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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016819 ID=TCONS_00016819|Name=TCONS_00016819|organism=Clytia hemisphaerica|type=transcript|length=1801bp
aaattttgtcaatttttagtATCTTAAGAAAGAAAatagaattaaaaaat
aaaagacttaGCTAACCTCGTTCAATTGTCTAACGGTGATTCCTCTTGCT
TCAAGTTCATGTTTTACAGACcagtgaaataaatttttcaagtcTGTCCT
TTCGAAGCGGCAAACGTACATCACTTTCCCTCGATACTCGGGGTCTTCGT
TCAACAACAGAGCTTTTTGTTTGAGAAGGAAACTCTTTCCTGTACTATAG
CCACCGGTGATGATGAGTTTGTTGTAACGTGGATTGTCATCTATGAAGAC
TGGAAGTTGATTCTTGGAATAGAAAACTATGTTGTCTCGGCTTGACACAA
CTTCTATTGCATTGGTGATATAGTCAAACCAAGTGGTTGCANCTCGGCTT
GACACAACTTCTATTGCATTGGTGATATAATCAAACCAAGTGGTTGCGGT
GATTGGCTTTGACACGTGAAGAACAAAAAGCATCATTTGAAGAACCTTTT
TCAATCCTTCGACAGGGTGAATTAAAGGTGCTTCTGGATAAATCATCTCT
GGGAATTTCGACAGAACACTTGCTAACCATTGTTTGATGTCAGTGCGCAT
GTCAATAAAATGATGACTTTGTATTGTGAGCTTTTCTTCTTCTAAACAGA
CAACAGGAAAAAATGTCCAGCCCGGTCCGAACTGGTCACCTAAGTATTCT
TCGAAAAAGCTTAGGTATTCATCAAGTTGATCAACAGCGTGTCCTGCCTG
TTTCATACTCCGCTTCATCTCAACACCGATGATCAACTTTCTTGACCAAG
AGAAAATAAGGAGGTCAAACTCTCGGCTCATACGATTTTTGAggtttctg
aaaatatcagtgtTAGTAAGAATAACAAGGTCCAGCAAAGCATCAGCATT
TATATCGTTGTTTTCCAAGGCTAATTGGTCGAAAAACCAACGCTCAACCT
TCTCACCCCTGACTGAGAAAGACATATCAAATATCCATCGAATTTTTGAA
TCTCTTGGACGATTACTTTGAATAAATTCATTGCTCATTTTATTGCACga
ttttcttccatttcttgaCCTTGAAAATCTTGAGAGCTCTTCTGTAAGCT
CCGACTCTGGTGCGATCCGTCTAAGTTCGCTAATACATCctttaagaaaa
atatcaaactttTCCATGGTGGAGGGCAAGGTAAGtttttcagttttgaa
tttttcagctaTCATATACATGAGCTTGACGTTTGAAAGCCAATCTTGAA
ACTTCTGCTCGTTTATTTTAATGTCATCACTAATGGGGTTCCCATCACTT
TGAGAAGTCATGAAGCTTTCGAATTCACAGGTGAACCAGTGGTAGGGAGA
TGATTCGATAAGGTTATCCAAAGTTTTCTTTAAATCTTTATCGATTTCAA
AATCAAGTACAGAGATTTGCGAATTTGTAGTGTCCATTACACCTTTGTTG
GTAGATAACTTGTTGTCCTGCTTTTCAAATTGTTTCGATGTCCATACGGG
TGGGATAAAAAGCGGATCATGCTTGGTAGGATGGAAGAGGAACGAGTCTC
CGTATTCTCTTTGGAGAAGATACTCAGCAGATAGGATGGGGTCATTGAAG
GTTTGGCCATTACCaagattaaagattttttcttgctTACTGAGTGATTC
TTTTGAGTTTTTCAAGATTTGGTGGTAGAGTGATTTTTGTTTGGTGCATT
CGCTTGGATCAATGGTTTCAGGAGCTAAAGTTGACAACCGACTTATCACT
CTGTCCATATCTTGAGTACAAATATTGCGGTTTAGTTTCTttggaaaaat
c Run BLAST on NCBI protein sequence of TCONS_00016819-protein >TCONS_00016819-protein ID=TCONS_00016819-protein|Name=TCONS_00016819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=580bp
IFPKKLNRNICTQDMDRVISRLSTLAPETIDPSECTKQKSLYHQILKNSK
ESLSKQEKIFNLGNGQTFNDPILSAEYLLQREYGDSFLFHPTKHDPLFIP
PVWTSKQFEKQDNKLSTNKGVMDTTNSQISVLDFEIDKDLKKTLDNLIES
SPYHWFTCEFESFMTSQSDGNPISDDIKINEQKFQDWLSNVKLMYMIAEK
FKTEKLTLPSTMEKFDIFLKGCISELRRIAPESELTEELSRFSRSRNGRK
SCNKMSNEFIQSNRPRDSKIRWIFDMSFSVRGEKVERWFFDQLALENNDI
