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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016556 ID=TCONS_00016556|Name=TCONS_00016556|organism=Clytia hemisphaerica|type=transcript|length=1011bp
ctccaggctgccccaaagttttgggacatacacacacacagacacacaga
cagacacacacacacacattctcagattctaactcaactgaagttgagaa
tagattccaaaaatatattaacATTTAATTCATACCTACAATAAAATATT
CATCTCACAAAAAATTGGTAGATTGGATTTATTACGGATTTTCATCATTG
TCAGTAATCTTGTTCGTTTATGGTTACGACAGTACTTCCAGTCGATACAT
GTTCAGATTTAAGTATCATTATTGTGTCCAAACTGTTCTATGGTCTTTTC
TTGATTTCGTTTCTTCTTCTATCGCAAATTTCAATCAACCCAATTTATTC
CATCACACAGTCTCCTTCCTTTTGATTCCGTTCCTTCGAGCAGTTGGAAT
CCGAACCTtttctttacgcatgcgttgtATCAAGAAATGCTGTAGAACTG
ACATTGTTTTCGGACAATTAAAAATGGCTTCACTCCATTCGTTAGTACGA
GTTAAACTCATATCATCTTTAATCAACTCGACAATTCGGTCTATCCATAA
CTGATCAAATCGGACTTTTTCCATGGTCTCGATTgcctcaaaaatatttt
cattgttaATCAAGGCTGATGCTTTATGAAAACTATCACGTATTTGaaat
tcatcattttcaaaatggctgacATGTAgaagatcattcaaactactCCA
TGAATGTACTTGCTTTCCATCCAACGTGTAGAATCCATCGTCTCCTTTTT
GTATCAGAAAGTTTTTTGGTGGGCTTGATCCGAGTTCCATATCAGGATGc
atttcttcttttctttttgaaggCAATGTCCAGCCTCGCTGTCGAAAGTG
ATCAGCAAAATCTGATGATTCTTCCATAGTATTggattgatggttctggt
tcATCTTGTCTCTCTGTATTCACCGGGAAGTAATTCTTGACGTTATAGCT
TTTAACGACTTCTTATTAAGGTGTCTGTTTCCCTTTCCGTATTTCTGAAA
TGATTTTCTAG Run BLAST on NCBI protein sequence of TCONS_00016556-protein >TCONS_00016556-protein ID=TCONS_00016556-protein|Name=TCONS_00016556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MNQNHQSNTMEESSDFADHFRQRGWTLPSKRKEEMHPDMELGSSPPKNFL
IQKGDDGFYTLDGKQVHSWSSLNDLLHVSHFENDEFQIRDSFHKASALIN
NENIFEAIETMEKVRFDQLWIDRIVELIKDDMSLTRTNEWSEAIFNCPKT
MSVLQHFLIQRMRKEKVRIPTARRNGIKRKETV Run BLAST on NCBI transcript from alignment at sc0000241:76134..77144 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016556 ID=TCONS_00016556|Name=TCONS_00016556|organism=Clytia hemisphaerica|type=transcript|length=1011bp|location=Sequence derived from alignment at sc0000241:76134..77144 (Clytia hemisphaerica)
CTAGAAAATCATTTCAGAAATACGGAAAGGGAAACAGACACCTTAATAAG
AAGTCGTTAAAAGCTATAACGTCAAGAATTACTTCCCGGTGAATACAGAG
AGACAAGATgaaccagaaccatcaatccAATACTATGGAAGAATCATCAG
ATTTTGCTGATCACTTTCGACAGCGAGGCTGGACATTGccttcaaaaaga
aaagaagaaatgCATCCTGATATGGAACTCGGATCAAGCCCACCAAAAAA
CTTTCTGATACAAAAAGGAGACGATGGATTCTACACGTTGGATGGAAAGC
AAGTACATTCATGGagtagtttgaatgatcttcTACATgtcagccatttt
gaaaatgatgaatttCAAATACGTGATAGTTTTCATAAAGCATCAGCCTT
GATtaacaatgaaaatatttttgaggcAATCGAGACCATGGAAAAAGTCC
GATTTGATCAGTTATGGATAGACCGAATTGTCGAGTTGATTAAAGATGAT
ATGAGTTTAACTCGTACTAACGAATGGAGTGAAGCCATTTTTAATTGTCC
GAAAACAATGTCAGTTCTACAGCATTTCTTGATacaacgcatgcgtaaag
aaaAGGTTCGGATTCCAACTGCTCGAAGGAACGGAATCAAAAGGAAGGAG
ACTGTGTGATGGAATAAATTGGGTTGATTGAAATTTGCGATAGAAGAAGA
AACGAAATCAAGAAAAGACCATAGAACAGTTTGGACACAATAATGATACT
TAAATCTGAACATGTATCGACTGGAAGTACTGTCGTAACCATAAACGAAC
AAGATTACTGACAATGATGAAAATCCGTAATAAATCCAATCTACCAATTT
TTTGTGAGATGAATATTTTATTGTAGGTATGAATTAAATgttaatatatt
tttggaatctattctcaacttcagttgagttagaatctgagaatgtgtgt
gtgtgtgtctgtctgtgtgtctgtgtgtgtgtatgtcccaaaactttggg
gcagcctggag Coding sequence (CDS) from alignment at sc0000241:76134..77144 >TCONS_00016556 ID=TCONS_00016556|Name=TCONS_00016556|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0000241:76134..77144 (Clytia hemisphaerica)
ATgaaccagaaccatcaatccAATACTATGGAAGAATCATCAGATTTTGC
TGATCACTTTCGACAGCGAGGCTGGACATTGccttcaaaaagaaaagaag
aaatgCATCCTGATATGGAACTCGGATCAAGCCCACCAAAAAACTTTCTG
ATACAAAAAGGAGACGATGGATTCTACACGTTGGATGGAAAGCAAGTACA
TTCATGGagtagtttgaatgatcttcTACATgtcagccattttgaaaatg
atgaatttCAAATACGTGATAGTTTTCATAAAGCATCAGCCTTGATtaac
aatgaaaatatttttgaggcAATCGAGACCATGGAAAAAGTCCGATTTGA
TCAGTTATGGATAGACCGAATTGTCGAGTTGATTAAAGATGATATGAGTT
TAACTCGTACTAACGAATGGAGTGAAGCCATTTTTAATTGTCCGAAAACA
ATGTCAGTTCTACAGCATTTCTTGATacaacgcatgcgtaaagaaaAGGT
TCGGATTCCAACTGCTCGAAGGAACGGAATCAAAAGGAAGGAGACTGTGT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016556-exon-sc0000241-1491911889:76134..77144 | TCONS_00016556-exon-sc0000241-1491911889:76134..77144 | Clytia hemisphaerica | exon |
| TCONS_00016556-exon-sc0000241-1510915933:76134..77144 | TCONS_00016556-exon-sc0000241-1510915933:76134..77144 | Clytia hemisphaerica | exon |
| TCONS_00016556-exon-sc0000241-1575043694:76134..77144 | TCONS_00016556-exon-sc0000241-1575043694:76134..77144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000241 | supercontig | sc0000241:76134..77144 . |
Blast
The following BLAST results are available for this feature:
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