TCONS_00016171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016171
Unique NameTCONS_00016171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016171 ID=TCONS_00016171|Name=TCONS_00016171|organism=Clytia hemisphaerica|type=transcript|length=415bp
NTTCTCGATAAAAGCACTGTATCATGAGATTTTGcacaaaccaaataaaa
tgaagtgaaaagtaaCTCTACGATGAACGAAAAACTCTGGTTAGTTCTGA
GCATCATATTGTATagtgatttggaattttatgaaataatgttgaggaag
tagcagtggacacattgatttgattaaatttaaaatcctgtgactatcat
tgaaaattaagatcaaaCCATCAATCAAAAGACTTTGTCTTCTTGTGCTT
CTGGCATGGTTCGACTCTGAAGCTACATATCTCTGCACCCTTTTTGAAAG
TCCTCGTACATGCTATGATTTGGGAACagttgaacatatttttcatgtac
caGTTTGTTTGGTGATGGAtggggccccccagcggtttgcgtgaatgcgt
gaatgggcttttttg
Run BLAST on NCBI

transcript from alignment at sc0000226:114412..114826

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016171 ID=TCONS_00016171|Name=TCONS_00016171|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at sc0000226:114412..114826 (Clytia hemisphaerica)
caaaaaagcccattcacgcattcacgcaaaccgctggggggccccaTCCA
TCACCAAACAAACtggtacatgaaaaatatgttcaactGTTCCCAAATCA
TAGCATGTACGAGGACTTTCAAAAAGGGTGCAGAGATATGTAGCTTCAGA
GTCGAACCATGCCAGAAGCACAAGAAGACAAAGTCTTTTGATTGATGGtt
tgatcttaattttcaatgatagtcacaggattttaaatttaatcaaatca
atgtgtccactgctacttcctcaacattatttcataaaattccaaatcac
tATACAATATGATGCTCAGAACTAACCAGAGTTTTTCGTTCATCGTAGAG
ttacttttcacttcattttatttggtttgtgCAAAATCTCATGATACAGT
GCTTTTATCGAGAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009031XLOC_009031Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016171-exon-sc0000226-1491911889:114412..114826TCONS_00016171-exon-sc0000226-1491911889:114412..114826Clytia hemisphaericaexon
TCONS_00016171-exon-sc0000226-1510915933:114412..114826TCONS_00016171-exon-sc0000226-1510915933:114412..114826Clytia hemisphaericaexon
TCONS_00016171-exon-sc0000226-1575043694:114412..114826TCONS_00016171-exon-sc0000226-1575043694:114412..114826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:114412..114826 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.00782	7.0358	5.10297	6.77129	41.2285	29.8363	28.7586	25.0082	7.9539	12.7507	15.8113	12.2731	14.0882	14.6372	11.3822	12.4614	9.26289	12.8854	8.0441	16.2443	17.8166	19.8752	13.4778	16.678	16.7706	21.8463	34.2113	27.4898	23.4345	25.2034
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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