NADALLDLVILTNTDIFRNLKNRMSREFDLLIFSWSRKLIIGVEMKRSMK
QAGHAVDQLDEYLSFFEEYLGDQFGPGWTFFPVVCLEEEKLTIQSHHFID
MRTDIKQWLASVLSKFPEMIYPEAPLIHPVEGLKKVLQMMLFVLHVSKPI
TATTWFDYITNAIEVVSSRXATTWFDYITNAIEVVSSRDNIVFYSKNQLP
VFIDDNPRYNKLIITGGYSTGKSFLLKQKALLLNEDPEYRGKVMYVCRFE
RTDLKNLFHWSVKHELEARGITVRQLNEVS Run BLAST on NCBI transcript from alignment at sc0000252:244961..246761 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016819 ID=TCONS_00016819|Name=TCONS_00016819|organism=Clytia hemisphaerica|type=transcript|length=1801bp|location=Sequence derived from alignment at sc0000252:244961..246761 (Clytia hemisphaerica)
gatttttccaaAGAAACTAAACCGCAATATTTGTACTCAAGATATGGACA
GAGTGATAAGTCGGTTGTCAACTTTAGCTCCTGAAACCATTGATCCAAGC
GAATGCACCAAACAAAAATCACTCTACCACCAAATCTTGAAAAACTCAAA
AGAATCACTCAGTAagcaagaaaaaatctttaatcttGGTAATGGCCAAA
CCTTCAATGACCCCATCCTATCTGCTGAGTATCTTCTCCAAAGAGAATAC
GGAGACTCGTTCCTCTTCCATCCTACCAAGCATGATCCGCTTTTTATCCC
ACCCGTATGGACATCGAAACAATTTGAAAAGCAGGACAACAAGTTATCTA
CCAACAAAGGTGTAATGGACACTACAAATTCGCAAATCTCTGTACTTGAT
TTTGAAATCGATAAAGATTTAAAGAAAACTTTGGATAACCTTATCGAATC
ATCTCCCTACCACTGGTTCACCTGTGAATTCGAAAGCTTCATGACTTCTC
AAAGTGATGGGAACCCCATTAGTGATGACATTAAAATAAACGAGCAGAAG
TTTCAAGATTGGCTTTCAAACGTCAAGCTCATGTATATGAtagctgaaaa
attcaaaactgaaaaaCTTACCTTGCCCTCCACCATGGAaaagtttgata
tttttcttaaagGATGTATTAGCGAACTTAGACGGATCGCACCAGAGTCG
GAGCTTACAGAAGAGCTCTCAAGATTTTCAAGGtcaagaaatggaagaaa
atcGTGCAATAAAATGAGCAATGAATTTATTCAAAGTAATCGTCCAAGAG
ATTCAAAAATTCGATGGATATTTGATATGTCTTTCTCAGTCAGGGGTGAG
AAGGTTGAGCGTTGGTTTTTCGACCAATTAGCCTTGGAAAACAACGATAT
AAATGCTGATGCTTTGCTGGACCTTGTTATTCTTACTAacactgatattt
tcagaaaccTCAAAAATCGTATGAGCCGAGAGTTTGACCTCCTTATTTTC
TCTTGGTCAAGAAAGTTGATCATCGGTGTTGAGATGAAGCGGAGTATGAA
ACAGGCAGGACACGCTGTTGATCAACTTGATGAATACCTAAGCTTTTTCG
AAGAATACTTAGGTGACCAGTTCGGACCGGGCTGGACATTTTTTCCTGTT
GTCTGTTTAGAAGAAGAAAAGCTCACAATACAAAGTCATCATTTTATTGA
CATGCGCACTGACATCAAACAATGGTTAGCAAGTGTTCTGTCGAAATTCC
CAGAGATGATTTATCCAGAAGCACCTTTAATTCACCCTGTCGAAGGATTG
AAAAAGGTTCTTCAAATGATGCTTTTTGTTCTTCACGTGTCAAAGCCAAT
CACCGCAACCACTTGGTTTGATTATATCACCAATGCAATAGAAGTTGTGT
CAAGCCGAGNTGCAACCACTTGGTTTGACTATATCACCAATGCAATAGAA
GTTGTGTCAAGCCGAGACAACATAGTTTTCTATTCCAAGAATCAACTTCC
AGTCTTCATAGATGACAATCCACGTTACAACAAACTCATCATCACCGGTG
GCTATAGTACAGGAAAGAGTTTCCTTCTCAAACAAAAAGCTCTGTTGTTG
AACGAAGACCCCGAGTATCGAGGGAAAGTGATGTACGTTTGCCGCTTCGA
AAGGACAgacttgaaaaatttatttcactgGTCTGTAAAACATGAACTTG
AAGCAAGAGGAATCACCGTTAGACAATTGAACGAGGTTAGCtaagtcttt
tattttttaattctatTTTCTTTCTTAAGATactaaaaattgacaaaatt
t Coding sequence (CDS) from alignment at sc0000252:244961..246761 >TCONS_00016819 ID=TCONS_00016819|Name=TCONS_00016819|organism=Clytia hemisphaerica|type=CDS|length=1743bp|location=Sequence derived from alignment at sc0000252:244961..246761 (Clytia hemisphaerica)
