XLOC_045548 (gene) - C. hemisphaerica

Overview
NameXLOC_045548
Unique NameXLOC_045548
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_91:141471..150673-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045548 ID=XLOC_045548|Name=XLOC_045548|organism=Clytia hemisphaerica|type=gene|length=9203bp|location=Sequence derived from alignment at scaffold_91:141471..150673- (Clytia hemisphaerica)
CTTTTGAGATAGCTCTTCATGTATCCGAAGTGTCTTGCATGAAACCAACC
TATGATACGCTGAAAACGATGGTGCTGAAAGATTTTGCATCGTACGGGGA
CAAATAGCGTGATTTCTTTTGTGACAATGAGGTATTTTGATATTTCTTTA
ACGTTTCACCTCATTTTTAACTTGGATTTTTAACGACATGCATCTCTAAA
ATGAGAGAAGATTTATTTGGTGTAGGTCAATAACTAGGTCCATGATAAAA
TATTTCTCTTCCTGGCTTAACTTATTTGGAAAATATTAATCTTAGAGGAA
CGTGGTTATTCAGGAAGAGATAAAGCAATACATCGAAAACAAAAGCTACG
CGCGACAAGCCGGAGATGAAATTCTTTTCAATTCTTTAATCAATGTAACA
ATGGCCAATGCCTTTTTATGGCGTCGTGAAATAGACGGGTCTTTCATTTT
GATTGGGCATCGGAAGCCTTCAAAAACTGATTTGCCTTCAAATTGCCCGA
TCCACATCCACAAAATTGGAGAACATTACGAGCCTATTGTCGACAAAAGG
TTCGAAGGTGGGCTGTAGTTTTACTCTTGTTTGCTTAATACTAGGGTGTC
ATTTTTGAAATAAAACACCCACACCCCATTTTATGATTTTTCGTGCCGAG
CACCCACCGCTCCTGCTTATTATTAACCCCCCCCCCATTTTTAAACACCC
CCTTGCTTGATAATATCAAGCTCGACTGAATAATTTTCAATATCCAATTT
TTCTTGTCGACCTTAAAATTTATCTGATTTAAAGTACAGAATTCATTTGA
AAAATAACAAACAATTTTTATTATATAGAGACTTCAAAGGCACTGTCCAG
AACTCATGGATTATCTATGCAGCAGACACAGGCCTTGTCACTTCTTTGTA
AGTTTCATACTAAAGCTACTTTAAGTAAAGGGCTGCAACTTTAGTTCCAA
GCACACTATGAAAAAAATCTAAATATACAGATTTGAAACCAGCAAGGTTA
AAATGTTCTAAAAATTCATCAACTGGCAGTCATATCAACGATATGTGACT
TGTGAATATAATGTGAGTGGTTGCTGAGAAAATTTAAAAAAATGTTACAT
ATACTTTTGGAACAGAAAATCAGACAAGGAAATATCAAAATTTATTCTGT
TAAGAAAAAGGCTAAAAATTACCTCTCATCATTTGATAGTTTTATATTTT
TCTTGATTTCTTAGGTTCCTCGGAAGAAGAAGAATCAAAACATGCGACCA
AGGGTAAACACAATTAAAACATTTTGTCCAATTTTTTAAAGCAATAAATG
TCATAAAAACATTCTTTCTTTGACCCCACCCCCTCGCGTCTGATTGGTCA
CTTATTTATATACTCTCCCTGATTTTTTGATGAGATCCACACAATGAATA
ACTTATATGAATTCAATTCATGGTCTTTGTTATTTAGAATCATCTCTTGA
TTTACGGAAATTACATGATGAGCAGATCGAAATCATATCGGAAATTCCTC
