTRGRYFSSTSDNIIVPKSPL
MDFGSNSFSFAGWIKAENYTYPHTAFSARQGFGCYFKPGRPGFTAGWEIG
HGHSVGNDKTSICIRDDSQNYVRKYIKHDAGFQGAALLNKWAHFTIAFDR
HARRVYLYINGKKQDDYADISKVKGSINNDKPLNFGTLYGWKTKGTIDDY
RMYNIALKSEEVAVIFENHRL
Run BLAST on NCBI

transcript from alignment at sc0000253:12495..14178-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016869 ID=TCONS_00016869|Name=TCONS_00016869|organism=Clytia hemisphaerica|type=transcript|length=1684bp|location=Sequence derived from alignment at sc0000253:12495..14178- (Clytia hemisphaerica)
CGTCAATTTACACAATTGCTCAAACATACTAAGCACACATTAAATGTAGT
GACGATACTCTAAAAGATTTGTCCAGCTTTTAAGTGTGTTGTTCCACATG
CTTCAAAGTCAGACAAAGAGCTTCCCAAATATTTGTCTTGGAATTTATGC
ATTTAAAAAGCACCGATCTAACTAACTAAGACATTGCTTCATTATAAAGA
AAAGCATTGTACAGAAGATATCTCACACTTGCACACCATGGGACAAACGG
TTCTTCGTATTGCTAGTCTCATCCTCTTTTGTGCATGCGCCCTTGCAGAA
GAGGAATGCACTTTGATCGATGATCTTAAAAGACTAAAAATACAGGTTGG
TTTCTTCATTAAACACTTTAGCTTTATAAATTATCTCTATAACTCGAACT
AATTTGTGTTCCATTGTGCGTGTTCAAATAATGGAGACTCCACTGTATAT
ACAACGGCTGGGGATTTTCAAAAATTACAGTGACTGTGTTACAGTGGGGT
GAGAAAGTTTATGAACTTTTTTCAATTGGATGAATCTTCATGGTACTTTT
TTCACTGGGACGAGTTCTTAATTAACGTTTGCTAGTAGAAGGGGTTCGAC
AACCGGTTCTGTGATACAGGTTGCATATTTTGACACTGATTAGAAACTCT
TTTTTTTAGTCTCGCCTCAATCGTCATTTAGTGGGACATTGGAAAATGGA
CGAGCAGGAGAAAAACAATGTTGATGATGACTCTGGTAATGAACTTCATG
GTATGGCTACATCGACAACTAAAGTATCTCGTGGCAAATTCACTCGTGGA
AGATATTTCTCATCGACCAGTGATAATATCATTGTGCCAAAAAGTCCTCT
CATGGATTTCGGAAGTAACAGTTTTTCATTCGCTGGTTGGATCAAGGCAG
AAAATTACACTTATCCCCACACAGCATTTTCAGCCCGTCAAGGATTTGGT
TGTTACTTTAAACCAGGGAGACCAGGATTCACCGCAGGTTGGGAAATAGG
TCATGGACATTCAGTGGGTAATGATAAAACCAGTATCTGTATACGAGATG
ATTCTCAAAATTATGTTCGTAAATATATCAAACATGACGCAGGGTTCCAG
GGAGCCGCTCTTTTGAACAAGTGGGCCCACTTCACAATTGCCTTTGACAG
ACATGCTCAACGCGTCANAAACAAGTGGGCCCACTTCACAATTGTCTTTG
ACAGACATGCTCGACGCGTCTATCTCTACATCAATGGGAAGAAACAAGAC
GACTACGCTGACATCTCCAAAGTCAAAGGCAGCATCAACAATGACAAACC
ATTGAATTTTGGCACACTCTACGGCTGGAAAACTAAAGGTACAATCGATG
ACTATAGAATGTACAACATCGCTTTGAAAAGCGAAGAGGTCGCAGTCATA
TTCGAGAATCATAGACTGTAAAATAGTTATGTGGAATTTTATTTTACAAT
GAATACGGTATAGATTGTAAAACAGGTCACTTGTTTTTAAAGATTTCAGT
CAGAAACAAGATTCGCAAAAATGCGACTAAATATTTCCTTAAAAATGAAG
GTCATTATTGACATATACTAGCAAGTAGCTGTCGCTAAGAATGCCCCGCA
GAGCTTCCTATCGAAATATCCCTAAGTAAGCAAAATTACGCTTGTGTAGA
TTTTAAATTTGTTTTATCGATAAAATTTAAGTTG

