XLOC_045638 (gene) - C. hemisphaerica

Overview
NameXLOC_045638
Unique NameXLOC_045638
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_94:243446..247285+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045638 ID=XLOC_045638|Name=XLOC_045638|organism=Clytia hemisphaerica|type=gene|length=3840bp|location=Sequence derived from alignment at scaffold_94:243446..247285+ (Clytia hemisphaerica)
GTGCGAGttcattttcaattaaatttgaaGCAATCCTGTTTTTATTTAGA
GTTTTGTACTTGGACTAACCTCTCGCGAATATCATTTGACCTTCTGTAAG
TGCCTGCTTGGAACTATATTCTGGTATTCGATGAATTTCTTGACCATATT
AAGTTTAAAAGACAGATATTCTATATTTGATCAACGAGCAATAAAATGAT
tggtacagtatgtggcccccaaaacgtcgatcaagtttgaaatttctctt
AAATCTAGAGTGAAAGaggttttataaaatttttgctgcatacaaaattt
ttttaacatctctagttctttttcaaaattttcaatttcaccaatgtttt
ttaattgcttaaagataggtagcttttttctttttgctccCAAAATGTCG
GTTTGCAATTTTAATGATTTCTCGAGATctctttaaccctattagcccca
agcttttttgacttttgtatccccagggggggtagaatctaccaccctcg
attattttcgatctacNTtatcaaatccgccaaattccgccaaaatttct
tcccttaaggtaacattttttcccaaaatcaaatctgataaGTGGTAAAA
ATGATCATATCAATTAACCCTTCGCATCATTTAAGATGCAGTTTGCATCA
TCAAACATAGAGTTACGAAAATTACTGCAAGGAAATTAATTTATGTTTTA
AATAGGTGAAgatcgaaacaaaacatcaataTGGGAAGATTTGTGTTATC
AGTttctttgaccattttgttggtTAGCATTGTACTTTGcgcaaacaaca
acaacaacaacaacaataataacaataacaacaataatNCCTGAAAgata
aaagactgttctttaacataattgccggttttgcaaattccatgaagagt
ttttcttaaaatctatgctgaagatgagtaaaactttcaaaatttaNAAC
AACAACaatcaaaataataacaatcaaaacaaccaaaacaattGTCCAGG
AACAAACAACCCTTGGGAATATTGTAAGTATGTTCTATAGGCTACCCAGG
GGGAGGGGGcactgcaaattttttttccgtgaacGGACGGAAGTATCTTC
GACGGTCAGAAGTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtgtctaattttcgcaccgagtgggattcgaacc
accaccaaagaaagaccttcagattcggaagccagcgctctatccattga
gccatcgccgcacagcaaatgCACGCAactcataacatattataccgaac
tggcaaaagacggggtaatgttattataatatgggtaaaagtaccccttt
ttaaactgactgaaattcgagccgttactagcaaccctgcggggcNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaagccgttactagcaaccctgaccctacctaattGATTGGTAat
gacccaataccccctgaaccacggaatgacggataggaaaaattaaaagc
gatactcccgaccgtcaaaAGATGATACTTCTGACCGTCCAAGATACTTC
CGTCCGTTCACGGAAAAAAATTAGCAGGGGCACTAGGATTGGCCGATGAG
GAGTATGTCTGGACGGGACCTCCGgaaaccaacccttagagagattgttt
tcttctgaaaaggtgacccttagagggactttGAAAAACTTAGAAAATTT
CCTTCCATCTTTGAAAAAAgtcctacccttagagagacctttttacaact
ttttcattttttcaaatcaaaagaatttcctaaaaattgtgatttttccG
ATCCTAAGAGTcttttgaaaggtgaaaaactgacccttaccgcctgcaca
tacccagcacccatttttgcccaAGTACCCCCAACCCCGCTAGTAATTTA
TTTAGTATTTAAACCTAAAAGATTTCTTTGACTCTTTCTCCCCAAATATA
GCAGCACAGATTAATTTTTATATCTTCCACAATCTTCATTCAGGCAATGG
AATCCGTTATGACCCTGTCTCAGAATGGTGCTGTGAAGGAAGATTAAACA
ACAAACGTGCTTTTTATCGATGCTGTGGGTAAGTCAATTTGAAttccaaa
gaaaaattgcattttgcgggaattaattttcgcagttttgTCCTTTGTTG
AACACATTTTCCACTTTCCTAGtgaaatttcaaatcttttgaTGCAAAAT
GGCGAAATATGCATTTCACGGGTCCTAATTTTCGTGGTTTTGCCGAAAAA
TTACGGAAatagcaaaaattagttcccgcgaaaaaaagttcccttaagga
TAATAAAAAGGCTATTTTAAAGAAGGCACAAACAAAGGTAATACTACACC
CCTGTCTTACAACCCCAGTGGGATTTCTTCTCACACCGAGGATAAAAAAT
TATATCGAAAACCCGATAAGGATAGCTAATTGTTCTCAGGTAAAAAATCT
TGTGAGGAGTGTCTTAAGGTGCAATTTTTCAAATGAGGATGAAATCAATG
TTTATTTCCCAATCGGGTTGCAACTTTgggatatttttcccaccggtgaa
attttagccaatttttgcAGTGGGATGAATGGGACCTACTGCGTCAGTGA
CACGGAGATGTCTTTGGCTATTCTAAAGAAGGCACGAACAAATGTAGTAC
AaggtttttttatgaaacaTCGTAgttttcagatgttcttaactactcga
gttttaagcctaaacatgttgttaaaatgttcttaatttcacctgctctt
aacttgctcttaccgtaaatcaccgattaagcgccccgcttgaattagcg
ccccgctcgaataagcgccccccatttagttaaaataattttataagcac
ctacctcgaataagcgccccagtttgaataagcgcccccctccatccttt
tttgaagttaagtttaagcagattccgaatttgttgatatacgaatttct
gaaataaaaaaataagcgccccgcttgaataagtgccccgcttgaataag
cgcccccctccatccttttttgaagttaagtttaagcagattccgaattt
gttgatatacgaatttctgaaataaaaaaataagcgccccgcttgaataa
gtgccccgcttgaataagcgcccccctcagagcctgaaaaattaaataag
cacccgggcgcttaatcggtgatttacggtaaTTCTATTTGGGCCGGGGG
GGACTAAAAATCCCCCTCTACAACTTGTTTTATAATAGCTTTTTAACGCT
ATGGTTATCGAAgtctcatgttcttatatagtttgttttaataaaaaact
ttatttttaccAGAACTGCTACGTACGATACACTATCTCAATCATGTACC
AATGGCCGTGTTTCAAATATGTCGTCTAAATGTAATGGATGGAACTTCAA
CCCTCACAATGAATTTTGCCATCAAGGAAAATTATACCAACTTCGTTATT
TCGTACTTTGTAATGGAAATGTTTATCGCAAGTTGTAAAGAAAAATAACT
ATGATTAGATTTGAACTGAAGAAAATATAGTTGCCTGTTA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00073529TCONS_00073529Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00073529-proteinTCONS_00073529-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:243446..247285 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03	0.47	1.17	1.07	0.37	0.22	0.71	0.6	0.52	0.36	0.17	0.09	33.63	30.87	0.66	0.5	5.5	6.51	139.53	133.72	48.89	53.75	23.09	22.58	33.01	38.31	1.32	1.31	0.61	0.62