GTAAGTTTCTTTTTTGCTAGATTATTCCAAATAAATTTTCTGACTTTACA
AACCTAATTTTTCTTTCAAATCATCACCCATCATCATTAGATAAGGACCA
GGAACAACTAACTAAAATAATAATGGATTTTTAAAATGTTTGTAACTTTT
CATAGAATTTGAATTAGGTAGCGATTTTGTGCTCGTTTTATAAATGTCAA
TTAACGGAAGCTTGAATTTGGAAATTTAATTCTTAGAATCATCTCCTCTG
ACAGTCAAGGACACCTTCAAATTAGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGA
CCCTTAGAGAGACTTTTTCGAAAAATGTTCTCTGATTTTCAAAAATTTCC
TACCCTTAGTGAGACTTTTTTGTAATTTTTTCTCTCAAAATCAAATTGTT
TTTCTAAAAATCGTGATTTTTGCGGAACGTGCGTTTGAGCGCGCTGATTT
TTTAAGCTGGATTTTACTTGTAAAATGACGTTGCTGCTGTTCACACTTAT
TGGAAATTTTACTCGAGTATCATTCTTGAAGTTTTTTTGCCATTTTCTCT
GGGAGAGGAGAGCTGTCCTACCATCCACTCAACTTGCTGACGTGTGACAA
TGTGTGGCTGTTTTTTATGTTGTCAACTGAAATTTTCGATAAATGGTCTG
ACAGATGGTTGTTTATTCTTGTGGCATCCATACTTCATGGCAAATTTTTG
TGACAATTGATTGGAGTAACCATTCCTATTACATCAGTTGATCTCATTGA
AAACTATTTTTATTAATGGCTAGCTTGAGATCAAACCAACAGTCAACGGT
CAAGTCAGATTTAAAACAACATCTGGATTTCGAAATATTCTAACATTTAG
ACTTTATAGTTTTATTGGAAATGTCATGTCATGGTTAAATTTTACATTCA
GCTGAACAATGATTTTTTTGTCATGTTGTCAATACACAGTTCAACGTATT
CTATATAGTAAACAAAAACGCTTTTAGGCTGGTTGAGGTATAAGGAGGTA
CGCTGCTGTGGTGAAGAACGGACAAAATATTTGCAGAAGTTTCTTAATTG
CGGAACCAAAACGAAAAATATCGACTTTGCTCTGAATTGAAGAATGGGAC
CTGTTTAGCCAGCGAAAAGAAGCTAAATTTTATTGAAAATTAAATTTAGT
AAAATTTTGGTACTGATTTTGTTGTTTTTTGTTTTTAATATACATACTTT
TGAAAAAAAGTAAAAGTGGTACAAAGTGGTACTAAGATTATATCGAGTTT
GACAATCCAATCAAGTGCGAGATGTCTGTTTTCGTTGCTGCTACTTTCGC
TTTTGCACACTTGCGAAACATAAACAAAGATGGCGATTTTTGTCAAGGCA
GGATCTTGCTGATTTTTTAAGCTGGAAGGCATATTTTGCTTGTAAAATGA
CGTTGCTGCTGTTCACACTTATTGGAAATTTTAAACGAGTATCATTTTTG
AGGTTTTTTTACCACTTCCTCTGGGAGAGGTGAGGGCTGTCCTATCCTCC
ACTTGCTGATGGTGGTGGCTGTCGTCAACTGCTGAAATTTTCCATAAACG
GTGTGATGGTTGTTTACTTTGTGGCATTCAAACTTCATGGCACATTTTTG
TGATAATTGATTGGAGTAACCATTACTATTACATCAATTAATCTCATGGA
AAACTATTTTTATTGCTTGATCAAACCAAATACAGTATCTGCAACAGCCA
AATCAGATTTATAAAACAACATTCGAAATTTCGAAATATTTTAACTTTTT
CGACCCTATGATTTTACTGGAATTATCTCGTCGTTAAACTTAACATTCAG
CAGGTATTGTTGCCAAACAATGATTTTTTTTGTCACATTGTCAGCCAATA
CTGTTTGACTATTCGAGTAACACTTTTACGAAAAAGATCATATGCCATAT