Coding sequence (CDS) from alignment at sc0000253:12495..14178-

>TCONS_00016869 ID=TCONS_00016869|Name=TCONS_00016869|organism=Clytia hemisphaerica|type=CDS|length=2448bp|location=Sequence derived from alignment at sc0000253:12495..14178- (Clytia hemisphaerica)
ATGCTCGACGCGTCTATCTCTACATCAATGGGAAGAAACAAGACGACTAC
GCTGACATCTCCAAAGTCAAAGGCAGCATCAACAATGACAAACCATTGAA
TTTTGGCACACTCTACGGCTGGAAAACTAAAGGTACAATCGATGACTATA
GAATGTACAACATCGCTTTGAAAAGCGAAGAGGTCGCAGTCATATTCGAG
AATCATAGACTGTAATCTCGCCTCAATCGTCATTTAGTGGGACATTGGAA
AATGGACGAGCAGGAGAAAAACAATGTTGATGATGACTCTGGTAATGAAC
TTCATGGTATGGCTACATCGACAACTAAAGTATCTCGTGGCAAATTCACT
CGTGGAAGATATTTCTCATCGACCAGTGATAATATCATTGTGCCAAAAAG
TCCTCTCATGGATTTCGGAAGTAACAGTTTTTCATTCGCTGGTTGGATCA
AGGCAGAAAATTACACTTATCCCCACACAGCATTTTCAGCCCGTCAAGGA
TTTGGTTGTTACTTTAAACCAGGGAGACCAGGATTCACCGCAGGTTGGGA
AATAGGTCATGGACATTCAGTGGGTAATGATAAAACCAGTATCTGTATAC
GAGATGATTCTCAAAATTATGTTCGTAAATATATCAAACATGACGCAGGG
TTCCAGGGAGCCGCTCTTTTGAACAAGTGGGCCCACTTCACAATTGCCTT
TGACAGACATGGGACAAACGGTTCTTCGTATTGCTAGTCTCATCCTCTTT
TGTGCATGCGCCCTTGCAGAAGAGGAATGCACTTTGATCGATGATCTTAA
AAGACTAAAAATACAGATGCTCGACGCGTCTATCTCTACATCAATGGGAA
GAAACAAGACGACTACGCTGACATCTCCAAAGTCAAAGGCAGCATCAACA
ATGACAAACCATTGAATTTTGGCACACTCTACGGCTGGAAAACTAAAGGT
ACAATCGATGACTATAGAATGTACAACATCGCTTTGAAAAGCGAAGAGGT
CGCAGTCATATTCGAGAATCATAGACTGTAATCTCGCCTCAATCGTCATT
TAGTGGGACATTGGAAAATGGACGAGCAGGAGAAAAACAATGTTGATGAT
GACTCTGGTAATGAACTTCATGGTATGGCTACATCGACAACTAAAGTATC
TCGTGGCAAATTCACTCGTGGAAGATATTTCTCATCGACCAGTGATAATA
TCATTGTGCCAAAAAGTCCTCTCATGGATTTCGGAAGTAACAGTTTTTCA
TTCGCTGGTTGGATCAAGGCAGAAAATTACACTTATCCCCACACAGCATT
TTCAGCCCGTCAAGGATTTGGTTGTTACTTTAAACCAGGGAGACCAGGAT
TCACCGCAGGTTGGGAAATAGGTCATGGACATTCAGTGGGTAATGATAAA
ACCAGTATCTGTATACGAGATGATTCTCAAAATTATGTTCGTAAATATAT
CAAACATGACGCAGGGTTCCAGGGAGCCGCTCTTTTGAACAAGTGGGCCC
ACTTCACAATTGCCTTTGACAGACATGGGACAAACGGTTCTTCGTATTGC
TAGTCTCATCCTCTTTTGTGCATGCGCCCTTGCAGAAGAGGAATGCACTT
TGATCGATGATCTTAAAAGACTAAAAATACAGATGCTCGACGCGTCTATC
TCTACATCAATGGGAAGAAACAAGACGACTACGCTGACATCTCCAAAGTC
AAAGGCAGCATCAACAATGACAAACCATTGAATTTTGGCACACTCTACGG
CTGGAAAACTAAAGGTACAATCGATGACTATAGAATGTACAACATCGCTT
TGAAAAGCGAAGAGGTCGCAGTCATATTCGAGAATCATAGACTGTAATCT
CGCCTCAATCGTCATTTAGTGGGACATTGGAAAATGGACGAGCAGGAGAA
AAACAATGTTGATGATGACTCTGGTAATGAACTTCATGGTATGGCTACAT
