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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001397 ID=TCONS_00001397|Name=TCONS_00001397|organism=Clytia hemisphaerica|type=transcript|length=1076bp
TGAAGCAAATAACGATGAAGGATTTCGTTGGTATACTTTTCTTCTTGAGT
TTTACTACAGGAATCAATTCACAGGCTGTACCATGTTCAGCAAATTTGGC
CGCTTTTGTTGCAGATCAAGAGATACGAGATGAAGATCATTTCTGCGTAC
AAAATCTGTCCGGTACATTCATACTTTACGTCATCACAGAGGGCCCGACA
GTCCATGACGCTTTCCAGAAATGCAGGCAAAATAGTGGGATGTTGACTTA
TAAGACTTTACCTGATGAGGAAAGAACACTATACGCTGGTTTAATGCAAA
AcAATGGATTGTCTCAAGCTGTTGGTTTCAGCGCAAACAAAATATGCTAC
ATTTACAAAATTGGTCAAGAGGGTTATACAATGGAGAGATGCTCAGAAGA
AATTTCCAAGCATTATCTATGTAGATACTTTTTTACAATACCACCCGTCC
CTGCttcatccttattttttggTCCCAATAACGAATACGAGCAAATAACT
CAACAAAGTGATGGGGGAGTGTACCCTGATACATTTCTATCCGCAAAGAA
ATCTTGTGAAGCGAAAGGCAAAGAAGTTTTATCGATTGAAAATCTGGCAA
AGTTCGAAAGTTTCTTCGATCTTTTTGCTGAAGCAGGCGCattCCTTCCT
ACTTTGTGGTTAGGAATGACATACGATCCATTTGACAAGAAGTTTCGATA
CTGTAACAAAGAAATCCAATCAACTTTTCGACCATGGTGTTCCAacacaa
atgattttgatgacgaAGGAAGACTATGTGTAGTTCTTGACTTCATAAGC
GGTTGCTTTCGACAAGTTTATTGTGGCTTGAGCACACCCAGTATTATTTG
TCAGCATCAATTTTCGCCTTTATCAACTTATGTTCGAGTTGCACAGAATT
TGATCAATGAAATTAAGAGCGATTGTAAATCATgcaagaaaaattgatga
aattgaCCCTGGTTATTCTTATAAGtgctatgcttataaatatcgtttaa
aaaagtgctataaGTATTTCTCCGTAATGGCTGGTCTctactttcgcgcg
aaatgagcgacagtttttttcttaac Run BLAST on NCBI transcript from alignment at sc0000010:1036085..1040591+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001397 ID=TCONS_00001397|Name=TCONS_00001397|organism=Clytia hemisphaerica|type=transcript|length=4507bp|location=Sequence derived from alignment at sc0000010:1036085..1040591+ (Clytia hemisphaerica)
TGAAGCAAATAACGATGAAGGATTTCGTTGGTATACTTTTCTTCTTGAGT
TTTACTACAGGAATCAATTCACAGGCTGTACCATGTTCAGCAAATTTGGC
CGCTTTTGTTGCAGATCAAGAGATACGAGATGAAGATCATTTCTGCGTAC
AAAATCTGTGTAGGCTTCAAATTCAACCTAAATTTAACATGTCGTAAAAA
ctgctctcatccataaattttgcagggtatctcgctacgcctttGCATGT
GATGCATAATGAAGCATAAAAtagtatttttgtgaaagttttgagCCTTT
CCCATGGGATAAATTATAATCAACggttaaaaatgctctaaaaactACAT
TTTTGGGTTCTAATGCCGATTCCATGCAGGTGATATTTTTAGCAAATTTA
ATcatagatattcttataaagtatattcttataaaaaaccgtgtaGAAAT
GAATTGCCAAGTATCCTTACATCTATTCAAATTCGACATATGGgaagtat
tttattttctctttcaGCCGGTACATTCATACTTTACGTCATCACAGAGG
GCCCGACAGTCCATGACGCTTTCCAGAAATGCAGGCAAAATAGTGGGATG
TTGACTTATAAGACTTTACCTGATGAGGAAAGAACACTATACGCTGGTTT
AATGCAAAAGTAAGGAAACTTCTTATCTGTTATTTTGATGGCAGAtaggc
ggccgcccacgctaaagctatAAAGatgccaatttcccatcggagaggaa
tgataggcggcctttgatgtgccgcatccccagtcgggttcaactaccct
tgcacgtaaacctaaaaaatatttcggttgaaCCCGCCAATCcacgaaaa
cgagggctgggttaccagacctcccgctgcaataTCTTTGACGTGGTCTT
GCAAatttccgtaatctaaaccttccagatgttgaaagttttcCCGACTT
TCCGAGCTTTAGCTTGTCGGatgccccggggggggggggtacttaggcaa
atggagggtaagggtaccttttttggacttccaaagtcccgctaagggtt
ggaaaaatcagaaaatcaaatttcagcccactaagggtcggaaaaatagg