CGAATATTGAGTGATTGTGGTCAGTAACATTCCTTGAGGCTGATTGAGGA
GGTACGCTGCAGTGAAGAACAGACAAAATATTTGCAGGAGTTTCTTAATT
ATTCATCATGGCATTAGAAAGACTTTGTTGTGGTTTGAGATCAAGCAAAT
GCTTAATATGTACGTATTAATGCAACACACAAGAAGGGGGTCAAATTGTG
ATCATATTTTGTGACATGTGATGTTCAATGACATTTTAACTTTTACATAT
ACTAAGGCAGCAATCACTAATACACTTCCATTTTATTTGAATCTTTTTCA
GTCAGTAGTAGAAAATTTCAAATTCACTGGTGCTGGTGGTCATTATTCAG
CTCAAACACTTTAAATAATTCCCAAATAAAATAAGCACTTTTGAAGCATT
TTACTCAAAACTCTTGAGCGTGTTTTTGGTGAAGTGAAATGAAGATGTAT
GTGATCGCCGCCTTAGAATATACTTTAAGTAGATAAATTTTGGCGTGGAA
TTAATTTGGCAATTGGCCAAAATACAATTTTTTGACGAGGATTTAGCTAA
TTTGACGATAGATCAATTTCATAAAATTTGGCGGGAATTTAATTTGGCGA
AATGCAAATTTTGAGACACTTAAATTGGTAAAATTTACTATAAAATATAC
TGAAAAGTTGTTATTTTTTACATAATATTCTTTTTGTTAAATTTGGCGGG
AATTTAGTTTGGCAAATGGTCAGTTTTTGAAATTTGGTGGGGATTTAATT
TGCCAATATTTGTTAAAATTTGCCGAATTCGCCAAATTTAACCCTCACCA
AAATTAATTCACAAGGTATGAAGTATTTATTCAAGGGGTTCGAAGTCATT
GCATGTTTAGCTTTTCTGATTGCATGAATGTATGGAAACTAGAGAATGTA
GTGAATTATAAATTAGTGACATTTTTGTGAAAATGGTATTCATTTTTACC
ATTTTTAGTTAGGACATCCTAACTATCAAAAAGTCTATAATACAATGTCA
TGTTTAAAAGCTACAGAATCTAAACAATGACGAGAAAGACTACACTTATA
ATCAACATACCCCTATGATGTTGATTATTATGTTGATACCCCAATGTTTA
CGTCCATGCTACAATGCTATAATCTTTAGAGTTTTAATTTTTTATTTTTG
TTATTTACTTTTGTGGAAATTTGTATTGAACAGATATTCTTGTACTTTTA
ATCAGGGAAATTTATTTAAAGCTACAAGTATTACAAAATCGAGCACAAAT
GACTTTTTGTCTTCTAATTTTCCAACATCCTCTTTTTTGGCATTATTGTT
ATGACTCGCTAATAAATTCTAGGTGAAATGTAAGGTCTTATTAGTTTGTT
TTTTAAATTCTGCATTAATTAATAATGGAGTCGATTACTTGTACATTTTG
AGATTTCTTCGCTTTGCGAAAACAGAACGCTCGTTCCGCAACCCCTTTTA
TGTTGATTATTCAACATGACATTAGAAAGACTTGTGGTTTGAGATCAAGA
AAACGCTTATTATGTACGTATTAATGCAACACAAGAAGGGGGTCAAATTG
TGAATGTTTTGTGACATATGATGTTCAATGACATTAACTTTAAGGCAGCA
ATCACTAATACACCTCCATTTTATTTTGAATCTTCTTCAGACAGTAGTAG
AAAATTTCAAATTCACTGGTGCTGGTGGTCATTATTCAGTTCAAACACTT
TAAATACTTCTCAAATAAAATAAGCACTTTAGAAGCATTTTTCTCAAAAC
TCTTGAGCATGTTACTGGCAAAGTGAAATGGAGATGTTTGTGATCGCTGC
ATTAGAATATACCTTAAGTGGATAAATTTTAGCGTAGATTTACTGTAATT
TGGCAATTGACCAAAATACAATTTTTGACAGGGATTTGCCGTTAAGTGCT