CGACAACTAAAGTATCTCGTGGCAAATTCACTCGTGGAAGATATTTCTCA
TCGACCAGTGATAATATCATTGTGCCAAAAAGTCCTCTCATGGATTTCGG
AAGTAACAGTTTTTCATTCGCTGGTTGGATCAAGGCAGAAAATTACACTT
ATCCCCACACAGCATTTTCAGCCCGTCAAGGATTTGGTTGTTACTTTAAA
CCAGGGAGACCAGGATTCACCGCAGGTTGGGAAATAGGTCATGGACATTC
AGTGGGTAATGATAAAACCAGTATCTGTATACGAGATGATTCTCAAAATT
ATGTTCGTAAATATATCAAACATGACGCAGGGTTCCAGGGAGCCGCTCTT
TTGAACAAGTGGGCCCACTTCACAATTGCCTTTGACAGACATGGGACAAA
CGGTTCTTCGTATTGCTAGTCTCATCCTCTTTTGTGCATGCGCCCTTGCA
GAAGAGGAATGCACTTTGATCGATGATCTTAAAAGACTAAAAATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009443XLOC_009443Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016869-proteinTCONS_00016869-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016869-exon-sc0000253-1575043694:13834..14178TCONS_00016869-exon-sc0000253-1575043694:13834..14178Clytia hemisphaericaexon
TCONS_00016869-exon-sc0000253-1575043694:13027..13519TCONS_00016869-exon-sc0000253-1575043694:13027..13519Clytia hemisphaericaexon
TCONS_00016869-exon-sc0000253-1575043694:12495..12972TCONS_00016869-exon-sc0000253-1575043694:12495..12972Clytia hemisphaericaexon
TCONS_00016869-exon-sc0000253-1510915933:13834..14178TCONS_00016869-exon-sc0000253-1510915933:13834..14178Clytia hemisphaericaexon
TCONS_00016869-exon-sc0000253-1510915933:13027..13519TCONS_00016869-exon-sc0000253-1510915933:13027..13519Clytia hemisphaericaexon
TCONS_00016869-exon-sc0000253-1510915933:12495..12972TCONS_00016869-exon-sc0000253-1510915933:12495..12972Clytia hemisphaericaexon
TCONS_00016869-exon-sc0000253-1491911889:13834..14178TCONS_00016869-exon-sc0000253-1491911889:13834..14178Clytia hemisphaericaexon
TCONS_00016869-exon-sc0000253-1491911889:13027..13519TCONS_00016869-exon-sc0000253-1491911889:13027..13519Clytia hemisphaericaexon
TCONS_00016869-exon-sc0000253-1491911889:12495..12972TCONS_00016869-exon-sc0000253-1491911889:12495..12972Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:12495..14178 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166119	0.0987622	0.214944	0.417515	0.416524	0.511263	4.04371	5.38515	12.5272	9.37688	13.3649	8.42595	29.4493	34.7601	72.6314	104.138	11.2671	16.4071	53.7462	88.3396	22.6194	22.3149	14.9507	10.9625	7.65033	33.6299	2.12535	1.8584	38.1526	50.7948
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top