TCONS_00016721 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016721
Unique NameTCONS_00016721
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016721 ID=TCONS_00016721|Name=TCONS_00016721|organism=Clytia hemisphaerica|type=transcript|length=834bp
ttttagtattaagaaaaaatcaaaaaaattgttatGTGATATTTATTGTC
ACCataacaaaaattgaaattagatGATGGCTGACAATGTGGAAGGAGGA
GCTCAAGGAAACGATAAAGATGCTGAAAACATTCCAGTAAAATGTGTAAT
GTTTGGTGGCGAAGGAGCTGCTGGTAAAACTTCGatgtttatttattatt
ttcataataaAATAAAGCCTGAGTATGTACCTCCGAAAGTTGAAACAGAT
AATGGAATAAAAATGTACACATATAAAGAAACTGGAGAAAAAGTACGAAT
TTATTACGATGACCATGAAGGTGGCGGCGAGGACTGGGATTCATTGCGTC
ATCTTGGTTATGAAAGAGCTCATGTTGTAgtcctttgtttttcaatttac
aCTACAGATAATCTAGAAAGAATAGAAGATTATTGGTACCCTTTTGTTAA
GAAATATGCCCCCAAAGCTAAGATATTGCTGTGTGCAACTCAAATCGATT
TAAGAACGAATCAAGAAGAAATAGATGCTTTAGCAAGACACAATGAAAGA
CTGGTTACCACTATAGAGGGAAAACAAATGGCAGAGAAAATTAAAGCTGT
TGGATATTTTGAATGCTCAACACATGAAGGGAAAGGAGTGAACGAGGTTT
TTGAAGCAGCCGCAGAAGCAACGATGCATGGGAAATCCAAGGACGATAAA
TATTTTGAACGTAAAGACAATAAAATGTGTTCGATGATGTAAATTCTGTG
AAAGTTTATTGACCTGAACTTTTTGGtgctttttgttttaaagAAACAAA
TTGTGCTAAGATTATTGGATGGTACATACATGAT
Run BLAST on NCBI

protein sequence of TCONS_00016721-protein

>TCONS_00016721-protein ID=TCONS_00016721-protein|Name=TCONS_00016721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MMADNVEGGAQGNDKDAENIPVKCVMFGGEGAAGKTSMFIYYFHNKIKPE
YVPPKVETDNGIKMYTYKETGEKVRIYYDDHEGGGEDWDSLRHLGYERAH
VVVLCFSIYTTDNLERIEDYWYPFVKKYAPKAKILLCATQIDLRTNQEEI
DALARHNERLVTTIEGKQMAEKIKAVGYFECSTHEGKGVNEVFEAAAEAT
MHGKSKDDKYFERKDNKMCSMM
Run BLAST on NCBI