attatttcaactttttaccccctgaaagatcgaaatttggtcaaaattgg
tcaaaattgtcCCGCTAACGctcgagtgacttagggcaagtctcaaaaac
ctaacagtttaccctaagttttcgctaccaatagcagccagattcagaga
gccacttagggctctaaagtacctctataccttaaggtttcaggacccgg
tgttacgtaattaaatattaacccaaaaattaattattaaagaaattgta
atggtgacgtcataatttgatcgaatttggtgacgtcatgaatcgtataa
ttgctataatattaaaaatatatgtccaatctttcccaaattttaaccaa
agatgtatctaactgaaatgtaattttttgaaaaaaaaattttggaaaaa
tttgatgatgtcagcaaaaaattgcgtttttcgattttttgcattttttg
ctgacgtcatcaaaatcttttgaaaatttttcattgaaaagtttgGCACC
Attaagatgcatctttggtccaaatttgacaacgatttgacatgtactta
tatagttagagctaatttacgatttatgacgtcataatttgatgacgtca
taattcacaatttctttaataattaatttttaggttaatatttaattacg
taacaaacGGTTCATGGCACCTTAAggtataggtcatctaaaaatcTATA
AGTGAATAcctgagaatgggtgctattggtcgcggattcggGATTTGTGA
TATTTAAAAATCTAGACATACCCTAACTCACCCGAGCGGTCGTAAAactc
ccaaaattttcctttgcagATAAGGAAAGTTCTCTCCAATAAACGAGTAA
TGTTTTGTCTTGTGTTGGTCCATTTCGTGAGGCATTAAGTCCCTTTTTGG
GCGTCTTTGATATGATTCGGCTGAGGATCGAATCTACAatcttgcgcacc
gtagctggatgctctaccgtTATAGTATAGCCGCTTGAACGGTATTAGGC
TATTAAATTTATAATTGTCAtcataaaagaaatattttttcttttttttc
cagcAATGGATTGTCTCAAGCTGTTGGTTTCAGCGCAAACAAAATATGCT
ACATTTACAAAATTGGTCAAGAGGGTTATACAATGGAGAGATGCTCAGAA
GAAATTTCCAAGCATTATCTATGTAGATACTTTTTTACAATACCACCCGT
CCCTGCttcatccttattttttggTCCCAATAACGAATACGAGCAAATAA
CTCAACAAAGTGATGGGGGAGTGTACCCTGATACATTTCTATCCGCAAAG
AAATCTTGTGAAGCGAAAGGCAAAGAAGTTTTATCGATTGAAAATCTGGC
AAAGTTCGAAAGTTTCTTCGATCTTTTTGCTGAAGCAGGCGCattgtaag
acattttttatttagattttgtTATGGTATCACTATCGATAGTACCTCTC
AATACAAtattatgtcaaaaatatttgTATCATCGCCTTATCATTACCTA
GCCTTTTAGCCTTAAATATTATTCTAAAATGGCCAATTCCTTCACCAGTT
AATAAAATCAACCACCTTACTGGAAGTTATTTCTCACCTCTCGAATATTG
TTAGAATTTTGAGGTATAAGGAGGCACTTCGTAGAAAAAGTTTTAGTAGA
AGCTGAGCGCTTTTTGATGTCTGCATTATAGTACCAGGATTTCTCCCAAT
TCACCGTGTCTGACCGCagtcagtagacaagaattcacttGCAGCTCTAC
CCAGTCGCAATTGAGTCATCGGGTTCcacatggacccgtagctcaatggt
agagcaaatgccTACGATTGACATGGTTGCGAGTTCGAGTCTCGCTGGAT
CTGTtagttttccaacggttctggtggctggtcagaaaacaatatgagag
cgactgtattcacttcattgtatTACAGTACCAGCAATTCTTGACCTTTC
TTTGTTTAGCCTTCCTACTTTGTGGCTAGGAATGACATACGATCCATTTG
ACAAGAAGTTTCGATACTGTAACAAAGAAATCCAATCAACTTTTCGACCA
TGGTGTTCCAacacaaatgattttgatgacgaAGGAAGACTATGTGTAGT
TCTTGACTTCATAAGCGGTTGCTTTCGACAAGTTTATTGTGGCTTGAGCA
CACCCAGCATTATTTGTCAGCATCAATTTTCGCCTTTATCAACTTATGTT
CGAATTGCACAGAATTTAATCAATGAAATTAAGAGCGATTGTAAATCATg
caagaaaaattgatgaaattgaCCCTGGTTATTCTTATAAGtgctatgct
tataaatatcgTTTAAAAAAAGTGCTATAAGTATTTCTCCGTAATGGCCG
GTCTctactttcgcgcgaaatgagcgacagtttttttcttaacctttttt
gcccgaagaaaagattacgtcataaaaaagNTTTTGTTATGGTATCACTA
TCGATAGTATCTCTCAATACAAtattatgtcaaaaatatttgTATCATCG
CCTTATCATTACCTAGCCTTTTAGCCTTAAATATTATTCTAAAATGGCCA
ATTCCTTCACCAGTTAATAAAATCAACCACCTTACTGGAAGTTATTTCTC
ACCTCTCGAATATTGTTAGAATTTTGAGGTATAAGGAGGCACTTCGTAGA
AAAAGTTTTAGTAGAAGCCGAGCGCTTTTTGATGTCTGCATTACAGTACC