CTAACTTGGGACTATCTGACAAGACATGGGACAGCAATTCGACCACCATT
TCACCGAACCTCCAAAGTCATTTGATTTGAGCTAAGGAACGGCGTATTTA
AAAATAAACGATTTCTCTTTCGATTTTACAGTAAGTGAAAATACAGACCC
ATGTTTTGACCAATTGTCCCAAGTCCCAAGAGCAGTTGACGGTAGCTAAT
TTGATGATAGATCAATTTCATAAAATTTGGCGGGGATTTAATTTGGCAAA
TTTTGAGACACTTTTAAAAATGGATAAAAATTACTATAAAATATACATAA
AACTTGTTATTTTTTACATTAATATATATTCTTTTTGTTAAATTTGGAGG
GGATTTAGTTTGGCNATAAAATATACATAAAAGTTGTTATTTTTTACATT
AATATATATTCTTTTTGTTAAATTTGGAGGGGATTTAGTTTGGCAAATGG
TCAGTTTTTGAAATTTTGGCGGGGATTTAATTTGGCGATATTTGTTAAAA
TGTCATAATGACGAGAAAGACTACAATTTTCCTAAACTACACATCAGTGT
GTTATTGTTTTTATGATTTCACAGCCGGTACGTATGTTGAAACTTGTGTT
GAAAAATTCTAGAAGGATCTTTTAAAACTCATTCAGACTCATTAAATTAT
TTTTAGCTCAAAAGCCCCGTATGAAATACTCTCTGTGTTACCCTTTTAGA
TACCGAAATACACTGAAAAACACAATATAATATATATTTTTGAATTTTAA
ATAACAACAAAATATTTTTCAACCAAACCAAAACATAATAATATGTGAAA
TTTTGTATTTCATGAGTAGAACAGATATCTTTGTCCTTTTAATCGGGGAC
ATTTATTTATTTAAAGCTACAAGTATTACAAAATTGAGCACAAACGACTN
ATTTTTTATTTTTGTTATTTACCTTGTGGAAAAAAAGTTGTTTTGAACAG
ATATCTTTGTACTTTTAATCAGGGACATTTATTTATTTAAAGCTACAAGT
ATTACAAAATTGAGCACAAATGACCTTTTGTCTTCTAATTTTCCAACACC
CTCTTCTCTGGCATTATTGTTATGACTCACTAATAAATTCTAGGTGAAAT
GTAAGGTCTTAATAGTTTTGTTTTTTTAATTCTGCATTAATAATGGAGTC
GATTTCTTGTACATTTTGAGATTTCTTCGCTTTGCGAAAACAGAACGTTC
GTTCCGCAACCCTTACCGTCCGCACATACCCAGGACCTATTTTTGCCTAA
GTACCCCCTCCCCCCGGGAAGCTAATTTTCTGATAATGAAGTGCCGTGTA
CGAAAACACATATTTGTTTAAAAAAATTTTTTTTTTCAAAAAGCCCGATT
TTCTTACCCTGCGCATGTGCACGCATGCGCAGTACCAAAAAGTGGAATAT
TTCCTAAACCAAAATTGATCCAAAGTCAAAATTTGTCATGAACATTTCTC
TGACAATGAGAAACCATGTATTCCTTAGAGAAGACGCGACNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTATCGATTTTCGGCTAAATAGCCTATATAAAATAGTCTAAATAGCC
TATGATAGGCTAATCAGCCTATGATAGGCTAATTTGAAGGTGTCCTTGAC
TGTCTGAAAGATATTAGTTCTATTTATATATAAATGGCTGGACGGACTTT
AGGTGTCGAACCGGGTTCTGGGCCTACTTTCTGAAAATTTGTGTTTTTTG
ATACTTGTATTTTGTCGTTTGTCTTGCTTGTTCTTGTTTCTTTGTATTTG
TGTGGGAGTTTTTGTTTATTTTTCTATGTTTGTTAGTTTGTTTGGACTGC
GGGTCGGTTTAGGGTTATGGAATCTGGGGGAGGCTGAGTGTTTAAAGCAG
