TCONS_00016172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016172
Unique NameTCONS_00016172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016172 ID=TCONS_00016172|Name=TCONS_00016172|organism=Clytia hemisphaerica|type=transcript|length=798bp
ggatcatgacataccaaacgaaagatctttttacgcccttttcgggcgtc
taaatcaataccgcctttttttcgcgggatttcctaatatgacgtaatca
aagatggtaaccaaagaagtgaaatttttaaaaacatacaaattttGGAG
GCTGTCAGCCAGTCAGCAGTGTTTTTGACTATGAAAACTGCTTTAAtttg
gaaatgttggattgaCTAATGACATTTTAGCTCTTTAATGTCATTCTTCT
CAACTAAGAAAGCTTGAGCTAGGTGAAACCAAAGACTTGATTCTGAAACT
CAACGTTTTCGATATGAACTTTGTTTGACGACACCGTAAAACTTACTGAA
GGACGAAGACCAAAGGcatattcaatgatgtatctatttaaagATCCAAG
TTTTAAAGGAATTGAAAGCCTGGAGGCTGGTTTAACAATTGTGTGTGATG
AATTATTGAAGGTCTGGGGCGCTCCCTCCGCCCTCTGGCTGGATTATTTA
TACATTCACGAAGAAATCGTGCACGGCTAGCTAGATGTCCAAGTGGATTC
TTGTATCACAACAGATCAACTTTAGATTAACTTATAACTGACAGAATCAG
TGAGGAAAATATACTAGGATGATCTATTACATTGAAAATATAGTTTTTGT
TGTGAAAACACATTTAAATTGACTTACATCAATGTTGACGTGGAGTTTgg
cgcaaaattttaaggattggcgcacatcacgtgaaagtgataatttggaa
tttctggactattttgatatttcaaagccTTTTCCAAAGTATATAAAG
Run BLAST on NCBI

transcript from alignment at sc0000226:140004..140801

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016172 ID=TCONS_00016172|Name=TCONS_00016172|organism=Clytia hemisphaerica|type=transcript|length=798bp|location=Sequence derived from alignment at sc0000226:140004..140801 (Clytia hemisphaerica)
CTTTATATACTTTGGAAAAggctttgaaatatcaaaatagtccagaaatt
ccaaattatcactttcacgtgatgtgcgccaatccttaaaattttgcgcc
AAACTCCACGTCAACATTGATGTAAGTCAATTTAAATGTGTTTTCACAAC
AAAAACTATATTTTCAATGTAATAGATCATCCTAGTATATTTTCCTCACT
GATTCTGTCAGTTATAAGTTAATCTAAAGTTGATCTGTTGTGATACAAGA
ATCCACTTGGACATCTAGCTAGCCGTGCACGATTTCTTCGTGAATGTATA
AATAATCCAGCCAGAGGGCGGAGGGAGCGCCCCAGACCTTCAATAATTCA
TCACACACAATTGTTAAACCAGCCTCCAGGCTTTCAATTCCTTTAAAACT
TGGATctttaaatagatacatcattgaatatgCCTTTGGTCTTCGTCCTT
CAGTAAGTTTTACGGTGTCGTCAAACAAAGTTCATATCGAAAACGTTGAG
TTTCAGAATCAAGTCTTTGGTTTCACCTAGCTCAAGCTTTCTTAGTTGAG
AAGAATGACATTAAAGAGCTAAAATGTCATTAGtcaatccaacatttcca
aaTTAAAGCAGTTTTCATAGTCAAAAACACTGCTGACTGGCTGACAGCCT
CCaaaatttgtatgtttttaaaaatttcacttctttggttaccatctttg
attacgtcatattaggaaatcccgcgaaaaaaaggcggtattgatttaga
cgcccgaaaagggcgtaaaaagatctttcgtttggtatgtcatgatcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009032XLOC_009032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016172-exon-sc0000226-1491911889:140004..140801TCONS_00016172-exon-sc0000226-1491911889:140004..140801Clytia hemisphaericaexon
TCONS_00016172-exon-sc0000226-1510915933:140004..140801TCONS_00016172-exon-sc0000226-1510915933:140004..140801Clytia hemisphaericaexon
TCONS_00016172-exon-sc0000226-1575043694:140004..140801TCONS_00016172-exon-sc0000226-1575043694:140004..140801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:140004..140801 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58356	1.01362	2.07022	0.89044	2.38784	2.45554	2.34323	2.80097	2.12744	3.25655	4.5615	3.25658	2.16059	2.2498	2.17838	2.52738	1.34808	1.21586	4.01067	5.139	2.72968	2.59732	2.00707	2.66932	1.39134	1.76023	9.45689	7.88675	8.12755	6.52487
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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