AGGATTTCTCCCAATTCACCGTGTCTGACCGCagtcagtagacaagaatt
cacttGCAGCTCTACTCAGTGGCAATTGAGTCATCGGGTTCcacatggac
ccgtagctcaatggtagagcaaatgcccgcGATTGACATGGTTGCGAGTT
CGAGTCTCGCTGGATctgttggttttccaacggttctggtggctggtcag
aaaacaatatgagagcgactgtattcacttcattgtatTACAGTACCAGC
AATTCTTGACCTTTCTTTGTTTAGCCTTCCTACTTTGTGGTTAGGAATGA
CATACGATCCATTTGACAAGAAGTTTCGATACTGTAACAAAGAAATCCAA
TCAACTTTTCGACCATGGTGTTCCAacacaaatgattttgatgacgaAGG
AAGACTATGTGTAGTTCTTGACTTCATAAGCGGTTGCTTTCGACAAGTTT
ATTGTGGCTTGAGCACACCCAGTATTATTTGTCAGCATCAATTTTCGCCT
TTATCAACTTATGTTCGAGTTGCACAGAATTTGATCAATGAAATTAAGAG
CGATTGTAAATCATgcaagaaaaattgatgaaattgaCCCTGGTTATTCT
TATAAGtgctatgcttataaatatcgtttaaaaaagtgctataaGTATTT
CTCCGTAATGGCTGGTCTctactttcgcgcgaaatgagcgacagtttttt
tcttaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001397-exon-sc0000010-1491911889:1036085..1036243 | TCONS_00001397-exon-sc0000010-1491911889:1036085..1036243 | Clytia hemisphaerica | exon |
| TCONS_00001397-exon-sc0000010-1510915933:1036085..1036243 | TCONS_00001397-exon-sc0000010-1510915933:1036085..1036243 | Clytia hemisphaerica | exon |
| TCONS_00001397-exon-sc0000010-1575043694:1036085..1036243 | TCONS_00001397-exon-sc0000010-1575043694:1036085..1036243 | Clytia hemisphaerica | exon |
| TCONS_00001397-exon-sc0000010-1491911889:1036602..1036743 | TCONS_00001397-exon-sc0000010-1491911889:1036602..1036743 | Clytia hemisphaerica | exon |
| TCONS_00001397-exon-sc0000010-1510915933:1036602..1036743 | TCONS_00001397-exon-sc0000010-1510915933:1036602..1036743 | Clytia hemisphaerica | exon |
| TCONS_00001397-exon-sc0000010-1575043694:1036602..1036743 | TCONS_00001397-exon-sc0000010-1575043694:1036602..1036743 | Clytia hemisphaerica | exon |
| TCONS_00001397-exon-sc0000010-1491911889:1038238..1038579 | TCONS_00001397-exon-sc0000010-1491911889:1038238..1038579 | Clytia hemisphaerica | exon |
| TCONS_00001397-exon-sc0000010-1510915933:1038238..1038579 | TCONS_00001397-exon-sc0000010-1510915933:1038238..1038579 | Clytia hemisphaerica | exon |
| TCONS_00001397-exon-sc0000010-1575043694:1038238..1038579 | TCONS_00001397-exon-sc0000010-1575043694:1038238..1038579 | Clytia hemisphaerica | exon |
| TCONS_00001397-exon-sc0000010-1491911889:1040159..1040591 | TCONS_00001397-exon-sc0000010-1491911889:1040159..1040591 | Clytia hemisphaerica | exon |
| TCONS_00001397-exon-sc0000010-1510915933:1040159..1040591 | TCONS_00001397-exon-sc0000010-1510915933:1040159..1040591 | Clytia hemisphaerica | exon |
| TCONS_00001397-exon-sc0000010-1575043694:1040159..1040591 | TCONS_00001397-exon-sc0000010-1575043694:1040159..1040591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:1036085..1040591 + |
Blast
The following BLAST results are available for this feature:
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