transcript from alignment at sc0000248:175190..177189+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016721 ID=TCONS_00016721|Name=TCONS_00016721|organism=Clytia hemisphaerica|type=transcript|length=2000bp|location=Sequence derived from alignment at sc0000248:175190..177189+ (Clytia hemisphaerica)
ttttagtattaagaaaaaatcaaaaaaattgttatGTGATATTTATTGTC
ACCataacaaaaattgaaattagatGATGGCTGACAATGTGGAAGGAGGA
GCTCAAGGAAACGATAAAGATGCTGAAAACATTCCAGTAAAATGTGTAAT
GTTTGGTGGCGAAGGAGCTGCTGGTAAAACTTCGatgtttatttattatt
ttcataataaAATAAAGCCTGAGTATGTACCTCCGAAAGTTGAAACAGAT
AATGGAATAAAAATGTACACATATAAAGAAACTGGAGAAAAAGTACGAAT
TTATTACGATGACCATGAAGGTGGCGGCGAGGACTGGGATTCATTGCGTC
ATCTTGGTTATGAAAGAGCTCATGTTGTAgtcctttgtttttcaatttac
aCTACAGATAATCTAGAAAGAATAGAAGATTATTGGTACCCTTTTGTTAA
GAAATATGCCCCCAAAGCTAAGATATTGCTGTGTGCAACTCAAATCGATT
TAAGAACGAATCAAGAAGAAATAGATGCTTTAGCAAGACACAATGAAAGA
CTGGTTACCACTATAGAGGGAAAACAAATGGCAGAGAAAATTAAAGCTGT
TGGATATTTTGAATGCTCAACACATGAAGGGAAAGGAGTGAACGAGGTTT
TTGAAGCAGCCGCAGAAGCAACGATGCATGGGAAATCCAAGGACGATAAA
TATTTTGAACGTAAAGACAATAAAATGTGTTCGATGATGTAAATTCTGTG
AAAGTTTATTGACCTGAACTTTTTGGtgctttttgttttaaaggtGTGTT
ATTTTATGAATATACAGGCATGGTTGTCTTAGTTATTGTTTGTTTGAGTG
TTTCAATTTTAGTACAATGTACTATCTGGAACATCTTGTTATAGTACCAC
GAGTTTAGAAATTACACCACCAATTGGCGATAAGTGCACTGGTCATCCAA
TATAAGTACGCATTCTCGAACATTTGGGGTCATATAAAATGATATTGGAC
GGGGTGGTTTTTCCAAACTAGTATctgaaaaattaacattttcaacaatt
tcaatgcttttcaaaattttattgatttttcttcttgcaGAAAACTGGAG
TCTGTCCGGAATATAGACTCTCGTCCAcccgaaaaaaaaatattaagtaa
aAGTGTCCTTTTACCAGTGTTAAGGGTCAAATTATTTATTAAAGAGATCT
AACTGTTTTTCCCAATAAACTGAGCCTTGTCttataaaatctttctttat
aTAGGCTTGTATGTAAGTGCTTTATCTTAAatgattttcataaattattt
acCTTTTTGTAGATCTTTCTTGTACCTTTAACTTATTTTTGATGCAAAAC
ATAttcatcatttaaaaaaaatatttttgcaccATATTTCTTAAAATGAT
TGCTGATTtatctgttcacgataagtgtgcaatctttttacttttaccta
taacttttgaagaaattcttcaatctttataaatttggtatcgttggaga
gatatttgtgagtggaacaatttgaaataaaaaaatctttaaaaaaattc
taaaaatgaagatgaaaattaagaataaaaaagtgaagatcttgtagaaa
agtgctataactttcattttcactggagagattctttgagcttaggaggt
catcactgtgaagaaatttcactaaaatatatttattcaatataaagtta
taatACAAAGTTTaaaagtgattgaccccaaaaaacagcaggaAACAgtg
tttttagacgtcaatcagcttataactttgtttgatatcttttgactgaa
tgattatttttgagaaattcttaaTTGTATTATATTGAGTCTTTTGAGAT
TTCGTCAGATTTTATCATAATTTCATTCATATGAAGATTaatcaaaactt
gaaaattgtATTGTTATACTCGGTATCATGCCATAACTACTATTAATTAC
ATTTTTTAGAAACAAATTGTGCTAAGATTATTGGATGGTACATACATGAT