atttttccaaAGAAACTAAACCGCAATATTTGTACTCAAGATATGGACAG
AGTGATAAGTCGGTTGTCAACTTTAGCTCCTGAAACCATTGATCCAAGCG
AATGCACCAAACAAAAATCACTCTACCACCAAATCTTGAAAAACTCAAAA
GAATCACTCAGTAagcaagaaaaaatctttaatcttGGTAATGGCCAAAC
CTTCAATGACCCCATCCTATCTGCTGAGTATCTTCTCCAAAGAGAATACG
GAGACTCGTTCCTCTTCCATCCTACCAAGCATGATCCGCTTTTTATCCCA
CCCGTATGGACATCGAAACAATTTGAAAAGCAGGACAACAAGTTATCTAC
CAACAAAGGTGTAATGGACACTACAAATTCGCAAATCTCTGTACTTGATT
TTGAAATCGATAAAGATTTAAAGAAAACTTTGGATAACCTTATCGAATCA
TCTCCCTACCACTGGTTCACCTGTGAATTCGAAAGCTTCATGACTTCTCA
AAGTGATGGGAACCCCATTAGTGATGACATTAAAATAAACGAGCAGAAGT
TTCAAGATTGGCTTTCAAACGTCAAGCTCATGTATATGAtagctgaaaaa
ttcaaaactgaaaaaCTTACCTTGCCCTCCACCATGGAaaagtttgatat
ttttcttaaagGATGTATTAGCGAACTTAGACGGATCGCACCAGAGTCGG
AGCTTACAGAAGAGCTCTCAAGATTTTCAAGGtcaagaaatggaagaaaa
tcGTGCAATAAAATGAGCAATGAATTTATTCAAAGTAATCGTCCAAGAGA
TTCAAAAATTCGATGGATATTTGATATGTCTTTCTCAGTCAGGGGTGAGA
AGGTTGAGCGTTGGTTTTTCGACCAATTAGCCTTGGAAAACAACGATATA
AATGCTGATGCTTTGCTGGACCTTGTTATTCTTACTAacactgatatttt
cagaaaccTCAAAAATCGTATGAGCCGAGAGTTTGACCTCCTTATTTTCT
CTTGGTCAAGAAAGTTGATCATCGGTGTTGAGATGAAGCGGAGTATGAAA
CAGGCAGGACACGCTGTTGATCAACTTGATGAATACCTAAGCTTTTTCGA
AGAATACTTAGGTGACCAGTTCGGACCGGGCTGGACATTTTTTCCTGTTG
TCTGTTTAGAAGAAGAAAAGCTCACAATACAAAGTCATCATTTTATTGAC
ATGCGCACTGACATCAAACAATGGTTAGCAAGTGTTCTGTCGAAATTCCC
AGAGATGATTTATCCAGAAGCACCTTTAATTCACCCTGTCGAAGGATTGA
AAAAGGTTCTTCAAATGATGCTTTTTGTTCTTCACGTGTCAAAGCCAATC
ACCGCAACCACTTGGTTTGATTATATCACCAATGCAATAGAAGTTGTGTC
AAGCCGAGNTGCAACCACTTGGTTTGACTATATCACCAATGCAATAGAAG
TTGTGTCAAGCCGAGACAACATAGTTTTCTATTCCAAGAATCAACTTCCA
GTCTTCATAGATGACAATCCACGTTACAACAAACTCATCATCACCGGTGG
CTATAGTACAGGAAAGAGTTTCCTTCTCAAACAAAAAGCTCTGTTGTTGA
ACGAAGACCCCGAGTATCGAGGGAAAGTGATGTACGTTTGCCGCTTCGAA
AGGACAgacttgaaaaatttatttcactgGTCTGTAAAACATGAACTTGA
AGCAAGAGGAATCACCGTTAGACAATTGAACGAGGTTAGCtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016819-exon-sc0000252-1491911889:244961..246761 | TCONS_00016819-exon-sc0000252-1491911889:244961..246761 | Clytia hemisphaerica | exon |
| TCONS_00016819-exon-sc0000252-1510915933:244961..246761 | TCONS_00016819-exon-sc0000252-1510915933:244961..246761 | Clytia hemisphaerica | exon |
| TCONS_00016819-exon-sc0000252-1575043694:244961..246761 | TCONS_00016819-exon-sc0000252-1575043694:244961..246761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000252 | supercontig | sc0000252:244961..246761 . |
Blast
The following BLAST results are available for this feature:
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