CTGCGCCTGTCGCAAGTCAGGGACTCCAGATTGCATTGGTTGGGTTTTTG
AGTGGTTTTCGGTGTTTGTGTTTTTCTGCTTGGCTTTTTAAAATTATGTC
TATTGGTTTGTTGGTTCTTTTTCGCATAAAATTCTCATTTCTTGACAATA
TGTTTGATTGGTTTGATTTATATATTTAGAAAAATTAAAAAAATTGAAAA
AACGTATAGTTATAAAAATATTAGTGCCTTTTTATGTTTCATCTTTATTT
TATTTAGTATTTTCAACACTTTCTCTCCTTGAGGTCAGATCTCTGATCTT
CACCATATATATATCTGATCAACATTGCTAGGCCTACCTACATTACCCTG
TTTATATCATTTGGGAGGATATTTTCGAAATTGGCCGAAATCCTATGTAG
GTTGAAAACTGAAGAACAGAGTTTGTGTTTTCTTTGAATATATTTAATTG
ATTCATATTGAGTTACTTGTATTTGTGTTTATTTTTACTTATTCTCACAT
TGAGTTGCTTCTTTCCTTTTGGTCGACTTAGATCACGATGTGCATTTTTG
CTTTTGAGATACTTCCGAAGAATACACCATTGTCCCATTTCTGTTTTTCT
GTTCCATCAGAATTATGTACAAATAGTTTAGATCTTTGTCATCATTTGAT
ATCACATACCTGGTTTCCATTTTATGAATATTCATCCTGAGCATGAATTG
TTGTGTCTCTTTTTGTTTATTACATTTCTTGAATAGTTGAAGCTTCAATA
CTTCTTTGACTATATGTATTCATTTTCATCTACTTATCCTTTCTATTTCA
TCTATTCAGATTCCTATCATAGTAAATCTTCAAATCAGAAGAGTCAACAA
CTTGAAATGGTATTTTTATTTTAATAAATTATAGCATCGTGGAAAAGTTA
AACGGATGCTTGAATAATCAATTTCTTCAAAAAGTGTGATACTTTGATGT
CTCAGATTTTGCTGAAATCTTGACAGGATGATCCTTTCAGTAAGATGAGA
CAACGCTGAAAATTACAGCTACATATTTCAGGCGGTTCTAGGGATATAGC
AGATTGAACCTCGAATTCCTTAAATAGCTCTCCCTAAAGAAATAGCTAGA
ATTTCTGCAGGGAAGAAACTTTGAATGTGAATAAAGACCTATTCTTTCTA
ATTTATTAGAACTTTTGGCTTGGATTCAGAAAAACACAAAGTTGGTTGTC
AAAGAAATCCCAAATAATTTTCCGGACTCCCTAAACTGGTTCTATGTCCG
AGTGAAAACCTTATTCCTTTTCTTTCTCTGAAATAGCAGATTTGAATCAA
AAAGTTTAAGTAAAAAAAATATTTAGTTGAATTGAATTTTTGATTAATCA
ATCAATTAAATAAACGTCGTTGCATTTCATTTAGAATGCCGAGCTGGATC
ATTTCGAAACCTTGATGCACAGCATAGATGACAAATCATTACTGCAACAT
GCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00073396TCONS_00073396Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00073396-proteinTCONS_00073396-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:141471..150673 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (3.94 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.22	0.22	0.25	0.17	0.3	0.4	1.06	0.99	0.06	0.31	0	0.25	0.4	0.52	0.13	0.14	0.06	0.06	0.24	0.25	0.07	0.11	0	0.47	3.7	3.94	0.51	0.22	0	0