Coding sequence (CDS) from alignment at sc0000248:175190..177189+

>TCONS_00016721 ID=TCONS_00016721|Name=TCONS_00016721|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at sc0000248:175190..177189+ (Clytia hemisphaerica)
atGATGGCTGACAATGTGGAAGGAGGAGCTCAAGGAAACGATAAAGATGC
TGAAAACATTCCAGTAAAATGTGTAATGTTTGGTGGCGAAGGAGCTGCTG
GTAAAACTTCGatgtttatttattattttcataataaAATAAAGCCTGAG
TATGTACCTCCGAAAGTTGAAACAGATAATGGAATAAAAATGTACACATA
TAAAGAAACTGGAGAAAAAGTACGAATTTATTACGATGACCATGAAGGTG
GCGGCGAGGACTGGGATTCATTGCGTCATCTTGGTTATGAAAGAGCTCAT
GTTGTAgtcctttgtttttcaatttacaCTACAGATAATCTAGAAAGAAT
AGAAGATTATTGGTACCCTTTTGTTAAGAAATATGCCCCCAAAGCTAAGA
TATTGCTGTGTGCAACTCAAATCGATTTAAGAACGAATCAAGAAGAAATA
GATGCTTTAGCAAGACACAATGAAAGACTGGTTACCACTATAGAGGGAAA
ACAAATGGCAGAGAAAATTAAAGCTGTTGGATATTTTGAATGCTCAACAC
ATGAAGGGAAAGGAGTGAACGAGGTTTTTGAAGCAGCCGCAGAAGCAACG
ATGCATGGGAAATCCAAGGACGATAAATATTTTGAACGTAAAGACAATAA
AATGTGTTCGATGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009349XLOC_009349Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016721-proteinTCONS_00016721-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016721-exon-sc0000248-1491911889:175190..175982TCONS_00016721-exon-sc0000248-1491911889:175190..175982Clytia hemisphaericaexon
TCONS_00016721-exon-sc0000248-1510915933:175190..175982TCONS_00016721-exon-sc0000248-1510915933:175190..175982Clytia hemisphaericaexon
TCONS_00016721-exon-sc0000248-1575043694:175190..175982TCONS_00016721-exon-sc0000248-1575043694:175190..175982Clytia hemisphaericaexon
TCONS_00016721-exon-sc0000248-1491911889:177149..177189TCONS_00016721-exon-sc0000248-1491911889:177149..177189Clytia hemisphaericaexon
TCONS_00016721-exon-sc0000248-1510915933:177149..177189TCONS_00016721-exon-sc0000248-1510915933:177149..177189Clytia hemisphaericaexon
TCONS_00016721-exon-sc0000248-1575043694:177149..177189TCONS_00016721-exon-sc0000248-1575043694:177149..177189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:175190..177189 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
52.7341	56.7996	71.539	77.8644	34.3082	26.3774	26.4936	24.8688	20.9907	23.1088	18.1285	17.145	12.7747	13.6408	9.88248	11.4592	19.3709	18.5883	13.2318	17.0251	16.2869	13.5274	27.231	31.9765	14.2248	16.8454	41.3705	27.3348	30.0447	32.8263
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00016721 vs. Swiss-Prot (Human)
Match: CDC42 (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.702e-31
Identity = 69/201 (34.33%), Postives = 104/201 (51.74%), Query Frame = 2 
Query:  137 VKCVMFGGEGAAGKTSMFIYYFHNKIKPEYVPPKVETDNGIKMYTYKETGEKVRIYYDDHEGGGEDWDSLRHLGYERAHVVVLCFSIYTTDNLERIEDYWYPFVKKYAPKAKILLCATQIDLRTNQEEIDALARHNERLVTTIEGKQMAEKIKAVGYFECSTHEGKGVNEVFEAAAEATMHGKSKDDKYFERKDNKMCSMM 739
            +KCV+ G +GA GKT + I Y  NK   EYVP     DN     T    GE   +   D   G ED+D LR L Y +  V ++CFS+ +  + E +++ W P +  + PK   LL  TQIDLR +   I+ LA++ ++ +T    +++A  +KAV Y ECS    KG+  VF+ A  A +          E K ++ C ++
Sbjct:    4 IKCVVVG-DGAVGKTCLLISYTTNKFPSEYVP--TVFDN--YAVTVMIGGEPYTLGLFDT-AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP-------EPKKSRRCVLL 191
The following BLAST results are available for this feature:
BLAST of TCONS_00016721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC423.702e-3134.33Cell division control protein 42 homolog OS=Homo s... [more]
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